SNP Profiles of IMC 67   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 67___
______GGGGTT____________CCTTCCTT___
2._IMC 67___
______GGGGTT___GG______CCTTCCTT___
3._IMC 67___
______GGGGTT___GG______CCTTCCTT___
4._IMC 67___
______GGGGTT___GG______CCTTCCTT___
5._IMC 67___
______GGGGTT___GG______CCTTCCTT___
6._IMC 67___
______GGCCTT___GG______GGAACCAA___
7._IMC 67___
______GGCCTT___GG______GGAACCAA___
8._IMC 67___
______GG___TT___________________________
9._IMC 67___
______GG___TT___________________________
10._IMC 67___
______GG___TT___________________________
11._IMC 67___
______GG___TT___________________________
12._IMC 67___
______GG___TT___________________________
13._IMC 67___
__________________________________________
14._IMC 67___
______GG___TT___________________________
15._IMC 67___
______GG___TT___________________________
16._IMC 67___
CTCC_________TT___CCGG____________GT
17._IMC 67___
______GGCCTT___GG______GGAACCAA___
18._IMC 67___
______________________________TTCC______
19._IMC 67___
______GG___TT___________________________
20._IMC 67___
______GG___TT___________________________
21._IMC 67___
______GG___TT___________________________
22._IMC 67___
______GG___TT___________________________
23._IMC 67___
______GGCCTT___GG______GGAACCAA___
24._IMC 67___
______CGCCAA___GG______GGAAACAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 67___
___CCGTCT___GG______AC___CGAG___CT
2._IMC 67___
___CCGTCT___GG______AC___CGAG___CT
3._IMC 67___
___CCGTCT___GG______AC___CGAG___CT
4._IMC 67___
___CCGTCT___GG______AC___CGAG___CT
5._IMC 67___
___CCGTCTTTGG______AC___CGAGGGCT
6._IMC 67___
___CCACAGAAGG______AC___CGAGGGAG
7._IMC 67___
___CCACAGAAGG______AC___CGAGGGAG
8._IMC 67___
___CCGTCT____________AC___CGAG___CT
9._IMC 67___
___CCGTCT____________AC___CGAG___CT
10._IMC 67___
___CCGTCT____________AC___CGAG___CT
11._IMC 67___
___CCGTCT____________AC___CGAG___CT
12._IMC 67___
___CCGTCT____________AC___CGAG___CT
13._IMC 67___
___AA___CT___GG______AC___GGAA______
14._IMC 67___
___CCGTCT____________AC___CGAG___CT
15._IMC 67___
___CCGTCT____________AC___CGAG___CT
16._IMC 67___
AACC____________CTGG___GG___AG______
17._IMC 67___
___CCACAGAAGG______AC___CGAGGGAG
18._IMC 67___
___CCGTCT___GG______AC___CGAG___CT
19._IMC 67___
___CCGTCT____________AC___CGAG___CT
20._IMC 67___
___CCGTCT____________AC___CGAG___CT
21._IMC 67___
___CCGTCT____________AC___CGAG___CT
22._IMC 67___
___CCGTCT____________AC___CGAG___CT
23._IMC 67___
___CCACAGAAGG______AC___CGAGGGAG
24._IMC 67___
___ACCCAAAAGG______CC___GGGGGGAG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 67___
______AAAA___GG___CTGG___GGATCCAA
2._IMC 67___
______AAAA___GGAACTGG___GGATCCAA
3._IMC 67___
______AAAA___GG___CTGG___GGATCCAA
4._IMC 67___
______AAAA___GGAACTGG___GGATCCAA
5._IMC 67___
______AAAA___GGAACTGG___GGATCCAA
6._IMC 67___
______TTAA___GGAAAGGG___GGATGG___
7._IMC 67___
______TTAA___GGAAAGGG___GGATGG___
8._IMC 67___
______________________________GG______AA
9._IMC 67___
__________________AA_________GG______AA
10._IMC 67___
______________________________GG______AA
11._IMC 67___
__________________AA_________GG______AA
12._IMC 67___
__________________AA_________GG______AA
13._IMC 67___
_______________GGATCT____________CC___
14._IMC 67___
__________________AA_________GG______AA
15._IMC 67___
__________________AA_________GG______AA
16._IMC 67___
TTAC___AAAC____________CC____________
17._IMC 67___
______TTAA___GGAAAGGG___GGATGG___
18._IMC 67___
_________AA___GGAA_______________CCAA
19._IMC 67___
__________________AA_________GG______AA
20._IMC 67___
__________________AA_________GG______AA
21._IMC 67___
__________________AA_________GG______AA
22._IMC 67___
__________________AA_________GG______AA
23._IMC 67___
______TTAA___GGAAAGGG___GGATGG___
24._IMC 67___
______AAAG___GGAAGGGG___GGATCC___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 67___
CC___AA___ACCC___AGGTGGGG___ACCC
2._IMC 67___
CC___AA___ACCC___AGGTGGGG___ACCC
3._IMC 67___
CC___AA___ACCC___AGGTGGGG___ACCC
4._IMC 67___
CC___AA___ACCC___AGGTGGGG___ACCC
5._IMC 67___
______AA___ACCC___AGGTGGGG___ACCC
6._IMC 67___
GG___AA___AC______AGACGGCG___ACGG
7._IMC 67___
GG___AA___AC______AGACGGCG___ACGG
8._IMC 67___
____________ACCC______GT___GG___AC___
9._IMC 67___
____________ACCC______GT___GG___AC___
10._IMC 67___
____________ACCC______GT___GG___AC___
11._IMC 67___
____________ACCC______GT___GG___AC___
12._IMC 67___
____________ACCC______GT___GG___AC___
13._IMC 67___
______________________________GG___ACCC
14._IMC 67___
____________ACCC______GT___GG___AC___
15._IMC 67___
____________ACCC______GT___GG___AC___
16._IMC 67___
___AA___CCAC___AG_________GGATACCC
17._IMC 67___
GG___AA___AC______AGACGGCG___ACGG
18._IMC 67___
____________ACCC______GT___CG___ACCC
19._IMC 67___
____________ACCC______GT___GG___AC___
20._IMC 67___
____________ACCC______GT___GG___AC___
21._IMC 67___
____________ACCC______GT___GG___AC___
22._IMC 67___
____________ACCC______GT___GG___AC___
23._IMC 67___
GG___AA___AC______AGACGGCG___ACGG
24._IMC 67___
AG___AC___CC______AGCCGGGG___ACGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 67___
GGCC_________AAAA___AATTCCGGGG___
2._IMC 67___
GGCC_________AAAA___AATTCCGGGG___
3._IMC 67___
GGCC_________AAAA___AATTCCGGGG___
4._IMC 67___
GGCC____________AA___AATTCCGGGG___
5._IMC 67___
GGCC_________AAAA___AATTCCGGGG___
6._IMC 67___
___GG____________AA___AA______CCGG___
7._IMC 67___
___GG____________AA___AA______CCGG___
8._IMC 67___
___CC_________AA_______________GG______
9._IMC 67___
___CC_________AA_______________GG______
10._IMC 67___
___CC_________AA_______________GG______
11._IMC 67___
___CC___________________________GG______
12._IMC 67___
___CC_________AA_______________GG______
13._IMC 67___
AA_______________________________________
14._IMC 67___
___CC_________AA_______________GG______
15._IMC 67___
___CC_________AA_______________GG______
16._IMC 67___
______TTAGCCAA___CG______TTGGGGCC
17._IMC 67___
___GG____________AA___AA______CCGG___
18._IMC 67___
___CC________________________TTGGGG___
19._IMC 67___
___CC_________AA_______________GG______
20._IMC 67___
___CC_________AA_______________GG______
21._IMC 67___
___CC_________AA_______________GG______
22._IMC 67___
___CC_________AA_______________GG______
23._IMC 67___
___GG____________AA___AA______CCGG___
24._IMC 67___
___AA____________AA___AG______CCAA___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 67___
TTGTTT___CC___CG___CCCCCTCCGGCC
2._IMC 67___
TTGTTT___CC___CG___CCCCCTCCGGCC
3._IMC 67___
TTGTTT___CC___CG___CCCCCTCC___CC
4._IMC 67___
TTGTTT___CC___CG___CCCCCTCCGGCC
5._IMC 67___
TTGTTT___CC___CG___CCCCCTCCGGCC
6._IMC 67___
AAACAA___CC___CGGGGG___AGGGGGGG
7._IMC 67___
AAACAA___CC___CGGGGG___AGGGGGGG
8._IMC 67___
________________________CC___CT______CC
9._IMC 67___
________________________CC___CT______CC
10._IMC 67___
________________________CC___CT______CC
11._IMC 67___
________________________CC___CT______CC
12._IMC 67___
________________________CC___CT______CC
13._IMC 67___
GT__________________GGCGGGCC_________
14._IMC 67___
________________________CC___CT______CC
15._IMC 67___
________________________CC___CT______CC
16._IMC 67___
_________TTCCAATT___CC_________GG___
17._IMC 67___
AAACAA___CC___CGGGGG___AGGGGGGG
18._IMC 67___
______TT___CC_________CCCCTT_________
19._IMC 67___
________________________CC___CT______CC
20._IMC 67___
________________________CC___CT______CC
21._IMC 67___
________________________CC___CT______CC
22._IMC 67___
________________________CC___CT______CC
23._IMC 67___
AAACAA___CC___CGGGGG___AGGGGGGG
24._IMC 67___
AAACAA___CC___GGAGGG___AGGGGGAA
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._IMC 67___
GGCC___AATTAACC______TTCG___CCGG
2._IMC 67___
GGCC___AATTAACC______TT______CCGG
3._IMC 67___
GGCC___AATTAACC______TTCG___CCGG
4._IMC 67___
GGCC___AATTAACC______TTCG___CCGG
5._IMC 67___
GGCC___AATTAACC______TTCG___CCGG
6._IMC 67___
GGGG___AAAAAA_________AA______GGGG
7._IMC 67___
GGGG___AAAAAA_________AA______GGGG
8._IMC 67___
GG______AATTAA__________________CCGG
9._IMC 67___
GG______AATTAA__________________CCGG
10._IMC 67___
GG______AATTAA__________________CCGG
11._IMC 67___
GG______AATTAA__________________CCGG
12._IMC 67___
GG______AATTAA__________________CCGG
13._IMC 67___
____________CC_______________CG___CC___
14._IMC 67___
GG______AATTAA__________________CCGG
15._IMC 67___
GG______AATTAA__________________CCGG
16._IMC 67___
______CG______AACCCCAA______CC___GG
17._IMC 67___
GGGG___AAAAAA_________AA______GGGG
18._IMC 67___
_______________AACC_______________CC___
19._IMC 67___
GG______AATTAG__________________CCGG
20._IMC 67___
GG______AATTAA__________________CCGG
21._IMC 67___
GG______AATTAA__________________CCGG
22._IMC 67___
GG______AATTAG__________________CCGG
23._IMC 67___
GGGG___AAAAAA_________AA______GGGG
24._IMC 67___
CGAG___ATAGAA_________AA______GGGG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._IMC 67___
GGAACCGG___TTCCTTCTCCGG______CC
2._IMC 67___
GGAA___GG___TTCCTTCTCCGG______CC
3._IMC 67___
GGAACCGG___TTCCTTCTCCGG______CC
4._IMC 67___
GGAACCGG___TTCCTTCTCCGG______CC
5._IMC 67___
GGAACCGG___TTCCTTCTCCGG______CC
6._IMC 67___
CCAAGGGG_________AAAG___CC_________
7._IMC 67___
CCAAGGGG_________AAAG___CC_________
8._IMC 67___
___AA____________CC______CC____________
9._IMC 67___
___AA____________CC______CC____________
10._IMC 67___
___AA____________CC______CC____________
11._IMC 67___
___AA____________CC______CC____________
12._IMC 67___
___AA____________CC______CC____________
13._IMC 67___
_________GG___TT________________________
14._IMC 67___
___AA____________CC______CC____________
15._IMC 67___
___AA____________CC______CC____________
16._IMC 67___
____________CT___CC____________GTAA___
17._IMC 67___
CCAAGGGG_________AAAG___CC_________
18._IMC 67___
GG______GG___TT________________________
19._IMC 67___
___AA____________CC______CC____________
20._IMC 67___
___AA____________CC______CC____________
21._IMC 67___
___AA____________CC______CC____________
22._IMC 67___
___AA____________CC______CC____________
23._IMC 67___
CCAAGGGG_________AAAG___CC_________
24._IMC 67___
CCAAGGGG_________AGAG___AA_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._IMC 67___
GTTT______TTCCGG______CTCCTTGGAG
2._IMC 67___
GTTT______TTCCGG______CTCCTTGGAG
3._IMC 67___
GTTT______TTCCGG______CTCCTTGGAG
4._IMC 67___
GTTT______TTCCGG______CTCCTTGGAG
5._IMC 67___
GTTT______TTCCGG______CTCCTTGGAG
6._IMC 67___
ACAA______AACCGG______AGGGAACCAG
7._IMC 67___
ACAA______AACCGG______AGGGAACCAG
8._IMC 67___
GTTT_________CC_________CT___TTGGAG
9._IMC 67___
GTTT_________CC_________CT___TTGGAG
10._IMC 67___
GTTT_________CC_________CT___TTGGAG
11._IMC 67___
GTTT_________CC_________CT___TTGGAG
12._IMC 67___
GTTT_________CC_________CT___TTGGAG
13._IMC 67___
______________________________CC___CG___
14._IMC 67___
GTTT_________CC_________CT___TTGGAG
15._IMC 67___
GTTT_________CC_________CT___TTGGAG
16._IMC 67___
GT___GGAT_________AAGG_________GG___
17._IMC 67___
ACAA______AACCGG______AGGGAACCAG
18._IMC 67___
GT_________TT_______________CCTTGGAG
19._IMC 67___
GTTT_________CC_________CT___TTGGAG
20._IMC 67___
GTTT_________CC_________CT___TTGGAG
21._IMC 67___
GTTT_________CC_________CT___TTGGAG
22._IMC 67___
GTTT_________CC_________CT___TTGGAG
23._IMC 67___
ACAA______AACCGG______AGGGAACCAG
24._IMC 67___
AAAA______GGCCGG______AGGGAGGGAA
 127 128 129 130 131 132 133 134       
1._IMC 67___
CC______ACAGAAAAACX_XX_XX_XX_XX_XX_X
2._IMC 67___
CC______ACAGAAAAACX_XX_XX_XX_XX_XX_X
3._IMC 67___
CC______ACAGAAAAACX_XX_XX_XX_XX_XX_X
4._IMC 67___
CC______ACAGAA___ACX_XX_XX_XX_XX_XX_X
5._IMC 67___
CC______ACAGAAAAACX_XX_XX_XX_XX_XX_X
6._IMC 67___
GG______AC___AAAAACX_XX_XX_XX_XX_XX_X
7._IMC 67___
GG______AC___AAAAACX_XX_XX_XX_XX_XX_X
8._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
9._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
10._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
11._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
12._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
13._IMC 67___
________________________X_XX_XX_XX_XX_XX_X
14._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
15._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
16._IMC 67___
___TTAA_______________X_XX_XX_XX_XX_XX_X
17._IMC 67___
GG______AC___AAAAACX_XX_XX_XX_XX_XX_X
18._IMC 67___
________________________X_XX_XX_XX_XX_XX_X
19._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
20._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
21._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
22._IMC 67___
CC_____________________X_XX_XX_XX_XX_XX_X
23._IMC 67___
GG______AC___AAAAACX_XX_XX_XX_XX_XX_X
24._IMC 67___
GG______AA___CCGGCCX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

2._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

3._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

4._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

5._IMC_67 GC-05-082-2-33

Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

7._IMC_67 GC-05-82-2-33

Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

8._IMC_67

Location: 5233 1 > FP
 Dapeng Zhang, 2016

9._IMC_67

Location: 5233 2 > FP
 Dapeng Zhang, 2016

10._IMC_67

Location: 5233 3 > FP
 Dapeng Zhang, 2016

11._IMC_67

Location: 5233 4 > FP
 Dapeng Zhang, 2016

12._IMC_67

Location: 5233 5 > FP
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

13._IMC_67

 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

14._IMC_67

Location: Cabiria
 Dapeng Zhang, 2016

Estation Experimental Tropical Pichilingue Ecuador

15._IMC_67

 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

16._IMC_67 RUQ 1056

 Lambert Motilal, 2023
Population Assignment: 

17._IMC_67 RUQ 1056

Notes: Reading_Collection
 Mars, 2018

18._IMC_67 RUQ 1056

 Dapeng Zhang, 2014

19._IMC_67 RUQ 1056

 Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

20._IMC_67

Location: P55
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

21._IMC_67

Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

22._IMC_67

Location: Marper D 647
 Dapeng Zhang, 2016

USDA-TARS United States of America

23._IMC_67 IMC 67_Fld#_152A_Plt#_1

Location: Field: 152A, Tree: 1
 Mars, 2018

24._IMC_67 IMC 67_Fld#_152B_Plt#_4

Location: Field: 152B, Tree: 4
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133