SNP Profiles of IMC 47   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
GGAGGGCTAGCCCCAACGAAACCTCTCG
1._IMC_47___
______CTAG____AA____________
2._IMC_47___
____________CCAA____AC__TT__
3._IMC_47___
______CTAG__CCAG____AC__CT__
4._IMC_47___
______CTAG__CCAG____AC__CT__
5._IMC_47___
______CTAG__CCAG____AC__CT__
6._IMC_47___
______CTAG__CCAG____AC__CT__
7._IMC_47___
______CTAG__CCAG____AC__CT__
8._IMC_47___
______CTAG__CCAG____AC__CT__
9._IMC_47___
______CTAG__CCAG____AC__CT__
10._IMC_47___
______CTAG__CCAG____AC__CT__
11._IMC_47___
______CTAG__CCAG____AC__CT__
12._IMC_47___
______CTAG____AG____________
13._IMC_47___
______CTAG____AG____________
14._IMC_47___
______CTAG____AG____________
15._IMC_47___
______CTAG____AG____________
16._IMC_47___
______CTAG____AG____________
17._IMC_47___
______CTAG____AG____________
18._IMC_47___
______CTAG____AG____________
19._IMC_47___
______CTAG____AG____________
20._IMC_47___
______CTAG____AG____________
21._IMC_47___
AGAAGGCCGGCCCCAACGATACTTTTCG
22._IMC_47___
______CCGG____AA____________
23._IMC_47___
______CCGG____AA____________
24._IMC_47___
________AG____AG____AC______
25._IMC_47___
________GG____AA____AC______
26._IMC_47___
______CCGG____AG____________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AGAGTTCCATACCCACAGTTAGAGCTAT
1._IMC_47___
AG__________________AG______
2._IMC_47___
______CC________GG__AG______
3._IMC_47___
AA____CC________AA__AG______
4._IMC_47___
AA____CC________AA__AG______
5._IMC_47___
AA____CC________AA__AG______
6._IMC_47___
AA____CC________AA__AG______
7._IMC_47___
AA____CC________AA__AG______
8._IMC_47___
AA____CC________AA__AG______
9._IMC_47___
AA____CC________AA__AG______
10._IMC_47___
AA____CC________AA__AG______
11._IMC_47___
AA____CC________AA__AG______
12._IMC_47___
AA__________________AG______
13._IMC_47___
AA__________________AG______
14._IMC_47___
AA__________________AG______
15._IMC_47___
AA__________________AG______
16._IMC_47___
AA__________________AG______
17._IMC_47___
AA__________________AG______
18._IMC_47___
AA__________________AG______
19._IMC_47___
AA__________________AG______
20._IMC_47___
AA__________________AG______
21._IMC_47___
AAAGTTCCAAAACCCCGGTTAGGGCCAT
22._IMC_47___
AA__________________AG______
23._IMC_47___
AA__________________AG______
24._IMC_47___
______GG________AA__AG______
25._IMC_47___
______GG________GG__AG______
26._IMC_47___
AA__________________AG______
 29 30 31 32           
_Input profile
GTGGCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._IMC_47___
GTGGCCCTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._IMC_47___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: ICS_46 RUQ_938B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._IMC_47

identical
5 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

2._IMC_47 RUQ_849

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

4._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

5._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

6._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

7._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

8._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

10._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

11._IMC_47 GC-08-103-3-02

85 %
10 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

13._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016

14._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

15._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

16._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

17._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

18._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

19._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

20._IMC_47

80 %
5 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

21._IMC_47 RUQ_849B

76.6 %
32 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

22._IMC_47

70 %
5 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

23._IMC_47

70 %
5 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

66.7 %
6 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

66.7 %
6 shared markers

USDA-SHRS, United States of America
 Mars, 2018

26._IMC_47 RUQ_849

60 %
5 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1404 2TcSNP1401 3TcSNP1275 4TcSNP1144 5TcSNP1062
6TcSNP1053 7TcSNP999 8TcSNP998 9TcSNP945 10TcSNP835
11TcSNP823 12TcSNP739 13TcSNP702 14TcSNP660 15TcSNP645
16TcSNP642 17TcSNP640 18TcSNP602 19TcSNP589 20TcSNP519
21TcSNP421 22TcSNP363 23TcSNP329 24TcSNP290 25TcSNP230
26TcSNP189 27TcSNP176 28TcSNP143 29TcSNP131 30TcSNP52
31TcSNP49 32TcSNP13