SNP Profiles of IMC 47   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 47___
______CGGTAT___GG______CTCTACCT___
2._IMC 47___
______CGGTAT___GG______CTCTACCT___
3._IMC 47___
______CGGTAT___GG______CTCTACCT___
4._IMC 47___
______CGGTAT___GG______CTCTACCT___
5._IMC 47___
______CGGTAT___GG______CTCTACCT___
6._IMC 47___
______CGGTAT___GG______CTCTACCT___
7._IMC 47___
______CGGTAT___GG______CTCTACCT___
8._IMC 47___
______CGGTAT___GG______CTCTACCT___
9._IMC 47___
______CGGTAT___GG______CTCTACCT___
10._IMC 47___
______CGACAT___GG______AGAGACAG___
11._IMC 47___
______CG___AT___________________________
12._IMC 47___
______CG___AT___________________________
13._IMC 47___
______CG___AT___________________________
14._IMC 47___
______CG___AT___________________________
15._IMC 47___
______CG___AT___________________________
16._IMC 47___
______CG___AT___________________________
17._IMC 47___
______CG___AT___________________________
18._IMC 47___
______CG___AT___________________________
19._IMC 47___
______CG___AT___________________________
20._IMC 47___
CTCC_________TT___CCGG____________GT
21._IMC 47___
______________________________TTCC______
22._IMC 47___
______CG___AT___________________________
23._IMC 47___
______GG___TT___________________________
24._IMC 47___
______GG___AA___________________________
25._IMC 47___
______CG___AT___________________________
26._IMC 47___
______CGCCAT___AG______GGAACCAA___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
2._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
3._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
4._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
5._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
6._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
7._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
8._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
9._IMC 47___
___AAGGCTATGG______AC___CGAGGGCT
10._IMC 47___
___AACCAGATGG______AC___CGAGGGAG
11._IMC 47___
___AAGGCT____________AC___CGAG___CT
12._IMC 47___
___AAGGCT____________AC___CGAG___CT
13._IMC 47___
___AAGGCT____________AC___CGAG___CT
14._IMC 47___
___AAGGCT____________AC___CGAG___CT
15._IMC 47___
___AAGGCT____________AC___CGAG___CT
16._IMC 47___
___AAGGCT____________AC___CGAG___CT
17._IMC 47___
___AAGGCT____________AC___CGAG___CT
18._IMC 47___
___AAGGCT____________AC___CGAG___CT
19._IMC 47___
___AAGGCT____________AC___CGAG___CT
20._IMC 47___
ATCC____________CCGG___GG___AG______
21._IMC 47___
___CCTTCT___GG______AC___CGAG___CT
22._IMC 47___
___CCGTCT____________AC___CGAG___CT
23._IMC 47___
___CCGTCT____________AC______AG___TT
24._IMC 47___
___CCGTCT____________AC______AG___CT
25._IMC 47___
___CCTTCT____________AC___CCAG___CT
26._IMC 47___
___CCAAAGATGG______AC___CGAGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
2._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
3._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
4._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
5._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
6._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
7._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
8._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
9._IMC 47___
______ATAA___AGATCTAG___AGAAGGAG
10._IMC 47___
______ATAA___AGATAGAG___AGAACC___
11._IMC 47___
__________________AT_________AG______AG
12._IMC 47___
__________________AT_________AG______AG
13._IMC 47___
__________________AT_________AG______AG
14._IMC 47___
__________________AT_________AG______AG
15._IMC 47___
__________________AT_________AG______AG
16._IMC 47___
__________________AT_________AG______AG
17._IMC 47___
__________________AT_________AG______AG
18._IMC 47___
__________________AT_________AG______AG
19._IMC 47___
__________________AT_________AG______AG
20._IMC 47___
TTAC___GGCC____________CC____________
21._IMC 47___
_________GG___GGAT_______________CCAA
22._IMC 47___
__________________AT_________AG______AA
23._IMC 47___
__________________AA_________GG______AA
24._IMC 47___
__________________AT_________AG______AG
25._IMC 47___
__________________AT_________AG______AA
26._IMC 47___
______ATGG___GGATAGAG___AGATGG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
2._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
3._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
4._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
5._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
6._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
7._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
8._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
9._IMC 47___
______AC___ACCT___AGGTAGCG___ACCC
10._IMC 47___
AG___AC___AC______AGACAGCG___ACGG
11._IMC 47___
____________ACCT______GT___CG___AC___
12._IMC 47___
____________ACCT______GT___CG___AC___
13._IMC 47___
____________ACCT______GT___CG___AC___
14._IMC 47___
____________ACCT______GT___CG___AC___
15._IMC 47___
____________ACCT______GT___CG___AC___
16._IMC 47___
____________ACCT______GT___CG___AC___
17._IMC 47___
____________ACCT______GT___CG___AC___
18._IMC 47___
____________ACCT______GT___CG___AC___
19._IMC 47___
____________ACCT______GT___CG___AC___
20._IMC 47___
___AA___CCAC___AA_________GGAAACCC
21._IMC 47___
____________ACCC______GG___CG___ACCC
22._IMC 47___
____________ACCC______GG___GG___AC___
23._IMC 47___
____________CCCT______GT___GG___AA___
24._IMC 47___
____________ACCT______GT___CC___AC___
25._IMC 47___
____________ACCC______GG___GG___AC___
26._IMC 47___
GG___AA___AC______AGCCGGCG___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
2._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
3._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
4._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
5._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
6._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
7._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
8._IMC 47___
AGTT_________AAAA___AACTCTGTAG___
9._IMC 47___
AGTT_________AAAA______CTCTGTAG___
10._IMC 47___
___AA____________AA___AA______ACAG___
11._IMC 47___
___TT_________AA_______________GT______
12._IMC 47___
___TT_________AA_______________GT______
13._IMC 47___
___TT_________AA_______________GT______
14._IMC 47___
___TT_________AA_______________GT______
15._IMC 47___
___TT_________AA_______________GT______
16._IMC 47___
___TT_________AA_______________GT______
17._IMC 47___
___TT_________AA_______________GT______
18._IMC 47___
___TT_________AA_______________GT______
19._IMC 47___
___TT_________AA_______________GT______
20._IMC 47___
______TTAGCCAA___CG______TTGGAGTT
21._IMC 47___
___CC________________________TTGGAG___
22._IMC 47___
___CC_________AA_______________GG______
23._IMC 47___
___CC_________AA_______________GG______
24._IMC 47___
___TT_________AG_______________GG______
25._IMC 47___
___CC_________AA_______________GG______
26._IMC 47___
___GG____________AA___AA______CCAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
2._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
3._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
4._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
5._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
6._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
7._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
8._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
9._IMC 47___
GTGGTT___AC___CGAACCCCCTCCAGCT
10._IMC 47___
ACCCAA___AC___CGAAGG___AGGGAGAG
11._IMC 47___
________________________CC___CT______CT
12._IMC 47___
________________________CC___CT______CT
13._IMC 47___
________________________CC___CT______CT
14._IMC 47___
________________________CC___CT______CT
15._IMC 47___
________________________CC___CT______CT
16._IMC 47___
________________________CC___CT______CT
17._IMC 47___
________________________CC___CT______CT
18._IMC 47___
________________________CC___CT______CT
19._IMC 47___
________________________CC___CT______CT
20._IMC 47___
_________TTACATCT___CC_________GG___
21._IMC 47___
______TT___AC_________CCCCTT_________
22._IMC 47___
________________________CC___CT______CC
23._IMC 47___
________________________CC___CT______CC
24._IMC 47___
________________________CC___CT______CT
25._IMC 47___
________________________CC___TT______CC
26._IMC 47___
AAACAA___AC___CCAGGG___AAGGGGGG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
2._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
3._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
4._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
5._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
6._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
7._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
8._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
9._IMC 47___
CGCT___ATCTAGCC______TTCC___CTAG
10._IMC 47___
CGAG___ATAGAG_________AA______AGAG
11._IMC 47___
CG______ATCTAG__________________CTAG
12._IMC 47___
CG______ATCTAG__________________CTAG
13._IMC 47___
CG______ATCTAG__________________CTAG
14._IMC 47___
CG______ATCTAG__________________CTAG
15._IMC 47___
CG______ATCTAG__________________CTAG
16._IMC 47___
CG______ATCTAG__________________CTAG
17._IMC 47___
CG______ATCTAG__________________CTAG
18._IMC 47___
CG______ATCTAG__________________CTAG
19._IMC 47___
CG______ATCTAG__________________CTAG
20._IMC 47___
______CG______AACCCTAA______CC___GG
21._IMC 47___
_______________AACC_______________CC___
22._IMC 47___
GG______AATTAG__________________CCGG
23._IMC 47___
GG______ATTTAA__________________CTGG
24._IMC 47___
CG______ATCTAA__________________CCAG
25._IMC 47___
GG______AATTAA__________________CCGG
26._IMC 47___
GGGG___AAAAAA_________AA______GGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
2._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
3._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
4._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
5._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
6._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
7._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
8._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
9._IMC 47___
GGAACTAG___ATCTTTCTCTGT______AC
10._IMC 47___
CCAAAGAG_________AAAG___AC_________
11._IMC 47___
___AA____________CT______CT____________
12._IMC 47___
___AA____________CT______CT____________
13._IMC 47___
___AA____________CT______CT____________
14._IMC 47___
___AA____________CT______CT____________
15._IMC 47___
___AA____________CT______CT____________
16._IMC 47___
___AA____________CT______CT____________
17._IMC 47___
___AA____________CT______CT____________
18._IMC 47___
___AA____________CT______CT____________
19._IMC 47___
___AA____________CT______CT____________
20._IMC 47___
____________CT___CC____________GTAA___
21._IMC 47___
GG______GG___TT________________________
22._IMC 47___
___AT____________CC______CT____________
23._IMC 47___
___AA____________CC______CC____________
24._IMC 47___
___AA____________CT______CT____________
25._IMC 47___
___AT____________CC______CT____________
26._IMC 47___
CCATAGGG_________AAAG___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
2._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
3._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
4._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
5._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
6._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
7._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
8._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
9._IMC 47___
GTCC_________ACAG______CTCTTTCGAA
10._IMC 47___
ACGG______GGACAG______AGAGAACGAA
11._IMC 47___
GTCC_________AC_________CT___TTCGAA
12._IMC 47___
GTCC_________AC_________CT___TTCGAA
13._IMC 47___
GTCC_________AC_________CT___TTCGAA
14._IMC 47___
GTCC_________AC_________CT___TTCGAA
15._IMC 47___
GTCC_________AC_________CT___TTCGAA
16._IMC 47___
GTCC_________AC_________CT___TTCGAA
17._IMC 47___
GTCC_________AC_________CT___TTCGAA
18._IMC 47___
GTCC_________AC_________CT___TTCGAA
19._IMC 47___
GTCC_________AC_________CT___TTCGAA
20._IMC 47___
GT___GGAT_________AAAG_________CG___
21._IMC 47___
GT_________CT_______________CCTTCGAG
22._IMC 47___
GTTT_________CC_________CT___TTCGAG
23._IMC 47___
GTTT_________CC_________CT___TTGGAG
24._IMC 47___
GTCT_________AC_________TT___TTCGAA
25._IMC 47___
GTTT_________CC_________CT___TTCGAG
26._IMC 47___
AAAA______AGCCGG______AGGGAACGAG
 127 128 129 130 131 132 133 134       
1._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
2._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
3._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
4._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
5._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
6._IMC 47___
_________CCAAACGGACX_XX_XX_XX_XX_XX_X
7._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
8._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
9._IMC 47___
CT______CCAAACGGACX_XX_XX_XX_XX_XX_X
10._IMC 47___
AG______CC___ACGGACX_XX_XX_XX_XX_XX_X
11._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
12._IMC 47___
________________________X_XX_XX_XX_XX_XX_X
13._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
14._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
15._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
16._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
17._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
18._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
19._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
20._IMC 47___
___TTAA_______________X_XX_XX_XX_XX_XX_X
21._IMC 47___
________________________X_XX_XX_XX_XX_XX_X
22._IMC 47___
CC_____________________X_XX_XX_XX_XX_XX_X
23._IMC 47___
CC_____________________X_XX_XX_XX_XX_XX_X
24._IMC 47___
CT_____________________X_XX_XX_XX_XX_XX_X
25._IMC 47___
CC_____________________X_XX_XX_XX_XX_XX_X
26._IMC 47___
GG______AC___ACAGACX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_47 GC-08-103-3-02

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._IMC_47 GC-08-103-3-02

Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._IMC_47 GC-08-103-3-02

Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_47 GC-08-103-3-02

Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

5._IMC_47 GC-08-103-3-02

Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

6._IMC_47 GC-08-103-3-02

Location: Tree: 7
Notes: 7
 Mars, 2018

7._IMC_47 GC-08-103-3-02

Location: Tree: 10
Notes: 10
 Mars, 2018

8._IMC_47 GC-08-103-3-02

Location: Tree: 11
Notes: 11
 Mars, 2018

9._IMC_47 GC-08-103-3-02

Location: Tree: 12
Notes: 12
 Mars, 2018

10._IMC_47 GC-08-103-3-2

Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

11._IMC_47

Location: 8302 4
 Dapeng Zhang, 2016

12._IMC_47

Location: 8302 7
 Dapeng Zhang, 2016

13._IMC_47

Location: 8302 10
 Dapeng Zhang, 2016

14._IMC_47

Location: 8302 11
 Dapeng Zhang, 2016

15._IMC_47

Location: 8302 12
 Dapeng Zhang, 2016

16._IMC_47

Location: 8302 1 > FP
 Dapeng Zhang, 2016

17._IMC_47

Location: 8302 3 > FP
 Dapeng Zhang, 2016

18._IMC_47

Location: 8302 5 > FP
 Dapeng Zhang, 2016

19._IMC_47

Location: 8302 6 > FP
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

20._IMC_47 RUQ 849B

 Lambert Motilal, 2023
Population Assignment: 

21._IMC_47 RUQ 849

 Dapeng Zhang, 2014

22._IMC_47 RUQ 849

 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

23._IMC_47

Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47

Location: 6B F401 T1
 Dapeng Zhang, 2016

25._IMC_47

Location: 6B F401 T6
 Dapeng Zhang, 2016

USDA-SHRS United States of America

26._IMC_47 MITC-000413

 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133