SNP Profiles of IMC_47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AC	AC	AG	AC	AA	GG	GG	CC	AT	AG	GG	AA	AG	AC
1._IMC_47___	__	__	__	__	__	__	GG	__	__	__	__	__	__	__
2._IMC_47___	CC	AC	GG	AC	AA	AG	AG	CC	AA	AG	AG	AA	AG	AC
3._IMC_47___	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
4._IMC_47___	__	__	__	__	__	CC	GG	__	AT	__	__	__	__	__
5._IMC_47___	__	__	__	__	__	CC	__	GG	__	__	GG	__	__	__
6._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
7._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
8._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
9._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
10._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
11._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
12._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
13._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
14._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
15._IMC_47___	CC	AC	GG	AC	TT	CT	AG	GG	AA	CT	AG	TT	CT	GT
16._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
17._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
18._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
19._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
20._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
21._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
22._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
23._IMC_47___	__	__	__	__	__	CT	AG	__	AA	__	__	__	__	__
24._IMC_47___	__	__	__	__	__	CC	AG	__	AA	__	__	__	__	__
25._IMC_47___	__	__	__	__	__	CT	GG	__	AA	__	__	__	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AA	AA	AA	AG	CC	GG	AG	GG	CC	AA	CG	AG	AA	AG
1._IMC_47___	__	GT	__	__	__	__	__	__	CC	__	CG	__	__	__
2._IMC_47___	AG	AC	GG	GG	AC	AG	AG	AG	AA	AA	CG	AA	CC	AG
3._IMC_47___	__	GT	TT	__	CC	__	CT	__	CC	TT	CG	AG	GT	CT
4._IMC_47___	__	GT	TT	__	CC	__	CT	__	CC	TT	CG	AG	TT	CT
5._IMC_47___	__	GT	__	CT	__	__	__	CC	CC	TT	CG	AG	TT	CT
6._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
7._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
8._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
9._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
10._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
11._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
12._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
13._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
14._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
15._IMC_47___	CT	GT	CC	__	AC	AG	CT	CT	AA	TT	CG	AA	GG	CT
16._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
17._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
18._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
19._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
20._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
21._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
22._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
23._IMC_47___	__	GT	CC	__	AC	__	CT	__	AA	TT	CG	AA	GG	CT
24._IMC_47___	__	GT	CT	__	AC	__	TT	__	CC	TT	CG	AA	GT	CT
25._IMC_47___	__	GT	TT	__	CC	__	CT	__	CC	TT	GG	AG	GT	CT

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GG	AT	GG	AC	CG	AG	GG	AG	CG	CC	AT	AT	GG	GG
1._IMC_47___	__	__	__	__	__	AG	__	__	__	__	__	__	GG	__
2._IMC_47___	AG	AT	GG	AC	CG	AG	GG	AG	CG	AC	AT	AT	AA	AG
3._IMC_47___	CC	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
4._IMC_47___	CC	__	__	AC	CC	AG	__	CT	CG	__	__	AT	__	__
5._IMC_47___	__	__	GG	AC	CG	AG	__	CT	__	__	__	__	GG	GG
6._IMC_47___	__	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
7._IMC_47___	__	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
8._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
9._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
10._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
11._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
12._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
13._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
14._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
15._IMC_47___	CT	AT	GG	AC	CG	AG	GG	CT	CG	GT	AT	AT	AA	AG
16._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
17._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
18._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
19._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
20._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
21._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
22._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
23._IMC_47___	CT	__	__	AC	CG	AG	__	CT	CG	__	__	AT	__	__
24._IMC_47___	CT	__	__	AC	__	AG	__	CT	GG	__	__	AA	__	__
25._IMC_47___	CC	__	__	AC	__	AG	__	TT	GG	__	__	TT	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AT	AG	AG	AG	AG	AT	GG	GG	AA	AC	AG	CC	GG	CG
1._IMC_47___	__	__	__	__	__	__	__	__	__	AC	__	__	__	GG
2._IMC_47___	AT	AG	AG	GG	AG	AA	CC	AG	AC	AC	AG	AC	AG	CG
3._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GG	__	GG
4._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GG	__	GG
5._IMC_47___	AT	__	__	__	__	__	CC	__	__	AC	__	GG	__	CG
6._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
7._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
8._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
9._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
10._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
11._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
12._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
13._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
14._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
15._IMC_47___	AT	CT	AG	GG	AG	AA	GG	__	AC	AC	AG	GT	AG	CG
16._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
17._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
18._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
19._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
20._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
21._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
22._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
23._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CG
24._IMC_47___	AT	__	__	__	AG	__	__	__	__	AC	__	GT	__	CC
25._IMC_47___	AA	__	__	__	GG	__	__	__	__	CC	__	GT	__	GG

	57	58	59	60	61	62	63	64	65	66	67	68	69	70
_Input profile	AC	GG	GG	GG	AA	AA	CC	AG	AA	AA	AC	AA	AC	CC
1._IMC_47___	AC	__	CC	__	__	__	GG	AG	__	__	__	__	AC	CT
2._IMC_47___	AC	AG	GG	AA	AA	AA	AC	AG	AG	AC	CC	AA	AC	CG
3._IMC_47___	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
4._IMC_47___	AC	__	__	CC	__	__	GG	__	__	__	__	__	__	__
5._IMC_47___	AC	__	CC	CC	__	__	GG	AG	TT	__	__	TT	AC	__
6._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
7._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
8._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
9._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
10._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
11._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
12._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
13._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
14._IMC_47___	AC	CT	CC	TT	AA	AA	GT	AG	CT	GT	GG	TT	AC	CG
15._IMC_47___	AC	CT	CC	TT	AA	__	GT	AG	CT	GT	GG	TT	AC	CG
16._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
17._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
18._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
19._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
20._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
21._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
22._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
23._IMC_47___	AC	__	__	TT	__	__	GT	__	__	__	__	__	__	__
24._IMC_47___	AC	__	__	TT	__	__	GG	__	__	__	__	__	__	__
25._IMC_47___	AA	__	__	CC	__	__	GG	__	__	__	__	__	__	__

	71	72	73	74	75	76	77	78	79	80	81	82
_Input profile	AG	GG	AA	GG	GG	CC	GG	GG	GG	AA	AA	AA	X_X	X_X
1._IMC_47___	__	CC	__	__	GG	__	__	__	__	__	__	AA	X_X	X_X
2._IMC_47___	AA	GG	AG	GG	AG	AC	AG	CG	AG	AT	AG	AG	X_X	X_X
3._IMC_47___	__	CC	CT	__	__	__	CC	GG	__	AA	TT	AG	X_X	X_X
4._IMC_47___	__	CC	TT	__	__	__	CC	GG	__	AA	TT	AA	X_X	X_X
5._IMC_47___	__	CC	TT	__	__	CC	__	__	__	__	__	AA	X_X	X_X
6._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
7._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
8._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
9._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
10._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
11._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
12._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
13._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
14._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
15._IMC_47___	AA	CC	CT	CC	AG	AC	CT	CG	CT	AT	CT	AG	X_X	X_X
16._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
17._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
18._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
19._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
20._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
21._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
22._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
23._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AG	X_X	X_X
24._IMC_47___	__	CC	CT	__	__	__	CT	CG	__	AT	CT	AA	X_X	X_X
25._IMC_47___	__	CC	CT	__	__	__	CC	GG	__	AT	TT	AA	X_X	X_X

Input profile: IMC_47 MITC-000413

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USDA-SHRS, United States of America

1._IMC_47 RUQ_849B

70.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

2._IMC_47 GC-08-103-3-2

69.5 %
82 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: Brazil_Selections_Poss_grandparent/ CW

3._IMC_47 RUQ_849

51.4 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._IMC_47

51.4 %
35 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

5._IMC_47 RUQ_849

50 %
36 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

6._IMC_47 GC-08-103-3-02

43 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

7._IMC_47

42.6 %
34 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 7

Dapeng Zhang, 2016

8._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

9._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

10._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

11._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

12._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

13._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

14._IMC_47 GC-08-103-3-02

42.5 %
80 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

15._IMC_47 GC-08-103-3-02

41.8 %
79 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

16._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 12

Dapeng Zhang, 2016

17._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 4

Dapeng Zhang, 2016

18._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 10

Dapeng Zhang, 2016

19._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 11

Dapeng Zhang, 2016

20._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 1 > FP

Dapeng Zhang, 2016

21._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 3 > FP

Dapeng Zhang, 2016

22._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 5 > FP

Dapeng Zhang, 2016

23._IMC_47

41.4 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 6 > FP

Dapeng Zhang, 2016

24._IMC_47

39.7 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T1

Dapeng Zhang, 2016

25._IMC_47

38.2 %
34 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	Tcm001s00947643	2	Tcm003s01336581	3	Tcm003s07402719	4	Tcm006s26664133	5	TcSNP1034
6	TcSNP1060	7	TcSNP1062	8	TcSNP1063	9	TcSNP1075	10	TcSNP1096
11	TcSNP1111	12	TcSNP1149	13	TcSNP1156	14	TcSNP1175	15	TcSNP122
16	TcSNP1253	17	TcSNP1270	18	TcSNP1309	19	TcSNP1350	20	TcSNP1383
21	TcSNP1414	22	TcSNP1439	23	TcSNP144	24	TcSNP1442	25	TcSNP1458
26	TcSNP1484	27	TcSNP150	28	TcSNP151	29	TcSNP1520	30	TcSNP154
31	TcSNP174	32	TcSNP193	33	TcSNP226	34	TcSNP230	35	TcSNP240
36	TcSNP242	37	TcSNP25	38	TcSNP28	39	TcSNP316	40	TcSNP32
41	TcSNP329	42	TcSNP364	43	TcSNP372	44	TcSNP413	45	TcSNP418
46	TcSNP42	47	TcSNP429	48	TcSNP430	49	TcSNP448	50	TcSNP497
51	TcSNP521	52	TcSNP529	53	TcSNP547	54	TcSNP560	55	TcSNP561
56	TcSNP577	57	TcSNP591	58	TcSNP60	59	TcSNP602	60	TcSNP619
61	TcSNP653	62	TcSNP689	63	TcSNP723	64	TcSNP731	65	TcSNP75
66	TcSNP751	67	TcSNP776	68	TcSNP799	69	TcSNP823	70	TcSNP836
71	TcSNP860	72	TcSNP872	73	TcSNP891	74	TcSNP894	75	TcSNP899
76	TcSNP90	77	TcSNP917	78	TcSNP929	79	TcSNP944	80	TcSNP953
81	TcSNP994	82	TcSNP998