SNP Profiles of "AMAZ 15 /15" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	GT	CC	AT	GG	AC
2. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	GT	CT	AT	GG	CC
3. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	GT	CT	AT	GG	CC
4. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	GT	CC	AT	GG	AC
5. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	TT	CT	TT	GG	AC
6. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	TT	CT	TT	GG	AC
7. _GC-01-028-2-05	CG	GG	TT	GG	CC	TT	CC	TT	AC	GT	CC	AT	GG	AC
8. _1205_9	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
9. _1205_16	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
10. _1205_1_>_FP	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
11. _1205_4	CG	___	TT	___	___	___	___	___	AC	GT	CT	___	___	CC
12. _1205_6_>_FP	CG	___	TT	___	___	___	___	___	AC	GT	CT	___	___	CC
13. _1205_10	CG	___	TT	___	___	___	___	___	AC	TT	CT	___	___	AC
14. _1205_11_>_F	CG	___	TT	___	___	___	___	___	AC	TT	CT	___	___	AC
15. _AMAZ15/15	___	___	___	___	___	___	___	___	CC	___	CC	___	GG	AC
16. _RUQ_1	___	___	___	___	___	TT	CC	___	CC	GT	CC	___	GG	AC
17. _RUQ_1	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
19. _4A_A101_T1	CG	___	TT	___	___	___	___	___	AC	GT	CC	___	___	AC
20. _AMZ_15-15_Fld#_155_Plt#_6	CG	CC	TT	GG	GG	AA	CC	AA	___	AC	GG	AT	GG	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-01-028-2-05	CC	AA	GG	CT	AA	GG	GG	AA	TT	GG	GG	AT	CC	AG
2. _GC-01-028-2-05	CC	AA	GG	CC	AA	GG	GG	AA	CT	GG	GG	AT	CC	AG
3. _GC-01-028-2-05	CC	AA	GG	CC	AA	GG	GG	AA	CT	GG	GG	AT	CC	AG
4. _GC-01-028-2-05	CC	AA	GG	CT	AA	GG	GG	AA	TT	GG	GG	AT	CC	AG
5. _GC-01-028-2-05	CC	AA	GG	CT	AA	GG	GG	AA	CT	GG	GG	AT	CC	AG
6. _GC-01-028-2-05	CC	AA	GG	CT	AA	GG	GG	AA	CT	GG	GG	AT	CC	AG
7. _GC-01-028-2-05	CC	AA	GG	CT	AA	GG	GG	AA	TT	GG	GG	AT	CC	AG
8. _1205_9	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
9. _1205_16	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
10. _1205_1_>_FP	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
11. _1205_4	CC	AA	___	CC	___	___	___	AA	___	___	GG	___	___	AG
12. _1205_6_>_FP	CC	AA	___	CC	___	___	___	AA	___	___	GG	___	___	AG
13. _1205_10	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
14. _1205_11_>_F	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
15. _AMAZ15/15	GG	AA	___	___	___	___	GG	AA	TT	___	___	___	CC	___
16. _RUQ_1	CC	AA	___	CT	___	GG	GG	AA	___	___	___	___	CC	AG
17. _RUQ_1	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
19. _4A_A101_T1	CC	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AG
20. _AMZ_15-15_Fld#_155_Plt#_6	GG	AA	GG	AG	TT	GG	GG	AA	AA	GG	GG	AT	GG	___

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-01-028-2-05	___	AA	AC	CC	AA	GG	GG	GG	AA	CT	AA	CT	AA	AA
2. _GC-01-028-2-05	___	AA	AC	CC	AA	GT	GG	GG	AA	CT	AA	CT	AA	AA
3. _GC-01-028-2-05	___	AA	AC	CC	AA	GT	GG	GG	AA	CT	AA	CT	AA	AA
4. _GC-01-028-2-05	___	AA	AC	CC	AA	GG	___	GG	AA	CT	AA	CT	AA	AA
5. _GC-01-028-2-05	___	AA	AC	CC	AG	GG	GG	___	AC	TT	AA	CC	AA	AA
6. _GC-01-028-2-05	___	AA	AC	CC	AG	GG	GG	___	AC	TT	AA	CC	AA	AA
7. _GC-01-028-2-05	___	AA	AC	CC	AA	GG	GG	GG	AA	CT	AA	CT	AA	AA
8. _1205_9	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	AA	___
9. _1205_16	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	AA	___
10. _1205_1_>_FP	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	AA	___
11. _1205_4	___	___	AC	CC	___	GT	___	GG	AA	___	___	CT	AA	___
12. _1205_6_>_FP	___	___	AC	CC	___	GT	___	GG	AA	___	___	CT	AA	___
13. _1205_10	___	___	AC	CC	___	GG	___	___	AC	___	___	CC	AA	___
14. _1205_11_>_F	___	___	AC	CC	___	GG	___	___	AC	___	___	CC	AA	___
15. _AMAZ15/15	___	___	___	___	___	___	___	CG	AA	CT	AA	___	___	___
16. _RUQ_1	___	___	AC	CC	___	GG	___	CG	AA	CT	___	CT	___	___
17. _RUQ_1	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	GG	___
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	GG	___
19. _4A_A101_T1	___	___	AC	CC	___	GG	___	GG	AA	___	___	CT	GG	___
20. _AMZ_15-15_Fld#_155_Plt#_6	AA	AA	AC	___	AA	CC	GG	CG	AA	AG	___	AG	___	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-01-028-2-05	AA	TT	CT	TT	AA	TT	TT	TT	AC	CG	AA	CG	CC	TT
2. _GC-01-028-2-05	AA	TT	CC	TT	AG	TT	TT	TT	AA	CC	AA	CG	CC	TT
3. _GC-01-028-2-05	AA	TT	CC	TT	AG	TT	TT	TT	AA	CC	AA	CG	CC	TT
4. _GC-01-028-2-05	AA	TT	CT	TT	AA	TT	TT	TT	AC	CG	AA	CG	CC	TT
5. _GC-01-028-2-05	AA	TT	CT	TT	AG	TT	GT	TT	CC	GG	AA	CG	CC	TT
6. _GC-01-028-2-05	AA	TT	CT	TT	AG	TT	GT	TT	CC	GG	AA	CG	CC	TT
7. _GC-01-028-2-05	AA	TT	CT	TT	AA	TT	TT	TT	AC	CG	AA	CG	CC	TT
8. _1205_9	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
9. _1205_16	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
10. _1205_1_>_FP	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
11. _1205_4	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
12. _1205_6_>_FP	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
13. _1205_10	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
14. _1205_11_>_F	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
15. _AMAZ15/15	___	___	___	___	___	TT	___	___	___	___	AA	CG	GG	TT
16. _RUQ_1	___	___	TT	TT	AA	___	___	TT	AC	___	___	CG	CC	TT
17. _RUQ_1	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
19. _4A_A101_T1	___	___	___	TT	___	___	___	___	___	___	___	CG	___	TT
20. _AMZ_15-15_Fld#_155_Plt#_6	AA	___	___	AA	AA	AA	AA	AA	AC	CG	AA	CG	___	AA

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-01-028-2-05	CC	GG	CC	GG	CC	AA	CC	AA	CT	TT	GG	CT	GG	GG
2. _GC-01-028-2-05	CC	GG	CC	GG	CC	AT	CT	AA	CT	TT	GG	CC	GG	GG
3. _GC-01-028-2-05	CC	GG	CC	GG	CC	AT	CT	AA	CT	TT	GG	CC	GG	GG
4. _GC-01-028-2-05	CC	GG	CC	GG	CC	AA	CC	AA	CT	TT	GG	CT	GG	GG
5. _GC-01-028-2-05	CC	GG	CC	GG	CC	AA	CT	AA	CC	TT	CG	CT	GG	GG
6. _GC-01-028-2-05	CC	GG	CC	GG	CC	AA	CT	AA	CC	TT	CG	CT	GG	GG
7. _GC-01-028-2-05	CC	GG	CC	GG	CC	AA	CC	AA	___	TT	GG	CT	GG	GG
8. _1205_9	___	___	CC	GG	___	AA	CC	AA	___	___	___	CT	GG	___
9. _1205_16	___	___	CC	GG	___	AA	CC	AA	___	___	___	CT	GG	___
10. _1205_1_>_FP	___	___	CC	GG	___	AA	CC	AA	___	___	___	CT	GG	___
11. _1205_4	___	___	CC	GG	___	AT	CT	AA	___	___	___	CC	GG	___
12. _1205_6_>_FP	___	___	CC	GG	___	AT	CT	AA	___	___	___	CC	GG	___
13. _1205_10	___	___	CC	GG	___	AA	CT	AA	___	___	___	CT	GG	___
14. _1205_11_>_F	___	___	CC	GG	___	AA	CT	AA	___	___	___	CT	GG	___
15. _AMAZ15/15	___	___	___	___	___	___	CC	___	___	___	GG	CT	___	___
16. _RUQ_1	___	-	___	___	___	___	___	AA	-	___	___	CT	___	GG
17. _RUQ_1	___	___	CC	GG	___	AA	CC	AA	___	___	___	TT	GG	___
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	___	___	CC	GG	___	AA	CC	AA	___	___	___	CT	GG	___
19. _4A_A101_T1	___	___	CC	GG	___	AA	CC	AA	___	___	___	CT	GG	___
20. _AMZ_15-15_Fld#_155_Plt#_6	GG	GG	GG	GG	GG	AA	GG	AA	___	AA	___	AG	GG	CC

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	TT	CC	GG	CC	GT	TT	TT	CC
2. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	CT	CC	GG	CC	GT	TT	TT	CC
3. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	CT	CC	GG	CC	GT	TT	TT	CC
4. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	TT	CC	GG	CC	GT	TT	TT	CC
5. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	CT	CC	GG	CC	TT	TT	TT	CC
6. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	CT	CC	GG	CC	TT	TT	TT	CC
7. _GC-01-028-2-05	AA	CC	GG	TT	CC	TT	TT	CC	GG	CC	GT	TT	TT	CC
8. _1205_9	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
9. _1205_16	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
10. _1205_1_>_FP	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
11. _1205_4	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
12. _1205_6_>_FP	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
13. _1205_10	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
14. _1205_11_>_F	AA	___	___	___	CC	___	___	CC	___	___	TT	TT	___	CC
15. _AMAZ15/15	___	___	GG	TT	___	___	___	___	___	___	___	___	___	___
16. _RUQ_1	___	___	GG	TT	___	___	___	___	___	___	GT	___	CT	___
17. _RUQ_1	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
19. _4A_A101_T1	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	CC
20. _AMZ_15-15_Fld#_155_Plt#_6	AA	GG	GG	___	___	AA	AA	___	CC	___	AA	AA	AG	CC

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-01-028-2-05	GG	CT	CC	TT	GG	AA	CC	CC	GG	AC	AA	CC	X_X	X_X
2. _GC-01-028-2-05	GG	CT	CC	TT	GG	AA	CC	CC	AG	CC	AG	CC	X_X	X_X
3. _GC-01-028-2-05	GG	CT	CC	TT	GG	AA	CC	CC	AG	CC	AG	CC	X_X	X_X
4. _GC-01-028-2-05	GG	CT	CC	TT	GG	AA	CC	CC	GG	AC	AA	CC	X_X	X_X
5. _GC-01-028-2-05	GG	CT	CC	TT	GG	AG	CC	CC	AG	AA	AA	CC	X_X	X_X
6. _GC-01-028-2-05	GG	CT	CC	TT	GG	AG	CC	CC	AG	AA	AA	CC	X_X	X_X
7. _GC-01-028-2-05	GG	CT	CC	TT	GG	AA	CC	CC	GG	AC	AA	CC	X_X	X_X
8. _1205_9	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
9. _1205_16	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
10. _1205_1_>_FP	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
11. _1205_4	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
12. _1205_6_>_FP	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
13. _1205_10	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
14. _1205_11_>_F	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
15. _AMAZ15/15	___	___	CC	___	CC	___	___	___	___	___	___	___	X_X	X_X
16. _RUQ_1	___	___	CC	TT	GG	AA	___	___	___	___	___	___	X_X	X_X
17. _RUQ_1	___	CT	___	TT	GG	AG	CC	___	___	___	___	___	X_X	X_X
18. _Trial_1/Rep_1_Trial_1/Rep_1_50	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
19. _4A_A101_T1	___	CT	___	TT	GG	AA	CC	___	___	___	___	___	X_X	X_X
20. _AMZ_15-15_Fld#_155_Plt#_6	GG	AG	GG	AA	CC	AA	GG	CC	___	AC	AA	CC	X_X	X_X

Mars Center for Cocoa Science Brazil

1._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 1

Notes: 1 > FP1

2._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 4

Notes: 4

3._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 6

Notes: 6 > FP4

4._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 9

Notes: 9

5._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 10

Notes: 10

6._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 11

Notes: 11 > FP2

7._AMAZ_15_/15 GC-01-028-2-05

Location: Tree: 16

Notes: 16

8._AMAZ_15_/15

Location: 1205 9

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

9._AMAZ_15_/15

Location: 1205 16

Dapeng Zhang, 2016

10._AMAZ_15_/15

Location: 1205 1 > FP

Dapeng Zhang, 2016

11._AMAZ_15_/15

Location: 1205 4

Dapeng Zhang, 2016

12._AMAZ_15_/15

Location: 1205 6 > FP

Dapeng Zhang, 2016

13._AMAZ_15_/15

Location: 1205 10

Dapeng Zhang, 2016

14._AMAZ_15_/15

Location: 1205 11 > F

Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

15._AMAZ_15_/15

Jocelyn De Wever et al., 2019

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

16._AMAZ_15_/15 RUQ 1

Dapeng Zhang, 2014

17._AMAZ_15_/15 RUQ 1

Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

18._AMAZ_15_/15

Location: Trial 1/Rep 1 Trial 1/Rep 1 50

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

19._AMAZ_15_/15

Location: 4A A101 T1

Dapeng Zhang, 2016

USDA-TARS United States of America

20._AMAZ_15_/15 AMZ 15-15_Fld#_155_Plt#_6

Location: Field: 155, Tree: 6

Notes: TARS_Cacao_collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133