SNP Profiles of CC 38   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._CC 38___
CGGGATGGCCTTCCTTCCTTCTAAGGAC
2._CC 38___
CGGGATGGCCTTCCTTCCTTCTAAGGAC
3._CC 38___
CGGGATGGCCTTCCTTCCTTCTAAGGAC
4._CC 38___
CG___AT_______________CCTTCT______AC
5._CC 38___
CG___AT_______________CCTTCT______AC
6._CC 38___
CG___AT_______________CCTTCT______AC
7._CC 38___
CG___AT_______________CCTTCT______AC
8._CC 38___
CG___AT_______________CCTTCT______AC
9._CC 38___
CG___ATGGGGAACCAACCAAAGTTGGAC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._CC 38___
CCAAGGCCATAGGGAATTGGAGTTCCAG
2._CC 38___
CCAAGGCCATAGGGAATTGGAGTTCCAG
3._CC 38___
CCAAGGCCATAGGGAATTGGAGTTCCAG
4._CC 38___
CCAA___CC_________AA______AG______AG
5._CC 38___
CCAA___CC_________AA______AG______AG
6._CC 38___
CCAA___CC_________AA______AG______AG
7._CC 38___
CCAA___CC_________AA______AG______AG
8._CC 38___
CCAA___CC_________AA______AG______AG
9._CC 38___
GGAAGGGGATAGGGAAAAGGAGTTGG___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._CC 38___
___ACCCTTAGGTAGCGACCCAGTTGGAA
2._CC 38___
___ACCCTTAGGTAGCGACCCAGTTGGAA
3._CC 38___
___ACCCTTAGGTAGCGACCCAGTTGGAA
4._CC 38___
______CCTT___GT___CGAC______TTGG___
5._CC 38___
______CCTT___GT___CGAC______TTGG___
6._CC 38___
______CCTT___GT___CGAC______TTGG___
7._CC 38___
______CCTT___GT___CGAC______TTAA___
8._CC 38___
______CCTT___GT___CGAC______TTAA___
9._CC 38___
AGACCC___AGACAGCGACGG___AA___GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._CC 38___
AATTCCGGAGTTTTTTACGG___GGCCCT
2._CC 38___
AATTCCGGAGTTTTTTACGG___GGCCCT
3._CC 38___
AATTCCGGAGTTTTTTACGG___GGCCCT
4._CC 38___
_________GG_____________________GG___CT
5._CC 38___
_________GG_____________________GG___CT
6._CC 38___
_________GG_____________________GG___CT
7._CC 38___
_________GG_____________________GG___CT
8._CC 38___
_________GG_____________________GG___CT
9._CC 38___
AA______CCAGAAAAAAACCCGGCC___AG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._CC 38___
CGAGCTGGCCATTTAGCTTTCCCCAAGG
2._CC 38___
CGAGCTGGCCATTTAGCTTTCCCCAAGG
3._CC 38___
CGAGCTGGCCATTTAGCTTTCCCCAAGG
4._CC 38___
______CTGG___ATTTAG_________CCAA___
5._CC 38___
______CTGG___ATTTAG_________CCAA___
6._CC 38___
______CTGG___ATTTAG_________CCAA___
7._CC 38___
______CTGG___ATTTAG_________CCAA___
8._CC 38___
______CTGG___ATTTAG_________CCAA___
9._CC 38___
CGAGAGGGGGATAAAG___AA___GGAACC
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._CC 38___
AACCAATTCTTTCTCCGTACGTCTTTAA
2._CC 38___
AACCAATTCTTTCTCCGTACGTCTTTAA
3._CC 38___
AACCAATTCTTTCTCCGTACGTCTTTAA
4._CC 38___
AA_________CT______CC______GTCT___AA
5._CC 38___
AA_________CT______CC______GTCT___AA
6._CC 38___
AA_________CT______CC______GTCT___AA
7._CC 38___
AA_________CT______CC______GTCT___AA
8._CC 38___
AA_________CC______CC______GTCT___AA
9._CC 38___
AAGGAA______AAAG___AC___ACAGAAAA
 85 86 87 88 89 90 91 92 93 94 95 96   
1._CC 38___
GGCTCTCTGGAGCTACAAAAAAACX_XX_X
2._CC 38___
GGCTCTCTGGAGCTACAAAAAAACX_XX_X
3._CC 38___
GGCTCTCTGGAGCTACAAAAAAACX_XX_X
4._CC 38___
___CT___CTGGAGCT_______________X_XX_X
5._CC 38___
___CT___CTGGAGCT_______________X_XX_X
6._CC 38___
___CT___CTGGAGCT_______________X_XX_X
7._CC 38___
___CT___CTGGAGCT_______________X_XX_X
8._CC 38___
___CT___CTGGAGCT_______________X_XX_X
9._CC 38___
GGAGAGAGCCAGAGAC___AAAAACX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CC_38 NA

Location: Tree: 3
Notes: 3
 Mars, 2018

2._CC_38 NA

Location: Tree: 6
Notes: 6
 Mars, 2018

3._CC_38 NA

Location: Tree: 7
Notes: 7
 Mars, 2018

4._CC_38

Location: 8128 3
 Dapeng Zhang, 2016

5._CC_38

Location: 8128 6
 Dapeng Zhang, 2016

6._CC_38

Location: 8128 7
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

7._CC_38

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

8._CC_38

Location: 4A B270 T1
 Dapeng Zhang, 2016

USDA-TARS United States of America

9._CC_38 CC 38_Fld#_45_Plt#_1

Location: Field: 45, Tree: 1
Notes: TARS_Cacao_collection
 Mars, 2018

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP497 30TcSNP521
31TcSNP529 32TcSNP534 33TcSNP547 34TcSNP560 35TcSNP561
36TcSNP577 37TcSNP591 38TcSNP602 39TcSNP606 40TcSNP619
41TcSNP645 42TcSNP653 43TcSNP689 44TcSNP701 45TcSNP702
46TcSNP723 47TcSNP731 48TcSNP751 49TcSNP776 50TcSNP799
51TcSNP823 52TcSNP836 53TcSNP860 54TcSNP872 55TcSNP878
56TcSNP891 57TcSNP894 58TcSNP899 59TcSNP917 60TcSNP929
61TcSNP944 62TcSNP953 63TcSNP994 64TcSNP998 65TcSNP999
66TcSNP1034 67TcSNP1041 68TcSNP1060 69TcSNP1062 70TcSNP1063
71TcSNP1075 72TcSNP1096 73TcSNP1111 74TcSNP1126 75TcSNP1144
76TcSNP1149 77TcSNP1156 78TcSNP1165 79TcSNP1175 80TcSNP1242
81TcSNP1253 82TcSNP1270 83TcSNP1309 84TcSNP1350 85TcSNP1383
86TcSNP1414 87TcSNP1439 88TcSNP1442 89TcSNP1458 90TcSNP1484
91TcSNP1520 92Tcm001s00947643 93Tcm002s20575712 94Tcm003s01336581 95Tcm003s07402719
96Tcm006s26664133