SNP Profiles of "SPA 9 [COL]" View Data

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
1. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
2. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
3. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
4. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	___	AT	GG	AC
5. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
6. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
7. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	___	AT	GG	AC
8. _GC-01-099-5-16	CG	GT	AT	GG	CC	CT	CC	CT	AC	GT	CT	AT	GG	AC
9. _1516_2	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
10. _1516_3	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
11. _1516_4	CG	___	AT	___	___	___	___	___	AC	GT	___	___	___	AC
12. _1516_5	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
13. _1516_1_>_FP	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
14. _1516_14_>_F	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
15. _1516_6_>_FP	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
16. _1516_9_>_FP	CG	___	AT	___	___	___	___	___	AC	GT	___	___	___	AC
17. _RUQ_235	CG	AC	AT	GG	GG	AG	CC	AG	___	AC	AG	AT	GG	AC
18. _RUQ_235	___	___	___	___	___	-	-	___	CC	-	TT	___	GG	-
19. _RUQ_235	CG	___	AT	___	___	___	___	___	AC	GT	CT	___	___	AC
20. _CAMPUS_2_X1_Y17	GG	___	TT	___	___	___	___	___	AC	GG	CT	___	___	AC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
1. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
2. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
3. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	___	AA	GG	AT	CG	AG
4. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
5. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
6. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
7. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
8. _GC-01-099-5-16	CC	AG	GG	CT	AA	AG	AG	AA	CC	AA	GG	AT	CG	AG
9. _1516_2	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
10. _1516_3	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
11. _1516_4	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
12. _1516_5	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
13. _1516_1_>_FP	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
14. _1516_14_>_F	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
15. _1516_6_>_FP	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
16. _1516_9_>_FP	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
17. _RUQ_235	GG	AG	GG	AG	TT	AG	AG	AA	GG	AA	GG	AT	CG	___
18. _RUQ_235	CC	-	___	CT	___	-	-	-	___	___	___	___	CC	AG
19. _RUQ_235	CC	AG	___	CT	___	___	___	AA	___	___	GG	___	___	AG
20. _CAMPUS_2_X1_Y17	CG	AA	___	CT	___	___	___	AA	___	___	GG	___	___	AA

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
1. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
2. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
3. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
4. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
5. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
6. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
7. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
8. _GC-01-099-5-16	___	AC	AC	CT	AG	GT	AG	CG	CC	CT	GG	TT	AA	AG
9. _1516_2	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
10. _1516_3	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
11. _1516_4	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
12. _1516_5	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
13. _1516_1_>_FP	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
14. _1516_14_>_F	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
15. _1516_6_>_FP	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
16. _1516_9_>_FP	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
17. _RUQ_235	AG	AC	AC	___	AG	AC	AG	CG	CC	AG	___	AA	___	AA
18. _RUQ_235	___	___	AC	-	___	GT	___	CG	-	CT	___	TT	___	___
19. _RUQ_235	___	___	AC	CT	___	GT	___	CG	CC	___	___	TT	AA	___
20. _CAMPUS_2_X1_Y17	___	___	CC	TT	___	GG	___	GG	AA	___	___	CC	AA	___

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
1. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
2. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
3. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
4. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
5. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
6. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
7. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
8. _GC-01-099-5-16	AG	TT	CT	GG	AG	TT	GG	TT	CC	CG	AA	CG	CG	CT
9. _1516_2	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
10. _1516_3	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
11. _1516_4	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
12. _1516_5	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
13. _1516_1_>_FP	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
14. _1516_14_>_F	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
15. _1516_6_>_FP	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
16. _1516_9_>_FP	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
17. _RUQ_235	AG	___	___	CC	AG	AA	CC	AA	CC	CG	AA	CG	___	AG
18. _RUQ_235	___	___	-	GG	AG	___	___	-	CC	___	___	CG	CG	-
19. _RUQ_235	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CT
20. _CAMPUS_2_X1_Y17	___	___	___	GG	___	___	___	___	___	___	___	CG	___	CC

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
1. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
2. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
3. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
4. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
5. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
6. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
7. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
8. _GC-01-099-5-16	CC	AG	CT	CG	CT	AT	CT	AA	CC	TT	CC	CT	AG	GT
9. _1516_2	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
10. _1516_3	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
11. _1516_4	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
12. _1516_5	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
13. _1516_1_>_FP	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
14. _1516_14_>_F	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
15. _1516_6_>_FP	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
16. _1516_9_>_FP	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
17. _RUQ_235	GG	AG	AG	CG	AG	AT	AG	AA	___	AA	___	AG	AG	AC
18. _RUQ_235	___	-	___	___	___	___	___	AA	CC	___	___	-	___	GT
19. _RUQ_235	___	___	CT	CG	___	AT	CT	AA	___	___	___	CT	AG	___
20. _CAMPUS_2_X1_Y17	___	___	CC	GG	___	AA	TT	AG	___	___	___	CC	GG	___

	71	72	73	74	75	76	77	78	79	80	81	82	83	84
1. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
2. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
3. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
4. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
5. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
6. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
7. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
8. _GC-01-099-5-16	AA	CT	AG	AT	CT	CT	CT	CT	GT	AC	GT	CT	TT	AC
9. _1516_2	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
10. _1516_3	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
11. _1516_4	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
12. _1516_5	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
13. _1516_1_>_FP	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
14. _1516_14_>_F	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
15. _1516_6_>_FP	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
16. _1516_9_>_FP	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
17. _RUQ_235	AA	AG	AG	___	___	AG	AG	___	AC	___	AC	AG	AG	AC
18. _RUQ_235	___	___	AG	AT	___	___	___	___	___	___	GT	___	CT	___
19. _RUQ_235	AA	___	___	___	CT	___	___	CT	___	___	GT	CT	___	AC
20. _CAMPUS_2_X1_Y17	AA	___	___	___	CC	___	___	CC	___	___	GT	TT	___	AC

	85	86	87	88	89	90	91	92	93	94	95	96
1. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
2. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
3. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
4. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
5. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
6. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
7. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
8. _GC-01-099-5-16	AG	CT	CT	TT	CC	AA	CT	CC	AG	AC	GG	AC	X_X	X_X
9. _1516_2	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
10. _1516_3	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
11. _1516_4	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
12. _1516_5	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
13. _1516_1_>_FP	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
14. _1516_14_>_F	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
15. _1516_6_>_FP	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
16. _1516_9_>_FP	___	CT	___	TT	CC	AA	CT	___	___	___	___	___	X_X	X_X
17. _RUQ_235	AG	AG	AG	AA	GG	AA	AG	CC	___	AC	GG	AC	X_X	X_X
18. _RUQ_235	___	___	CT	TT	CC	AA	___	___	___	___	___	___	X_X	X_X
19. _RUQ_235	___	CT	___	TT	CC	AG	CT	___	___	___	___	___	X_X	X_X
20. _CAMPUS_2_X1_Y17	___	TT	___	TT	CG	AA	CC	___	___	___	___	___	X_X	X_X

Mars Center for Cocoa Science Brazil

1._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 1

Notes: 1 > FP1

2._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 2

Notes: 2

3._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 3

Notes: 3

4._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 4

Notes: 4

5._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 5

Notes: 5

6._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 6

Notes: 6 > FP4

7._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 9

Notes: 9 > FP2

8._SPA_9_[COL] GC-01-099-5-16

Location: Tree: 14

Notes: 14 > FP3

9._SPA_9_[COL]

Location: 1516 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

10._SPA_9_[COL]

Location: 1516 3

Dapeng Zhang, 2016

11._SPA_9_[COL]

Location: 1516 4

Dapeng Zhang, 2016

12._SPA_9_[COL]

Location: 1516 5

Dapeng Zhang, 2016

13._SPA_9_[COL]

Location: 1516 1 > FP

Dapeng Zhang, 2016

14._SPA_9_[COL]

Location: 1516 14 > F

Dapeng Zhang, 2016

15._SPA_9_[COL]

Location: 1516 6 > FP

Dapeng Zhang, 2016

16._SPA_9_[COL]

Location: 1516 9 > FP

Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

17._SPA_9_[COL] RUQ 235

Notes: Reading_Collection

18._SPA_9_[COL] RUQ 235

Dapeng Zhang, 2014

19._SPA_9_[COL] RUQ 235

Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

20._SPA_9_[COL]

Location: CAMPUS 2 X1 Y17

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP25	2	TcSNP28	3	TcSNP32	4	TcSNP42	5	TcSNP60
6	TcSNP75	7	TcSNP90	8	TcSNP122	9	TcSNP144	10	TcSNP150
11	TcSNP151	12	TcSNP154	13	TcSNP174	14	TcSNP193	15	TcSNP226
16	TcSNP230	17	TcSNP240	18	TcSNP242	19	TcSNP316	20	TcSNP329
21	TcSNP364	22	TcSNP372	23	TcSNP413	24	TcSNP418	25	TcSNP429
26	TcSNP430	27	TcSNP448	28	TcSNP469	29	TcSNP497	30	TcSNP521
31	TcSNP529	32	TcSNP534	33	TcSNP547	34	TcSNP560	35	TcSNP561
36	TcSNP577	37	TcSNP591	38	TcSNP602	39	TcSNP606	40	TcSNP619
41	TcSNP645	42	TcSNP653	43	TcSNP689	44	TcSNP701	45	TcSNP702
46	TcSNP723	47	TcSNP731	48	TcSNP751	49	TcSNP776	50	TcSNP799
51	TcSNP823	52	TcSNP836	53	TcSNP860	54	TcSNP872	55	TcSNP878
56	TcSNP891	57	TcSNP894	58	TcSNP899	59	TcSNP917	60	TcSNP929
61	TcSNP944	62	TcSNP953	63	TcSNP994	64	TcSNP998	65	TcSNP999
66	TcSNP1034	67	TcSNP1041	68	TcSNP1060	69	TcSNP1062	70	TcSNP1063
71	TcSNP1075	72	TcSNP1096	73	TcSNP1111	74	TcSNP1126	75	TcSNP1144
76	TcSNP1149	77	TcSNP1156	78	TcSNP1165	79	TcSNP1175	80	TcSNP1242
81	TcSNP1253	82	TcSNP1270	83	TcSNP1309	84	TcSNP1350	85	TcSNP1383
86	TcSNP1414	87	TcSNP1439	88	TcSNP1442	89	TcSNP1458	90	TcSNP1484
91	TcSNP1520	92	Tcm001s00947643	93	Tcm002s20575712	94	Tcm003s01336581	95	Tcm003s07402719
96	Tcm006s26664133