RESULT

Search Results

Back New Search

COCA 3370 /5 [CHA] Group Name Theobroma cacao

Chalmers, W.S. (1973)
Report on a visit to Ecuador, Peru, and Brasil, March 1st-April 15th 1973. Unpublished Report. Cocoa Research Unit, University of the West Indies, Trinidad. pp. 31.

Derivation: COCA river.
Collected by Chalmers (INIAP/UWI).
Location: R. Coca, Oriente, Ecuador.

Notes: Chalmers, 1973a [CHA73A] Chalmers marked these trees and made the initial collections in 1968. Further collections of both budwood and seed were made on later expeditions in 1969 and 1970.

Show Hide Reset

Show Hide Reset

POPULATION

Guiltinan, Mark, 2019: 'Iquitos' Population; Reference

Reference

Guiltinan, Mark 2019
Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI
Notes

A project to establish a new scientific approach for use with perennial crop plants to identify candidate loci for disease resistance using Theobroma cacao. Leaf samples were collected from the La Montaña field site at the CATIE field station in Turrialba, Costa Rica. The study focused on four genetic groups (Guiana, Iquitos, Marañon, and Nanay) and variation in resistance to Phytophthora.
Last updated: November, 2022

plantscience.psu.edu/…

Disease Population Accession Data Project Data

GENOME/TRANSCRIPTOME DATA LINKS

Show Details Hide Details

Guiltinan, Mark, 2019

BioProject: PRJNA558793 NCBI ENA FASTQ

Library Source: Genomic & Transcriptomic

Run: SRR14022550 NCBI ENA FASTQ

Library Source: Genomic

Experiment: SRX10399125

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

Run: SRR14022551 NCBI ENA FASTQ

Library Source: Genomic

Experiment: SRX10399124

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

Run: SRR9938281 NCBI ENA FASTQ

Library Source: Genomic

Experiment: SRX6686842

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

Run: SRR9938282 NCBI ENA FASTQ

Library Source: Genomic

Experiment: SRX6686841

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

Run: SRR9938283 NCBI ENA FASTQ

Library Source: Genomic

Experiment: SRX6686840

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

Run: SRR9938228 NCBI ENA FASTQ

Library Source: Transcriptomic

Experiment: SRX6686895

BioSample: SAMN12500389

SampleName: COCA-3370-5

SampleSource: Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica, Tree_ID: P000007

DISEASE

Phytophthora: Resistant; Guiltinan, Mark, 2019

Reference

Guiltinan, Mark 2019
Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI
Notes

A project to establish a new scientific approach for use with perennial crop plants to identify candidate loci for disease resistance using Theobroma cacao. Leaf samples were collected from the La Montaña field site at the CATIE field station in Turrialba, Costa Rica. The study focused on four genetic groups (Guiana, Iquitos, Marañon, and Nanay) and variation in resistance to Phytophthora.
Last updated: November, 2022

plantscience.psu.edu/…

Disease Population Accession Data Project Data

REFERENCES

Chalmers, W.S. (1973) Report on a visit to Ecuador, Peru, and Brasil, March 1st-April 15th 1973. Unpublished Report. Cocoa Research Unit, University of the West Indies, Trinidad. pp. 31.

Guiltinan, Mark (2019) Theobroma cacao Disease Resistance: Discovery and Functional Characterization of Genes Regulating Plant Immunity in Perennial Crops. NCBI