SNP Profiles of ICS 1   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._ICS 1___
______GGGGAT___GG______CTCTAACC___
2._ICS 1___
______GGGGAT___GG______CTCTAACC___
3._ICS 1___
______GGGGAT___GG______CTCTAACC___
4._ICS 1___
______GGGGAT___GG______CTCTAACC___
5._ICS 1___
______GGGGAT___GG______CTCTAACC___
6._ICS 1___
______GGGGAT___GG______CTCTAACC___
7._ICS 1___
______GG___AT___________________________
8._ICS 1___
______GG___AT___________________________
9._ICS 1___
______GG___AT___________________________
10._ICS 1___
______GG___AT___________________________
11._ICS 1___
______GG___AT___________________________
12._ICS 1___
______GG___AT___________________________
13._ICS 1___
__________________________________________
14._ICS 1___
______GG___AT___________________________
15._ICS 1___
__________________________________________
16._ICS 1___
TTCC_________CT___ACGG____________GT
17._ICS 1___
TTCC_________CT___ACGG____________GT
18._ICS 1___
______GGCCAT___GG______AGAGAAGG___
19._ICS 1___
______________________________CTAA______
20._ICS 1___
______GG___AT___________________________
21._ICS 1___
______GG___AT___________________________
22._ICS 1___
______GG___AT___________________________
23._ICS 1___
______GGCCAT___GG______AGAGAAGG___
24._ICS 1___
______GGCCAT___GG______AGAGAAGG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
2._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
3._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
4._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
5._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
6._ICS 1___
___AAGTCCAAAG______AA___CGAGGGCT
7._ICS 1___
___AAGTCC____________AA___CGAG___CT
8._ICS 1___
___AAGTCC____________AA___CGAG___CT
9._ICS 1___
___AAGTCC____________AA___CGAG___CT
10._ICS 1___
___AAGTCC____________AA___CGAG___CT
11._ICS 1___
___AAGTCC____________AA___CGAG___CT
12._ICS 1___
___AAGTCC____________AA___CGAG___CT
13._ICS 1___
___CC___CT___AG______AC___CGAG______
14._ICS 1___
___ACGTCC____________AA___CCAA___CC
15._ICS 1___
___AA___CC___AG______AA___CGAG______
16._ICS 1___
ATAA____________CTAG___GT___AG______
17._ICS 1___
ATAA____________CTAG___GT___AG______
18._ICS 1___
___AAACGGTTAG______AA___CGAGGGAG
19._ICS 1___
___AAGTCC___AG______AA___CGAG___CT
20._ICS 1___
___AAGTCC____________AA___CGAG___CT
21._ICS 1___
___AAGTCC____________AA___CGAG___CT
22._ICS 1___
___AAGTCC____________AA___CGAG___CT
23._ICS 1___
___AAACGGTTAG______AA___CGAGGGAG
24._ICS 1___
___AAACGGTTAG______AA___CGAGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
2._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
3._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
4._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
5._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
6._ICS 1___
______ATAG___AAATCTAG___GGAACGAG
7._ICS 1___
__________________AT_________GG______AG
8._ICS 1___
__________________AT_________GG______AG
9._ICS 1___
__________________AT_________GG______AG
10._ICS 1___
__________________AT_________GG______AG
11._ICS 1___
__________________AT_________GG______AG
12._ICS 1___
__________________AT_________GG______AG
13._ICS 1___
_______________AGTTCT____________GG___
14._ICS 1___
__________________AA_________GG______AG
15._ICS 1___
_______________AAATCT____________CG___
16._ICS 1___
TTAC___AGCC____________CT____________
17._ICS 1___
TTAC___AGCC____________CT____________
18._ICS 1___
______ATAG___AAATAGAG___GGAACG___
19._ICS 1___
_________AG___AAAT_______________CGAG
20._ICS 1___
__________________AT_________GG______AG
21._ICS 1___
__________________AT_________GG______AG
22._ICS 1___
__________________AT_________GG_________
23._ICS 1___
______ATAG___AAATAGAG___GGAACG___
24._ICS 1___
______ATAG___AAATAGAG___GGAACG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._ICS 1___
______CC___CCTT___GGTTAACC___ACCT
2._ICS 1___
______CC___CCTT___GGTTAACC___ACCT
3._ICS 1___
______CC___CCTT___GGTTAACC___ACCT
4._ICS 1___
______CC___CCTT___GGTTAACC___ACCT
5._ICS 1___
______CC___CCTT___GGTTAA______ACCT
6._ICS 1___
______CC___CCTT___GGTTAACC___ACCT
7._ICS 1___
____________CCTT______TT___CC___AC___
8._ICS 1___
____________CCTT______TT___CC___AC___
9._ICS 1___
____________CCTT______TT___CC___AC___
10._ICS 1___
____________CCTT______TT___CC___AC___
11._ICS 1___
____________CCTT______TT_________AC___
12._ICS 1___
____________CCTT______TT___CC___AC___
13._ICS 1___
______________________________CC___CCCC
14._ICS 1___
____________AACT______GG___CG___CC___
15._ICS 1___
______________________________CC___ACCT
16._ICS 1___
___AC___CTAC___AA_________CCAAACCT
17._ICS 1___
___AC___CTAC___AA_________CCAAACCT
18._ICS 1___
AA___CC___CC______GGAAAACC___ACAG
19._ICS 1___
____________CCTT______TT___CC___AACT
20._ICS 1___
____________CCTT______TT___CC___AC___
21._ICS 1___
____________CCCT______TT___CC___AC___
22._ICS 1___
____________CCTT______TT___CC___AC___
23._ICS 1___
AA___CC___CC______GGAAAACC___ACAG
24._ICS 1___
AA___CC___CC______GGAAAACC___ACAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
2._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
3._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
4._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
5._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
6._ICS 1___
GGTT_________GGAG___AGCTCCGTGG___
7._ICS 1___
___TT_________GG_______________GT______
8._ICS 1___
___TT_________GG_______________GT______
9._ICS 1___
___TT_________GG_______________GT______
10._ICS 1___
___TT_________GG_______________GT______
11._ICS 1___
___TT_________GG_______________GT______
12._ICS 1___
___TT_________GG_______________GT______
13._ICS 1___
AG_______________________________________
14._ICS 1___
___TT_________AA_______________GG______
15._ICS 1___
GG_______________________________________
16._ICS 1___
______CTAAGGGG___CG______CTGTGGCT
17._ICS 1___
______CTAAGGGG___CG______CTGTGGCT
18._ICS 1___
___AA____________AG___AG______ACGG___
19._ICS 1___
___TT________________________CTGTGG___
20._ICS 1___
___TT_________GG_______________GT______
21._ICS 1___
___CT_________GG_______________GT______
22._ICS 1___
___TT_________GG_______________GT______
23._ICS 1___
___AA____________AG___AG______ACGG___
24._ICS 1___
___AA____________AG___AG______ACGG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
2._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
3._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
4._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
5._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
6._ICS 1___
GTGTGT___AC___GGAACGCGCCCCAATT
7._ICS 1___
________________________CG___CC______TT
8._ICS 1___
________________________CG___CC______TT
9._ICS 1___
________________________CG___CC______TT
10._ICS 1___
________________________CG___CC______TT
11._ICS 1___
________________________CG___CC______TT
12._ICS 1___
________________________CG___CC______TT
13._ICS 1___
GT__________________AGCGGGCT_________
14._ICS 1___
________________________GG___CC______TT
15._ICS 1___
GT__________________AGCGCGCC_________
16._ICS 1___
_________CTACAATT___CG_________AA___
17._ICS 1___
_________CTACAATT___CG_________AA___
18._ICS 1___
ACACAC___AC___CCAGCG___GGGGAAAA
19._ICS 1___
______GT___AC_________CGCGCC_________
20._ICS 1___
________________________CG___CC______TT
21._ICS 1___
________________________CG___CC______TT
22._ICS 1___
______________________________CC______TT
23._ICS 1___
ACACAC___AC___CCAGCG___GGGGAAAA
24._ICS 1___
ACACAC___AC___CCAGCG___GGGGAAAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
2._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
3._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
4._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
5._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
6._ICS 1___
GGTT___AATTAGCT______CTCC___TTAA
7._ICS 1___
GG______AATTAG__________________TTAA
8._ICS 1___
GG______AATTAG__________________TTAA
9._ICS 1___
GG______AATTAG__________________TTAA
10._ICS 1___
GG______AATTAG__________________TTAA
11._ICS 1___
GG______AATTAG__________________TTAA
12._ICS 1___
GG______AATTAG__________________TTAA
13._ICS 1___
____________CT_______________CC___CC___
14._ICS 1___
CG______AATTAG__________________CCGG
15._ICS 1___
____________TT_______________CC___TT___
16._ICS 1___
______CG______AGCTCTAT______CT___AA
17._ICS 1___
______CG______AGCTCTAT______CT___AA
18._ICS 1___
GGAA___AAAAAG_________AG______AAAA
19._ICS 1___
_______________AG__________________TT___
20._ICS 1___
GG______AATTAG__________________TTAA
21._ICS 1___
GG______AATTAG__________________TTAA
22._ICS 1___
GG______AATTAG__________________TTAA
23._ICS 1___
GGAA___AAAAAG_________AG______AAAA
24._ICS 1___
GGAA___AAAAAG_________AG______AAAA
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
2._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
3._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
4._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
5._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
6._ICS 1___
GTAACCAA___AATTTTTTCTGG_________
7._ICS 1___
___AA____________TT______CT____________
8._ICS 1___
___AA____________TT______CT____________
9._ICS 1___
___AA____________TT______CT____________
10._ICS 1___
___AA____________TT______CT____________
11._ICS 1___
___AA____________TT______CT____________
12._ICS 1___
___AA____________TT______CT____________
13._ICS 1___
_________GG___TT________________________
14._ICS 1___
___AA____________CC______CC____________
15._ICS 1___
_________AA___AA________________________
16._ICS 1___
____________TT___TT____________GTACCT
17._ICS 1___
____________TT___TT____________GTACCT
18._ICS 1___
ACAAGGAA_________AAAA___CC_________
19._ICS 1___
GT______AA___AA________________________
20._ICS 1___
___AA____________TT______CT____________
21._ICS 1___
___AA____________CT______CT____________
22._ICS 1___
___AA____________TT______CT____________
23._ICS 1___
ACAAGGAA_________AAAA___CC_________
24._ICS 1___
ACAAGGAA_________AAAA___CC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
2._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
3._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
4._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
5._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
6._ICS 1___
CCTTCC______TTAAGG______TTTTCTGG
7._ICS 1___
___TTCC_________AA_________TT___CTGG
8._ICS 1___
___TTCC_________AA_________TT___CTGG
9._ICS 1___
___TTCC_________AA_________TT___CTGG
10._ICS 1___
___TTCC_________AA_________TT___CTGG
11._ICS 1___
___TTCC_________AA_________TT___CTGG
12._ICS 1___
___TTCC_________AA_________TT___CTGG
13._ICS 1___
_________________________________CT___CG
14._ICS 1___
___TTTT_________AC_________TT___CTGG
15._ICS 1___
_________________________________TT___CC
16._ICS 1___
___TT___TTTT_________GGGG_________GG
17._ICS 1___
___TT___TTTT_________GGGG_________GG
18._ICS 1___
___AAGG______AGAAGG______AAAAAGCC
19._ICS 1___
___TT_________CT_______________TTCTGG
20._ICS 1___
___TTCC_________AA_________TT___CTGG
21._ICS 1___
___TTCC_________AA_________TT___CTGG
22._ICS 1___
___TTCC_________AA_________TT___CTGG
23._ICS 1___
___AAGG______AGAAGG______AAAAAGCC
24._ICS 1___
___AAGG______AGAAGG______AAAAAGCC
 127 128 129 130 131 132 133 134 135      
1._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
2._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
3._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
4._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
5._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
6._ICS 1___
AATT______CCAAACGGAAX_XX_XX_XX_XX_X
7._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
8._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
9._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
10._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
11._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
12._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
13._ICS 1___
___________________________X_XX_XX_XX_XX_X
14._ICS 1___
GGCT_____________________X_XX_XX_XX_XX_X
15._ICS 1___
___________________________X_XX_XX_XX_XX_X
16._ICS 1___
______TTAT_______________X_XX_XX_XX_XX_X
17._ICS 1___
______TTAT_______________X_XX_XX_XX_XX_X
18._ICS 1___
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X
19._ICS 1___
AA________________________X_XX_XX_XX_XX_X
20._ICS 1___
AGTT_____________________X_XX_XX_XX_XX_X
21._ICS 1___
AGTT_____________________X_XX_XX_XX_XX_X
22._ICS 1___
AATT_____________________X_XX_XX_XX_XX_X
23._ICS 1___
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X
24._ICS 1___
AAAA______CC___ACGGAAX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._ICS_1 NA

Location: Tree: 1
Notes: 1
 Mars, 2018

2._ICS_1 NA

Location: Tree: 3
Notes: 3
 Mars, 2018

3._ICS_1 NA

Location: Tree: 5
Notes: 5
 Mars, 2018

4._ICS_1 NA

Location: Tree: 6
Notes: 6
 Mars, 2018

5._ICS_1 NA

Location: Tree: 7
Notes: 7
 Mars, 2018

6._ICS_1 NA

Location: Tree: 8
Notes: 8
 Mars, 2018

7._ICS_1

Location: 8903 1
 Dapeng Zhang, 2016

8._ICS_1

Location: 8903 3
 Dapeng Zhang, 2016

9._ICS_1

Location: 8903 5
 Dapeng Zhang, 2016

10._ICS_1

Location: 8903 6
 Dapeng Zhang, 2016

11._ICS_1

Location: 8903 7
 Dapeng Zhang, 2016

12._ICS_1

Location: 8903 8
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

13._ICS_1

 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

14._ICS_1

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

15._ICS_1 RUQ 847

 Jocelyn De Wever et al., 2019

16._ICS_1 RUQ 847

 Lambert Motilal, 2023
Population Assignment: 

17._ICS_1 RUQ 847B

 Lambert Motilal, 2023

18._ICS_1 RUQ 847

Notes: Reading_Collection
 Mars, 2018

19._ICS_1 RUQ 847

 Dapeng Zhang, 2014

20._ICS_1 RUQ 847

 Dapeng Zhang, 2016

21._ICS_1 RUQ 847

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._ICS_1

Location: San Juan Block4
 Dapeng Zhang, 2016

USDA-SHRS United States of America

23._ICS_1 MITC-000297

 Mars, 2018

USDA-TARS United States of America

24._ICS_1 ICS 1_Fld#_73_Plt#_2

Location: Field: 73, Tree: 2
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133