SNP Profiles of SCA 6   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._SCA 6___
______CCTTAA___AG______CCTTCCTT___
2._SCA 6___
______CCTTAA___AG______CCTTCCTT___
3._SCA 6___
______CCTTAA___AG______CCTTCCTT___
4._SCA 6___
______CCTTAA___AG______CCTTCCTT___
5._SCA 6___
______CCTTAA___AG______CCTTCCTT___
6._SCA 6___
______CCTTAA___AG______CCTTCCTT___
7._SCA 6___
______CCTTAA___AG______CCTTCCTT___
8._SCA 6___
______CCTTAA___AG______CCTTCCTT___
9._SCA 6___
______CCTTAA___AG______CCTTCCTT___
10._SCA 6___
______CCTTAA___AG______CCTTCCTT___
11._SCA 6___
______CCTTAA___AG______CCTTCCTT___
12._SCA 6___
______CCTTAA___AG______CCTTCCTT___
13._SCA 6___
______CCTTAA___AG______CCTTCCTT___
14._SCA 6___
______CCTTAA___AG______CCTTCCTT___
15._SCA 6___
______CCTTAA___AG______CCTTCCTT___
16._SCA 6___
______CCTT______AG______CCTTCCTT___
17._SCA 6___
______CCTTAA___AG______CCTTCCTT___
18._SCA 6___
______CC___AA___________________________
19._SCA 6___
______CC___AA___________________________
20._SCA 6___
______CC___AA___________________________
21._SCA 6___
______CC___AA___________________________
22._SCA 6___
______CC___AA___________________________
23._SCA 6___
______CC___AA___________________________
24._SCA 6___
______CC___AA___________________________
25._SCA 6___
______CC___AA___________________________
26._SCA 6___
______CC___AA___________________________
27._SCA 6___
______CC___AA___________________________
28._SCA 6___
______CC___AA___________________________
29._SCA 6___
______CC___AA___________________________
30._SCA 6___
______CC_________________________________
31._SCA 6___
______CC___AA___________________________
32._SCA 6___
______CC___AA___________________________
33._SCA 6___
______CC___AA___________________________
34._SCA 6___
______CC___AA___________________________
35._SCA 6___
__________________________________________
36._SCA 6___
______CC___AA___________________________
37._SCA 6___
CCAA_________TT___CCTT____________TT
38._SCA 6___
CCAA_________TT___CCTT____________TT
39._SCA 6___
______CCAAAA___AG______GGAACCAA___
40._SCA 6___
______________________________TTCC______
41._SCA 6___
______CC___AA___________________________
42._SCA 6___
______CC___AA___________________________
43._SCA 6___
______CC___AA___________________________
44._SCA 6___
______CC___AA___________________________
45._SCA 6___
______CC___AA___________________________
46._SCA 6___
______CC___AA___________________________
47._SCA 6___
______CCAAAA___AG______GGAACCAA___
48._SCA 6___
______CCAAAA___AG______GGAACCAA___
49._SCA 6___
______CCAAAA___AG______GGAACCAA___
50._SCA 6___
______CCAAAA___AG______GGAACCAA___
51._SCA 6___
______CCAAAA___AG______GGAACCAA___
52._SCA 6___
______CCAAAA___AG______GGAACCAA___
53._SCA 6___
______CCAAAA___AG______GGAACCAA___
54._SCA 6___
______CCAAAA___AG______GGAACCAA___
55._SCA 6___
______CGACAT___AG______GGAACCAG___
56._SCA 6___
______CGACAT___AG______GGAACCAG___
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._SCA 6___
___ACGGTTCCGG______CC___CCAACCCT
2._SCA 6___
___ACGGTTCCGG______CC___CCAACCCT
3._SCA 6___
___ACGGTTCCGG______CC___CCAACCCT
4._SCA 6___
___ACGGTTCCGG______CC___CCAACCCT
5._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
6._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
7._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
8._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
9._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
10._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
11._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
12._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
13._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
14._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
15._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
16._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
17._SCA 6___
___ACGGTTTTGG______CC___CCAAAGCT
18._SCA 6___
___ACGGTT____________CC___CCAA___CT
19._SCA 6___
___ACGGTT____________CC___CCAA___CT
20._SCA 6___
___ACGGTT____________CC___CCAA___CT
21._SCA 6___
___ACGGTT____________CC___CCAA___CT
22._SCA 6___
___ACGGTT____________CC___CCAA___CT
23._SCA 6___
___ACGGTT____________CC___CCAA___CT
24._SCA 6___
___ACGGTT____________CC___CCAA___CT
25._SCA 6___
___ACGGTT____________CC___CCAA___CT
26._SCA 6___
___ACGGTT____________CC___CCAA___CT
27._SCA 6___
___ACGGTT____________CC___CCAA___CT
28._SCA 6___
___ACGGTT____________CC___CCAA___CT
29._SCA 6___
___ACGGTT____________CC___CCAA___CT
30._SCA 6___
___ACGGTT____________CC___CCAA___CT
31._SCA 6___
___ACGGTT____________CC___CCAA___CT
32._SCA 6___
___ACGGTT____________CC___CCAA___CT
33._SCA 6___
___ACGGTT____________CC___CCAA___CT
34._SCA 6___
___ACGGTT____________CC___CCAA___CT
35._SCA 6___
___CC___TT___GG______CC___GGAA______
36._SCA 6___
___ACGGTT____________CC___CCAA___TT
37._SCA 6___
AAAC____________TTAA___GG___AA______
38._SCA 6___
AAAC____________TTAA___GG___AA______
39._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
40._SCA 6___
___CCGGTT___GG______CC___CCAA___CT
41._SCA 6___
___ACGGTT____________CC___CCAA___CT
42._SCA 6___
___ACGGTT____________CC___CCAA___CT
43._SCA 6___
___ACGGTT____________CC___CCAA___CT
44._SCA 6___
___ACGGTT____________CC___CCAA___TT
45._SCA 6___
___ACGGTT____________CC___CCAA___CT
46._SCA 6___
___ACGGTT____________CC___CCAA___CT
47._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
48._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
49._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
50._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
51._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
52._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
53._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
54._SCA 6___
___ACCCAAAAGG______CC___GGAAAGAG
55._SCA 6___
___AAACAGATGG______AC___GGAAAGGG
56._SCA 6___
___AAACAGATGG______AC___GGAAAGGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
2._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
3._SCA 6___
______AT______GGAACCAA___AGAAGGGG
4._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
5._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
6._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
7._SCA 6___
______ATGG___GGAACCAA___AGAAGGGG
8._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
9._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
10._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
11._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
12._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
13._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
14._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
15._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
16._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
17._SCA 6___
______ATAA___GGAACCAA___AGAAGGGG
18._SCA 6___
__________________AA_________AG______GG
19._SCA 6___
__________________AA_________AG______GG
20._SCA 6___
__________________AA_________AG______GG
21._SCA 6___
__________________AA_________AG______GG
22._SCA 6___
__________________AA_________AG______GG
23._SCA 6___
__________________AA_________AG______GG
24._SCA 6___
__________________AA_________AG______GG
25._SCA 6___
__________________AA_________AG______GG
26._SCA 6___
__________________AA_________AG______GG
27._SCA 6___
__________________AA_________AG______GG
28._SCA 6___
__________________AA_________AG______GG
29._SCA 6___
__________________AA_________AG______GG
30._SCA 6___
__________________AA_________AG______GG
31._SCA 6___
__________________AA_________AG______GG
32._SCA 6___
__________________AA_________AG______GG
33._SCA 6___
__________________AA_________AG______GG
34._SCA 6___
__________________AA_________AG______GG
35._SCA 6___
_______________GGAACC____________GG___
36._SCA 6___
__________________AA_________AG______GG
37._SCA 6___
TTAA___AAAA____________CT____________
38._SCA 6___
TTAA___AAAA____________CT____________
39._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
40._SCA 6___
_________AA___GGAA_______________GGGG
41._SCA 6___
__________________AA_________AG______GG
42._SCA 6___
__________________AA_________AG______GG
43._SCA 6___
__________________AA_________AG______GG
44._SCA 6___
__________________AA_________AG______GG
45._SCA 6___
__________________AA_________AG______GG
46._SCA 6___
__________________AA_________AG______GG
47._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
48._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
49._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
50._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
51._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
52._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
53._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
54._SCA 6___
______ATAA___GGAAGGAA___AGAACC___
55._SCA 6___
______ATAG___GGAAAGAG___AGATCG___
56._SCA 6___
______ATAG___GGAAAGAG___AGATCG___
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._SCA 6___
CC___AA___AACC___AAGGGGCG___CCCC
2._SCA 6___
CC___AA___AACC___AAGGGGCG___CCCC
3._SCA 6___
CC___AA___AACC___AAGGGGCG___CCCC
4._SCA 6___
CC___AA___AACC___AAGGGGCG___CCCC
5._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
6._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
7._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
8._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
9._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
10._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
11._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
12._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
13._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
14._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
15._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
16._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
17._SCA 6___
______AA___AACC___AAGGGGCG___CCCC
18._SCA 6___
____________AACC______GG___CG___CC___
19._SCA 6___
____________AACC______GG___CG___CC___
20._SCA 6___
____________AACC______GG___CG___CC___
21._SCA 6___
____________AACC______GG___CG___CC___
22._SCA 6___
____________AACC______GG___CG___CC___
23._SCA 6___
____________AACC______GG___CG___CC___
24._SCA 6___
____________AACC______GG___CG___CC___
25._SCA 6___
____________AACC______GG___CG___CC___
26._SCA 6___
____________AACC______GG___CG___CC___
27._SCA 6___
____________AACC______GG___CG___CC___
28._SCA 6___
____________AACC______GG___CG___CC___
29._SCA 6___
____________AACC______GG___CG___CC___
30._SCA 6___
____________AACC______GG___CG___CC___
31._SCA 6___
____________AACC______GG___CG___CC___
32._SCA 6___
____________AACC______GG___CG___CC___
33._SCA 6___
____________AACC______GG___CG___CC___
34._SCA 6___
____________AACC______GG___CG___CC___
35._SCA 6___
______________________________CG___CCCC
36._SCA 6___
____________AACC______GG___CG___CC___
37._SCA 6___
___AA___CCAA___AG_________CGAACCCC
38._SCA 6___
___AA___CCAA___AG_________CGAACCCC
39._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
40._SCA 6___
____________AACC______GG___CG___CCCC
41._SCA 6___
____________AACC______GG___CG___CC___
42._SCA 6___
____________AACC______GG___CG___CC___
43._SCA 6___
____________AACC______GG___CG___CC___
44._SCA 6___
____________AACC______GG___CG___CC___
45._SCA 6___
____________AACC______GG___CG___CC___
46._SCA 6___
____________AACC______GG___CG___CC___
47._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
48._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
49._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
50._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
51._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
52._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
53._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
54._SCA 6___
GG___AA___AA______AACCGGCG___CCGG
55._SCA 6___
AG___AC___AC______AGACAGCG___ACAG
56._SCA 6___
AG___AC___AC______AGACAGCG___ACAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
2._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
3._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
4._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
5._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
6._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
7._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
8._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
9._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
10._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
11._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
12._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
13._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
14._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
15._SCA 6___
AGTT_________AAAA___AA___TTGGAA___
16._SCA 6___
AGTT_________AAAA___AACTTTGGAA___
17._SCA 6___
AGTT_________AAAA___AACT___GGAA___
18._SCA 6___
___TT_________AA_______________GG______
19._SCA 6___
___TT_________AA_______________GG______
20._SCA 6___
___TT_________AA_______________GG______
21._SCA 6___
___TT_________AA_______________GG______
22._SCA 6___
___TT_________AA_______________GG______
23._SCA 6___
___TT_________AA_______________GG______
24._SCA 6___
___TT_________AA_______________GG______
25._SCA 6___
___TT_________AA_______________GG______
26._SCA 6___
___TT_________AA_______________GG______
27._SCA 6___
___TT_________AA_______________GG______
28._SCA 6___
___TT_________AA_______________GG______
29._SCA 6___
___TT_________AA_______________GG______
30._SCA 6___
___TT_________AA_______________GG______
31._SCA 6___
___TT_________AA_______________GG______
32._SCA 6___
___TT_________AA_______________GG______
33._SCA 6___
___TT_________AA_______________GG______
34._SCA 6___
___TT_________AA_______________GG______
35._SCA 6___
AG_______________________________________
36._SCA 6___
___TT_________AG_______________GG______
37._SCA 6___
______TTGGCCAG___CC______CTGGAACC
38._SCA 6___
______TTGGCCAG___CC______CTGGAACC
39._SCA 6___
___AA____________AA___AA______CCAA___
40._SCA 6___
___TT________________________CTGGAA___
41._SCA 6___
___TT_________AG_______________GG______
42._SCA 6___
___TT_________AG_______________GG______
43._SCA 6___
___TT_________AG_______________GG______
44._SCA 6___
___TT_________AG_______________GG______
45._SCA 6___
___TT_________AG_______________GG______
46._SCA 6___
___TT_________AG_______________GG______
47._SCA 6___
___AA____________AA___AA______CCAA___
48._SCA 6___
___AA____________AA___AA______CCAA___
49._SCA 6___
___AA____________AA___AA______CCAA___
50._SCA 6___
___AA____________AA___AA______CCAA___
51._SCA 6___
___AA____________AA___AA______CCAA___
52._SCA 6___
___AA____________AA___AA______CCAA___
53._SCA 6___
___AA____________AA___AA______CCAA___
54._SCA 6___
___AA____________AA___AA______CCAA___
55._SCA 6___
___AA____________AG___AA______CCAG___
56._SCA 6___
___AA____________AG___AA______CCAG___
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
2._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
3._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
4._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
5._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
6._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
7._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
8._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
9._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
10._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
11._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
12._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
13._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
14._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
15._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
16._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
17._SCA 6___
TTGGTT___CC___CCAACCCGTTCGGGCC
18._SCA 6___
________________________CC___TT______CC
19._SCA 6___
________________________CC___TT______CC
20._SCA 6___
________________________CC___TT______CC
21._SCA 6___
________________________CC___TT______CC
22._SCA 6___
________________________CC___TT______CC
23._SCA 6___
________________________CC___TT______CC
24._SCA 6___
________________________CC___TT______CC
25._SCA 6___
________________________CC___TT______CC
26._SCA 6___
________________________CC___TT______CC
27._SCA 6___
________________________CC___TT______CC
28._SCA 6___
________________________CC___TT______CC
29._SCA 6___
________________________CC___TT______CC
30._SCA 6___
________________________CC___TT______CC
31._SCA 6___
________________________CC___TT______CC
32._SCA 6___
________________________CC___TT______CC
33._SCA 6___
________________________CC___TT______CC
34._SCA 6___
________________________CC___TT______CC
35._SCA 6___
TT__________________AAGGCGTT_________
36._SCA 6___
________________________CC___TT______CC
37._SCA 6___
_________TTCCTTCC___CC_________GG___
38._SCA 6___
_________TTCCTTCC___CC_________GG___
39._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
40._SCA 6___
______TT___CC_________CCCGTT_________
41._SCA 6___
________________________CC___TT______CC
42._SCA 6___
________________________CC___TT______CC
43._SCA 6___
________________________CC___TT______CC
44._SCA 6___
________________________CC___TT______CT
45._SCA 6___
________________________CC___TT______CC
46._SCA 6___
________________________CC___TT______CC
47._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
48._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
49._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
50._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
51._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
52._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
53._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
54._SCA 6___
AACCAA___CC___GGAAGG___AACGGGGG
55._SCA 6___
AAACAA___AC___CGAGCG___AGGGAGAG
56._SCA 6___
AAACAA___AC___CGAGCG___AGGGAGAG
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
2._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
3._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
4._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
5._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
6._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
7._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
8._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
9._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
10._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
11._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
12._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
13._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
14._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
15._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
16._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
17._SCA 6___
CCCC___TTCCAACC______TTCG___CTGG
18._SCA 6___
CC______TTCCAA__________________CTGG
19._SCA 6___
CC______TTCCAA__________________CTGG
20._SCA 6___
CC______TTCCAA__________________CTGG
21._SCA 6___
CC______TTCCAA__________________CTGG
22._SCA 6___
CC______TTCCAA__________________CTGG
23._SCA 6___
CC______TTCCAA__________________CTGG
24._SCA 6___
CC______TTCCAA__________________CTGG
25._SCA 6___
CC______TTCCAA__________________CTGG
26._SCA 6___
CC______TTCCAA__________________CTGG
27._SCA 6___
CC______TTCCAA__________________CTGG
28._SCA 6___
CC______TTCCAA__________________CTGG
29._SCA 6___
CC______TTCCAA__________________CTGG
30._SCA 6___
CC______TTCCAA__________________CTGG
31._SCA 6___
CC______TTCCAA__________________CTGG
32._SCA 6___
CC______TTCCAA__________________CTGG
33._SCA 6___
CC______TTCCAA__________________CTGG
34._SCA 6___
CC______TTCCAA__________________CTGG
35._SCA 6___
____________CC_______________CG___CT___
36._SCA 6___
CC______TTCCAA__________________CTGG
37._SCA 6___
______GG______AACCTTAA______CC___GG
38._SCA 6___
______GG______AACCTTAA______CC___GG
39._SCA 6___
CCGG___TTGGAA_________AA______AGGG
40._SCA 6___
_______________AACC_______________CT___
41._SCA 6___
CC______TTCCAA__________________CTGG
42._SCA 6___
CC______TTCCAA__________________CTGG
43._SCA 6___
CC______TTCCAA__________________CTGG
44._SCA 6___
CC______TTCCAA__________________CCGG
45._SCA 6___
CC______TTCCAA__________________CTGG
46._SCA 6___
CC______TTCCAA__________________CTGG
47._SCA 6___
CCGG___TTGGAA_________AA______AGGG
48._SCA 6___
CCGG___TTGGAA_________AA______AGGG
49._SCA 6___
CCGG___TTGGAA_________AA______AGGG
50._SCA 6___
CCGG___TTGGAA_________AA______AGGG
51._SCA 6___
CCGG___TTGGAA_________AA______AGGG
52._SCA 6___
CCGG___TTGGAA_________AA______AGGG
53._SCA 6___
CCGG___TTGGAA_________AA______AGGG
54._SCA 6___
CCGG___TTGGAA_________AA______AGGG
55._SCA 6___
CCGG___ATAGAG_________AA______GGAG
56._SCA 6___
CCGG___ATAGAG_________AA______GGAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
2._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
3._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
4._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
5._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
6._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
7._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
8._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
9._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
10._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
11._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
12._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
13._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
14._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
15._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
16._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
17._SCA 6___
GGATTTGG___TTCCCTCCTTTT______AA
18._SCA 6___
___AT____________CC______TT____________
19._SCA 6___
___AT____________CC______TT____________
20._SCA 6___
___AT____________CC______TT____________
21._SCA 6___
___AT____________CC______TT____________
22._SCA 6___
___AT____________CC______TT____________
23._SCA 6___
___AT____________CC______TT____________
24._SCA 6___
___AT____________CC______TT____________
25._SCA 6___
___AT____________CC______TT____________
26._SCA 6___
___AT____________CC______TT____________
27._SCA 6___
___AT____________CC______TT____________
28._SCA 6___
___AT____________CC______TT____________
29._SCA 6___
___AT____________CC______TT____________
30._SCA 6___
___AT____________CC______TT____________
31._SCA 6___
___AT____________CC______TT____________
32._SCA 6___
___AT____________CC______TT____________
33._SCA 6___
___AT____________CC______TT____________
34._SCA 6___
___AT____________CC______TT____________
35._SCA 6___
_________GG___TT________________________
36._SCA 6___
___AT____________CC______TT____________
37._SCA 6___
____________CT___CC____________GGAA___
38._SCA 6___
____________CT___CC____________GGAA___
39._SCA 6___
CCATAAGG_________AGGG___AA_________
40._SCA 6___
GG______GG___TT________________________
41._SCA 6___
___AT____________CC______TT____________
42._SCA 6___
___AT____________CC______TT____________
43._SCA 6___
___AT____________CC______TT____________
44._SCA 6___
___AT____________CC______TT____________
45._SCA 6___
___AT____________CC______TT____________
46._SCA 6___
___AT____________CC______TT____________
47._SCA 6___
CCATAAGG_________AGGG___AA_________
48._SCA 6___
CCATAAGG_________AGGG___AA_________
49._SCA 6___
CCATAAGG_________AGGG___AA_________
50._SCA 6___
CCATAAGG_________AGGG___AA_________
51._SCA 6___
CCATAAGG_________AGGG___AA_________
52._SCA 6___
CCATAAGG_________AGGG___AA_________
53._SCA 6___
CCATAAGG_________AGGG___AA_________
54._SCA 6___
CCATAAGG_________AGGG___AA_________
55._SCA 6___
CCATAGAG_________AAGG___AC_________
56._SCA 6___
CCATAGAG_________AAGG___AC_________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._SCA 6___
GGCT_________CCAA_________CCCTCCAG
2._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
3._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
4._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
5._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
6._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
7._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
8._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
9._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
10._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
11._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
12._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
13._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
14._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
15._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
16._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
17._SCA 6___
GGCT_________CCAA______CCCCCTCCAG
18._SCA 6___
GGCT_________CC_________CC___CTCCAG
19._SCA 6___
GGCT_________CC_________CC___CTCCAG
20._SCA 6___
GGCT_________CC_________CC___CTCCAG
21._SCA 6___
GGCT_________CC_________CC___CTCCAG
22._SCA 6___
GGCT_________CC_________CC___CTCCAG
23._SCA 6___
GGCT_________CC_________CC___CTCCAG
24._SCA 6___
GGCT_________CC_________CC___CTCCAG
25._SCA 6___
GGCT_________CC_________CC___CTCCAG
26._SCA 6___
GGCT_________CC_________CC___CTCCAG
27._SCA 6___
GGCT_________CC_________CC___CTCCAG
28._SCA 6___
GGCT_________CC_________CC___CTCCAG
29._SCA 6___
GGCT_________CC_________CC___CTCCAG
30._SCA 6___
GGCT_________CC_________CC___CTCCAG
31._SCA 6___
GGCT_________CC_______________CTCCAG
32._SCA 6___
GGCT_________CC_________CC___CTCCAG
33._SCA 6___
GGCT_________CC_________CC___CTCCAG
34._SCA 6___
GGCT_________CC_________CC___CTCCAG
35._SCA 6___
______________________________CC___GG___
36._SCA 6___
GGCT_________CC_________CC___CTCCAG
37._SCA 6___
GG___GG____________AAAA_________CC___
38._SCA 6___
GG___GGAT_________AAAA_________CC___
39._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
40._SCA 6___
GG_________CC_______________CCCTCCAG
41._SCA 6___
GGCT_________CC_________CC___CTCCAG
42._SCA 6___
GGCT_________CC_________CC___CTCCAG
43._SCA 6___
GGCT_________CC_________CC___CTCCAG
44._SCA 6___
GGTT_________CC_________CC___TTCCAG
45._SCA 6___
GGCT_________CC_________CC___CTCCAG
46._SCA 6___
GGCT_________CC_________CC___CTCCAG
47._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
48._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
49._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
50._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
51._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
52._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
53._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
54._SCA 6___
CCAG______GGCCAA______GGGGAGGGAG
55._SCA 6___
ACGG______AGACAG______AGAGGGCGAG
56._SCA 6___
ACGG______AGACAG______AGAGGGCGAG
 127 128 129 130 131 132 133 134       
1._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
2._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
3._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
4._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
5._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
6._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
7._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
8._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
9._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
10._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
11._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
12._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
13._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
14._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
15._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
16._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
17._SCA 6___
CC______CCAACCGGCCX_XX_XX_XX_XX_XX_X
18._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
19._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
20._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
21._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
22._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
23._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
24._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
25._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
26._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
27._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
28._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
29._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
30._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
31._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
32._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
33._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
34._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
35._SCA 6___
________________________X_XX_XX_XX_XX_XX_X
36._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
37._SCA 6___
___CTAA_______________X_XX_XX_XX_XX_XX_X
38._SCA 6___
___CTAA_______________X_XX_XX_XX_XX_XX_X
39._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
40._SCA 6___
________________________X_XX_XX_XX_XX_XX_X
41._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
42._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
43._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
44._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
45._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
46._SCA 6___
CC_____________________X_XX_XX_XX_XX_XX_X
47._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
48._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
49._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
50._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
51._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
52._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
53._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
54._SCA 6___
GG______CC___CCGGCCX_XX_XX_XX_XX_XX_X
55._SCA 6___
AG______CC___ACAGACX_XX_XX_XX_XX_XX_X
56._SCA 6___
AG______CC___ACAGACX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._SCA_6 GC-01-26-2-03

Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

2._SCA_6 GC-01-26-2-03

Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

3._SCA_6 GC-01-26-2-03

Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

4._SCA_6 GC-01-26-2-03

Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

5._SCA_6 GC-01-026-2-03

Location: Tree: 1
Notes: Dead
 Mars, 2018

6._SCA_6 GC-01-026-2-03

Location: Tree: 2
Notes: 2
 Mars, 2018

7._SCA_6 GC-01-026-2-03

Location: Tree: 3
Notes: 3
 Mars, 2018

8._SCA_6 GC-01-026-2-03

Location: Tree: 4
Notes: 4
 Mars, 2018

9._SCA_6 GC-01-026-2-03

Location: Tree: 5
Notes: 5
 Mars, 2018

10._SCA_6 GC-01-026-2-03

Location: Tree: 6
Notes: 6
 Mars, 2018

11._SCA_6 GC-01-026-2-03

Location: Tree: 8
Notes: 8
 Mars, 2018

12._SCA_6 GC-01-026-2-03

Location: Tree: 9
Notes: 9
 Mars, 2018

13._SCA_6 GC-01-026-2-03

Location: Tree: 10
Notes: 10
 Mars, 2018

14._SCA_6 GC-01-026-2-03

Location: Tree: 13
Notes: 13
 Mars, 2018

15._SCA_6 GC-01-026-2-03

Location: Tree: 14
Notes: 14
 Mars, 2018

16._SCA_6 GC-01-026-2-03

Location: Tree: 15
Notes: 15
 Mars, 2018

17._SCA_6 GC-01-026-2-03

Location: Tree: 2
Notes: 2
 Mars, 2018

18._SCA_6

Location: 1203 1
 Dapeng Zhang, 2016

19._SCA_6

Location: 1203 2
 Dapeng Zhang, 2016

20._SCA_6

Location: 1203 2
 Dapeng Zhang, 2016

21._SCA_6

Location: 1203 3
 Dapeng Zhang, 2016

22._SCA_6

Location: 1203 4
 Dapeng Zhang, 2016

23._SCA_6

Location: 1203 5
 Dapeng Zhang, 2016

24._SCA_6

Location: 1203 6
 Dapeng Zhang, 2016

25._SCA_6

Location: 1203 8
 Dapeng Zhang, 2016

26._SCA_6

Location: 1203 9
 Dapeng Zhang, 2016

27._SCA_6

Location: 1203 10
 Dapeng Zhang, 2016

28._SCA_6

Location: 1203 13
 Dapeng Zhang, 2016

29._SCA_6

Location: 1203 14
 Dapeng Zhang, 2016

30._SCA_6

Location: 1203 15
 Dapeng Zhang, 2016

31._SCA_6

Location: 1203 1 > FP
 Dapeng Zhang, 2016

32._SCA_6

Location: 1203 11 > F
 Dapeng Zhang, 2016

33._SCA_6

Location: 1203 16 > F
 Dapeng Zhang, 2016

34._SCA_6

Location: 1203 7 > FP
 Dapeng Zhang, 2016

Center for Forestry Research and Technology Transfer Vietnam

35._SCA_6

 Jocelyn De Wever et al., 2019

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

36._SCA_6

Location: Cabiria
 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

37._SCA_6 RUQ 234

 Lambert Motilal, 2023
Population Assignment: 

38._SCA_6 RUQ 234B

 Lambert Motilal, 2023

39._SCA_6 RUQ 234

Notes: Reading_Collection
 Mars, 2018

40._SCA_6 RUQ 234

 Dapeng Zhang, 2014

41._SCA_6 RUQ 234

 Dapeng Zhang, 2016

Cocoa Research Institute of Ghana (CRIG) Ghana

42._SCA_6

Location: P75 279
 Dapeng Zhang, 2016

43._SCA_6

Location: P76 278
 Dapeng Zhang, 2016

Indonesian Coffee and Cocoa Research Institute (ICCRI) Indonesia

44._SCA_6

Location: KW 268 I-022
 Dapeng Zhang, 2016

Malaysian Cocoa Board (MCB) Malaysia

45._SCA_6

Location: C0267
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

46._SCA_6

Location: Marper D 644
 Dapeng Zhang, 2016

USDA-SHRS United States of America

47._SCA_6 MITC-000343

 Mars, 2018

48._SCA_6 MITC-000344

 Mars, 2018

49._SCA_6 MITC-000345

 Mars, 2018

50._SCA_6 MITC-000347

 Mars, 2018

51._SCA_6 MITC-000348

 Mars, 2018

52._SCA_6 MITC-000349

 Mars, 2018

53._SCA_6 MITC-000376

 Mars, 2018

54._SCA_6 MITC-000452

 Mars, 2018

USDA-TARS United States of America

55._SCA_6 SCA 6 TC (Penn State)_Fld#_197_Plt#_6

Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

56._SCA_6 SCA 6_Fld#_16_Plt#_1

Location: Field: 16, Tree: 1
 Mars, 2018

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1242 113TcSNP1253 114TcSNP1270 115TcSNP1275
116TcSNP1293 117TcSNP1309 118TcSNP1350 119TcSNP1383 120TcSNP1401
121TcSNP1404 122TcSNP1414 123TcSNP1439 124TcSNP1442 125TcSNP1458
126TcSNP1484 127TcSNP1520 128TcSNP1524 129TcSNP1527 130Tcm001s00947643
131Tcm002s20575712 132Tcm003s01336581 133Tcm003s07402719 134Tcm006s26664133