SNP Profiles of "CC 137"   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1. _GC-01-134-7-11
______GGGG______AG______CCCTACCT___
2. _GC-01-134-7-11
______GGGGTT___AG______CCCTACCT___
3. _GC-01-134-7-11
______GGGGAT___GG______TTCCCCCT___
4. _GC-01-134-7-11
______GGGGTT___AG______CCCTACCT___
5. _GC-01-134-7-11
______GGGGTT___AG______CCCTACCT___
6. _1711_1
______GG_________________________________
7. _1711_2
______GG___TT___________________________
8. _1711_5
______GG___TT___________________________
9. _1711_6
______GG___TT___________________________
10. _1711_4
______GG___AT___________________________
11. _Cabiria
______GG___TT___________________________
12. _RUQ_1637
TTCC_________CT___CCTT____________GT
13. _RUQ_1637
______GGCCTT___AG______GGAGACAG___
14. _RUQ_1637
______________________________CTAC______
15. _RUQ_1637
______GG___TT___________________________
16. _MITC-000809
______GGCCTT___AG______GGAGACAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1. _GC-01-134-7-11
___CCGTCTATGG______AC___CCAAGGCT
2. _GC-01-134-7-11
___CCGTCTATGG______AC___CCAAGGCT
3. _GC-01-134-7-11
___ACGGCTATGG______AA___GGAGGGCC
4. _GC-01-134-7-11
___CCGTCTATGG______AC___CCAAGGCT
5. _GC-01-134-7-11
___CCGTCTATGG______AC___CCAAGGCT
6. _1711_1
___CCGTCT____________AC___CCAA___CT
7. _1711_2
___CCGTCT____________AC___CCAA___CT
8. _1711_5
___CCGTCT____________AC___CCAA___CT
9. _1711_6
___CCGTCT____________AC___CCAA___CT
10. _1711_4
___ACGGCT____________AA___GGAG___CC
11. _Cabiria
___CCGT_______________AC______AA___CT
12. _RUQ_1637
ATCC____________CTGG___GG___AA______
13. _RUQ_1637
___CCACAGATGG______AC___GGAAGGAG
14. _RUQ_1637
___CCGTCT___GG______AC___CCAA___CT
15. _RUQ_1637
___CCGTCT____________AC___CCAA___CT
16. _MITC-000809
___CCACAGATGG______AC___GGAAGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1. _GC-01-134-7-11
______ATAG___AGAACTAG___GGATCCAG
2. _GC-01-134-7-11
______ATAG___AGAACTAG___GGATCCAG
3. _GC-01-134-7-11
______AAAG___AGATCCAG___GGAACGAA
4. _GC-01-134-7-11
______ATAG___AGAACTAG___GGATCCAG
5. _GC-01-134-7-11
______ATAG___AGAACTAG___GGATCCAG
6. _1711_1
__________________AA_________GG______AG
7. _1711_2
__________________AA_________GG______AG
8. _1711_5
__________________AA_________GG______AG
9. _1711_6
__________________AA_________GG______AG
10. _1711_4
__________________AT_________GG______AA
11. _Cabiria
______________________________GG______AG
12. _RUQ_1637
TTAC___AGAA____________CC____________
13. _RUQ_1637
______ATAG___AGAAAGAG___GGATGG___
14. _RUQ_1637
_________AG___AGAA_______________CCAG
15. _RUQ_1637
__________________AA_________GG______AG
16. _MITC-000809
______ATAG___AGAAAGAG___GGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1. _GC-01-134-7-11
______CC___CCCT___GGTTAACC___CCCC
2. _GC-01-134-7-11
______CC___CCCT___GGTTAACC___CCCC
3. _GC-01-134-7-11
______AC___CCCT___GGGTAACC___CCCT
4. _GC-01-134-7-11
______CC___CCCT___GGTTAACC___CCCC
5. _GC-01-134-7-11
______CC___CCCT___GGTTAACC___CCCC
6. _1711_1
____________CCCT______TT___CC___CC___
7. _1711_2
____________CCCT______TT___CC___CC___
8. _1711_5
____________CCCT______TT___CC___CC___
9. _1711_6
____________CCCT______TT___CC___CC___
10. _1711_4
____________CCCT______GT___CC___CC___
11. _Cabiria
____________CCCT______TT___CC_________
12. _RUQ_1637
___CC___CTAC___GG_________CCTTCCCC
13. _RUQ_1637
AG___CC___CC______GGAAAACC___CCGG
14. _RUQ_1637
____________CC-______TT___CC___CCCC
15. _RUQ_1637
____________CCCT______TT___CC___CC___
16. _MITC-000809
AG___CC___CC______GGAAAACC___CCGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1. _GC-01-134-7-11
AGCT_________GGAA___AGTTCTGGGG___
2. _GC-01-134-7-11
AGCT_________GGAA___AGTTCTGGGG___
3. _GC-01-134-7-11
AGCC_________AAGG___AATTCCGTGG___
4. _GC-01-134-7-11
AGCT_________GGAA___AGTTCTGGGG___
5. _GC-01-134-7-11
AGCT_________GGAA___AGTTCTGGGG___
6. _1711_1
___CT_________GG_______________GG______
7. _1711_2
___CT_________GG_______________GG______
8. _1711_5
___CT_________GG_______________GG______
9. _1711_6
___CT_________GG_______________GG______
10. _1711_4
___CC_________AA_______________GT______
11. _Cabiria
___CT_________AG_______________GG______
12. _RUQ_1637
______TTAGCGAG___CG______TTGGGGCT
13. _RUQ_1637
___AG____________GG___AA______CCGG___
14. _RUQ_1637
___CT________________________TTGGGG___
15. _RUQ_1637
___CT_________AG_______________GG______
16. _MITC-000809
___AG____________GG___AA______CCGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1. _GC-01-134-7-11
GTTTGT___AC___GGAAGGCCCCCCAGTT
2. _GC-01-134-7-11
GTTTGT___AC___GGAAGGCCCCCCAGTT
3. _GC-01-134-7-11
TTGTGT___AC___GG___CCCGCCCCGGTT
4. _GC-01-134-7-11
GTTTGT___AC___GGAAGGCCCCCCAGTT
5. _GC-01-134-7-11
GTTTGT___AC___GGAAGGCCCCCCAGTT
6. _1711_1
________________________GG___CC______TT
7. _1711_2
________________________GG___CC______TT
8. _1711_5
________________________GG___CC______TT
9. _1711_6
________________________GG___CC______TT
10. _1711_4
________________________CC___CC______TT
11. _Cabiria
________________________GG___CC______TT
12. _RUQ_1637
_________CTACAATT___GG_________AG___
13. _RUQ_1637
ACAAAC___AC___CCAGCC___GGGGAGAA
14. _RUQ_1637
______GT___AC_________GGCCCC___AA___
15. _RUQ_1637
________________________GG___CC______TT
16. _MITC-000809
ACAAAC___AC___CCAGCC___GGGGAGAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1. _GC-01-134-7-11
GGCT___AACTAGTT______TTCC___CTAA
2. _GC-01-134-7-11
GGCT___AACTAGTT______TTCC___CTAA
3. _GC-01-134-7-11
GGCT___AACCAACT______CTCG___CTAA
4. _GC-01-134-7-11
GGCT___AACTAGTT______TTCC___CTAA
5. _GC-01-134-7-11
GGCT___AACTAGTT______TTCC___CTAA
6. _1711_1
GG______AACTAG__________________CTAA
7. _1711_2
GG______AACTAG__________________CTAA
8. _1711_5
GG______AACTAG__________________CTAA
9. _1711_6
GG______AACTAG__________________CTAA
10. _1711_4
GG______AACCAA__________________CTAA
11. _Cabiria
GG______AACTAG__________________CTAA
12. _RUQ_1637
______CC______AGTTTTAA______CC___AA
13. _RUQ_1637
GGAG___AAAGAG_________AA______AGAA
14. _RUQ_1637
_______________AGTT_______________CT___
15. _RUQ_1637
GG______AACTAG__________________CTAA
16. _MITC-000809
GGAG___AAAGAG_________AA______AGAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1. _GC-01-134-7-11
GTAACCAG___ATCTTTTTCTGT_________
2. _GC-01-134-7-11
GTAACCAG___ATCTTTTTCTGT_________
3. _GC-01-134-7-11
GGAACCAG___TTCTTTTTCCGT_________
4. _GC-01-134-7-11
GTAACCAG___ATCTTTTTCTGT_________
5. _GC-01-134-7-11
GTAACCAG___ATCTTTTTCTGT_________
6. _1711_1
___AA____________CT______CT____________
7. _1711_2
___AA____________CT______CT____________
8. _1711_5
___AA____________CT______CT____________
9. _1711_6
___AA____________CT______CT____________
10. _1711_4
___AA____________CT______CC____________
11. _Cabiria
___AA____________CT______CT____________
12. _RUQ_1637
____________TT___CT____________TTACCC
13. _RUQ_1637
ACAAGGAG_________AAAA___AC_________
14. _RUQ_1637
GT______AG___AT________________________
15. _RUQ_1637
___AA____________CT______CT____________
16. _MITC-000809
ACAAGGAG_________AAAA___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1. _GC-01-134-7-11
CCTTCC______TTAAGG______TTCTCTCG
2. _GC-01-134-7-11
CCTTCC______TTAAGG______TTCTCTCG
3. _GC-01-134-7-11
ACGTCT______TTAAGG______TTCTCTGG
4. _GC-01-134-7-11
CCTTCC______TTAAGG______TTCTCTCG
5. _GC-01-134-7-11
CCTTCC______TTAAGG______TTCTCTCG
6. _1711_1
___TTCC_________AA_________TT___CTCG
7. _1711_2
___TTCC_________AA_________TT___CTCG
8. _1711_5
___TTCC_________AA_________TT___CTCG
9. _1711_6
___TTCC_________AA_________TT___CTCG
10. _1711_4
___GTCT_________AA_________TT___CTGG
11. _Cabiria
___TT____________AA_________TT___CTGG
12. _RUQ_1637
___TT___GGTT_________GGGG_________CG
13. _RUQ_1637
___AAGG______AGAAGG______AAAGAGCC
14. _RUQ_1637
___TT_________CT_______________CTCTCG
15. _RUQ_1637
___TTCC_________AA_________TT___CT___
16. _MITC-000809
___AAGG______AGAAGG______AAAGAGCC
 127 128 129 130 131 132 133 134 135      
1. _GC-01-134-7-11
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
2. _GC-01-134-7-11
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
3. _GC-01-134-7-11
GGCT______CCAGCCAGAAX_XX_XX_XX_XX_X
4. _GC-01-134-7-11
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
5. _GC-01-134-7-11
AGCT______ACAGAAAAAAX_XX_XX_XX_XX_X
6. _1711_1
AGCT_____________________X_XX_XX_XX_XX_X
7. _1711_2
AGCT_____________________X_XX_XX_XX_XX_X
8. _1711_5
AGCT_____________________X_XX_XX_XX_XX_X
9. _1711_6
AGCT_____________________X_XX_XX_XX_XX_X
10. _1711_4
GGCT_____________________X_XX_XX_XX_XX_X
11. _Cabiria
___________________________X_XX_XX_XX_XX_X
12. _RUQ_1637
______CTAT_______________X_XX_XX_XX_XX_X
13. _RUQ_1637
AGAG______AC___AAAAAAX_XX_XX_XX_XX_X
14. _RUQ_1637
AG________________________X_XX_XX_XX_XX_X
15. _RUQ_1637
AGCT_____________________X_XX_XX_XX_XX_X
16. _MITC-000809
AGAG______AC___AAAAAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CC_137 GC-01-134-7-11
Location: Tree: 1
Notes: 1
 Mars, 2018
2._CC_137 GC-01-134-7-11
Location: Tree: 2
Notes: 2
 Mars, 2018
3._CC_137 GC-01-134-7-11
Location: Tree: 4
Notes: 4
 Mars, 2018
4._CC_137 GC-01-134-7-11
Location: Tree: 5
Notes: 5
 Mars, 2018
5._CC_137 GC-01-134-7-11
Location: Tree: 6
Notes: 6
 Mars, 2018
6._CC_137
Location: 1711 1
 Dapeng Zhang, 2016
7._CC_137
Location: 1711 2
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016
8._CC_137
Location: 1711 5
 Dapeng Zhang, 2016
9._CC_137
Location: 1711 6
 Dapeng Zhang, 2016
10._CC_137
Location: 1711 4
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

11._CC_137
Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

12._CC_137 RUQ 1637
 Lambert Motilal, 2023
13._CC_137 RUQ 1637
Notes: Reading_Collection
 Mars, 2018
14._CC_137 RUQ 1637
 Dapeng Zhang, 2014
15._CC_137 RUQ 1637
 Dapeng Zhang, 2016

USDA-SHRS United States of America

16._CC_137 MITC-000809
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133