SNP Profiles of LF 1 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	AC	AA	GT	CT	AG	CC	GG	GG	TT	AA	AG	TT	GG
1._LF_1___	__	__	AA	GT	CT	__	CC	GG	GG	TT	__	__	TT	__
2._LF_1___	__	__	AA	GT	CT	__	CC	GG	GG	TT	__	__	TT	__
3._LF_1___	__	__	AA	GT	CT	__	CC	GG	GG	TT	__	__	TT	__
4._LF_1___	__	__	AA	GT	CT	__	CC	GG	GG	TT	__	__	TT	__
5._LF_1___	__	__	AA	GT	CT	__	CC	GG	GG	TT	__	__	TT	__
6._LF_1___	CT	AC	AA	GT	CT	AG	CC	GG	GG	TT	AA	AG	TT	GG
7._LF_1___	CT	AC	AA	GT	CT	AG	CC	GG	GG	TT	AA	AG	TT	GG
8._LF_1___	CT	AC	AA	GT	CT	AG	CC	GG	GG	TT	AA	AG	TT	GG
9._LF_1___	CT	AC	AA	GT	CT	AG	CC	GG	GG	TT	AA	AG	TT	GG
10._LF_1___	__	__	AA	__	__	__	__	__	GG	__	AA	__	__	__
11._LF_1___	AG	AC	AA	AC	AG	AG	CC	CC	GG	AA	AA	AG	TT	CC

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	GG	CC	CC	GG	CC	CT	CC	TT	AA	GT	AC	CC	CG	AG
1._LF_1___	GG	CC	CC	GG	CC	CT	__	TT	__	__	__	CC	__	AG
2._LF_1___	GG	CC	CC	GG	CC	CT	__	TT	__	__	__	CC	__	AG
3._LF_1___	GG	CC	CC	GG	CC	CT	__	TT	__	__	__	CC	__	AG
4._LF_1___	GG	CC	CC	GG	CC	CT	__	TT	__	__	__	CC	__	AG
5._LF_1___	GG	CC	CC	GG	CC	CT	__	TT	__	__	__	CC	__	AG
6._LF_1___	GG	CC	CC	GG	CC	CT	CT	TT	AA	GT	AC	CC	CG	AG
7._LF_1___	GG	CC	CC	GG	CC	CT	CT	TT	AA	GT	AC	CC	CG	AG
8._LF_1___	GG	CC	CC	GG	CC	CT	CT	TT	AA	GT	AC	CC	CG	AG
9._LF_1___	GG	CC	CC	GG	CC	CT	CT	TT	AA	GT	AC	CC	CG	AG
10._LF_1___	__	AC	__	__	CC	__	CC	TT	AA	__	AC	CC	__	AG
11._LF_1___	__	CC	__	CC	CC	AG	__	AA	AA	AC	AC	GG	__	AG

	29	30	31	32	33	34	35	36	37	38
_Input profile	CC	CT	TT	AG	AA	CT	CC	TT	CC	GG	X_X	X_X	X_X	X_X
1._LF_1___	__	CT	__	__	__	__	__	TT	CC	GG	X_X	X_X	X_X	X_X
2._LF_1___	__	CT	__	__	__	__	__	TT	CC	GG	X_X	X_X	X_X	X_X
3._LF_1___	__	CT	__	__	__	__	__	TT	CC	GG	X_X	X_X	X_X	X_X
4._LF_1___	__	CT	__	__	__	__	__	TT	CC	GG	X_X	X_X	X_X	X_X
5._LF_1___	__	CT	__	__	__	__	__	TT	CC	GG	X_X	X_X	X_X	X_X
6._LF_1___	CC	CT	TT	AG	AA	TT	CC	TT	CC	GG	X_X	X_X	X_X	X_X
7._LF_1___	CC	CT	TT	AG	AA	TT	CC	TT	CC	GG	X_X	X_X	X_X	X_X
8._LF_1___	CC	CT	TT	AG	AA	TT	CC	TT	CC	GG	X_X	X_X	X_X	X_X
9._LF_1___	CC	CT	TT	AG	AA	TT	CC	TT	CC	GG	X_X	X_X	X_X	X_X
10._LF_1___	CC	__	__	__	__	__	__	__	CC	__	X_X	X_X	X_X	X_X
11._LF_1___	__	AG	AA	AG	__	AG	GG	AA	__	GG	X_X	X_X	X_X	X_X

Input profile: LF_1 RUQ_17

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

1._LF_1

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 8

Dapeng Zhang, 2016

2._LF_1

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 7

Dapeng Zhang, 2016

3._LF_1

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 4

Dapeng Zhang, 2016

4._LF_1

identical
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8857 2

Dapeng Zhang, 2016

5._LF_1

identical
21 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0298

Dapeng Zhang, 2016

6._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

7._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

8._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

10._LF_1 RUQ_17

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.254 Cri
0.739

11._LF_1 RUQ_17

48.4 %
31 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP75	2	TcSNP90	3	TcSNP144	4	TcSNP150	5	TcSNP151
6	TcSNP174	7	TcSNP193	8	TcSNP226	9	TcSNP230	10	TcSNP242
11	TcSNP329	12	TcSNP364	13	TcSNP372	14	TcSNP448	15	TcSNP469
16	TcSNP529	17	TcSNP534	18	TcSNP560	19	TcSNP591	20	TcSNP619
21	TcSNP702	22	TcSNP723	23	TcSNP731	24	TcSNP799	25	TcSNP823
26	TcSNP872	27	TcSNP878	28	TcSNP998	29	TcSNP999	30	TcSNP1060
31	TcSNP1063	32	TcSNP1111	33	TcSNP1126	34	TcSNP1309	35	TcSNP1439
36	TcSNP1442	37	TcSNP1458	38	TcSNP1484