SNP Profiles of LF 1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATTTCGGGGGTTGGTTAAGTCCGGCTAA
1._LF_1___
AACTCCGGGGTTGGGGACGGCCAACCAT
2._LF_1___
____CC________GG____CCAA____
3._LF_1___
____CC________GG____CCAA____
4._LF_1___
____CC________GG____CCAA____
5._LF_1___
____CC________GG____CCAA____
6._LF_1___
____CC______________________
7._LF_1___
____CC________GG____CCAA____
8._LF_1___
____CC________GG____CCAA____
9._LF_1___
____CC________GG____CCAA____
10._LF_1___
____CC________GG____CCAA____
11._LF_1___
____CC________GG____CCAA____
12._LF_1___
______________________AA____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTCCAACGAGCGTTAAAATTCCGGGTCT
1._LF_1___
TTCCAGCGAGCCTTAAACCTCTAATTCC
2._LF_1___
__CCAG__AGCCGG__AC____AATTCT
3._LF_1___
__CCAG__AGCCGG__AC____AATTCT
4._LF_1___
__CCAG__AGCCGG__AC____AATTCT
5._LF_1___
__CCAG__AGCCGG__AC____AATTCT
6._LF_1___
__CCAG____CC____AC____AATTCC
7._LF_1___
____AG____CC____________TT__
8._LF_1___
____AG____CC____________TT__
9._LF_1___
____AG____CC____________TT__
10._LF_1___
____AG____CC____________TT__
11._LF_1___
____AG____CC____________TT__
12._LF_1___
____AG__AGGGCC__AC____AAAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCAACCGGCCCCACAACGAGAACCAACT
1._LF_1___
CGAGCGAGTTCCCCAACCAAACCTACCC
2._LF_1___
__________CCCC__CC__CC______
3._LF_1___
__________CCCC__CC__CC______
4._LF_1___
__________CCCC__CC__CC______
5._LF_1___
__________CCCC__CC__CC______
6._LF_1___
____________CC______CC______
7._LF_1___
__AG________CC__CC__CC______
8._LF_1___
____________CC__CC__CC______
9._LF_1___
____________CC__CC__CC______
10._LF_1___
____________CC__CC__CC______
11._LF_1___
____________CC__CC__CC______
12._LF_1___
__________GGCC__CC__CC______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACGGAACTAAGGAGCCACAAGTGGCCTT
1._LF_1___
ACAAACTTGGGGAACTAAATGGGGCCCT
2._LF_1___
__AA____GG______AA__________
3._LF_1___
__AA____GG______AA__________
4._LF_1___
__AA____GG______AA__________
5._LF_1___
__AA____GG______AA__________
6._LF_1___
__AA____GG______AA__________
7._LF_1___
________GG______AA__________
8._LF_1___
________GG______AA__________
9._LF_1___
________GG______AA__________
10._LF_1___
________GG______AA__________
11._LF_1___
________GG______AA__________
12._LF_1___
__AA____GG______AA__________
 57 58             
_Input profile
ACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._LF_1___
ACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._LF_1___
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_67_[PER] RUQ_590

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._LF_1 RUQ_17

60.3 %
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._LF_1 GC-08-285-8-57

45 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

3._LF_1 GC-08-285-8-57

45 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._LF_1 GC-08-285-8-57

45 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

5._LF_1 GC-08-285-8-57

45 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

6._LF_1 RUQ_17

38.5 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

7._LF_1

38.5 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0298
 Dapeng Zhang, 2016

8._LF_1

37.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 8
 Dapeng Zhang, 2016

9._LF_1

37.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 7
 Dapeng Zhang, 2016

10._LF_1

37.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 4
 Dapeng Zhang, 2016

11._LF_1

37.5 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 2
 Dapeng Zhang, 2016

12._LF_1 RUQ_17

26.7 %
15 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1062 13TcSNP1053 14TcSNP1019 15TcSNP1010
16TcSNP999 17TcSNP998 18TcSNP945 19TcSNP899 20TcSNP872
21TcSNP836 22TcSNP835 23TcSNP823 24TcSNP800 25TcSNP739
26TcSNP731 27TcSNP723 28TcSNP702 29TcSNP660 30TcSNP645
31TcSNP644 32TcSNP642 33TcSNP640 34TcSNP602 35TcSNP591
36TcSNP589 37TcSNP577 38TcSNP546 39TcSNP529 40TcSNP522
41TcSNP519 42TcSNP421 43TcSNP363 44TcSNP329 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13