SNP Profiles of LF 1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTACAAGTCTAGCCGGGGTTAAAGTTGG
1._LF_1___
____AAGTCT__CCGGGGTT____TT__
2._LF_1___
____AAGTCT__CCGGGGTT____TT__
3._LF_1___
____AAGTCT__CCGGGGTT____TT__
4._LF_1___
____AAGTCT__CCGGGGTT____TT__
5._LF_1___
____AAGTCT__CCGGGGTT____TT__
6._LF_1___
CTACAAGTCTAGCCGGGGTTAAAGTTGG
7._LF_1___
CTACAAGTCTAGCCGGGGTTAAAGTTGG
8._LF_1___
CTACAAGTCTAGCCGGGGTTAAAGTTGG
9._LF_1___
CTACAAGTCTAGCCGGGGTTAAAGTTGG
10._LF_1___
____AA__________GG__AA______
11._LF_1___
AGACAAACAGAGCCCCGGAAAAAGTTCC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGCCCCGGCCCTCCTTAAGTACCCCGAG
1._LF_1___
GGCCCCGGCCCT__TT______CC__AG
2._LF_1___
GGCCCCGGCCCT__TT______CC__AG
3._LF_1___
GGCCCCGGCCCT__TT______CC__AG
4._LF_1___
GGCCCCGGCCCT__TT______CC__AG
5._LF_1___
GGCCCCGGCCCT__TT______CC__AG
6._LF_1___
GGCCCCGGCCCTCTTTAAGTACCCCGAG
7._LF_1___
GGCCCCGGCCCTCTTTAAGTACCCCGAG
8._LF_1___
GGCCCCGGCCCTCTTTAAGTACCCCGAG
9._LF_1___
GGCCCCGGCCCTCTTTAAGTACCCCGAG
10._LF_1___
__AC____CC__CCTTAA__ACCC__AG
11._LF_1___
__CC__CCCCAG__AAAAACACGG__AG
 29 30 31 32 33 34 35 36 37 38     
_Input profile
CCCTTTAGAACTCCTTCCGGX_XX_XX_XX_X
1._LF_1___
__CT__________TTCCGGX_XX_XX_XX_X
2._LF_1___
__CT__________TTCCGGX_XX_XX_XX_X
3._LF_1___
__CT__________TTCCGGX_XX_XX_XX_X
4._LF_1___
__CT__________TTCCGGX_XX_XX_XX_X
5._LF_1___
__CT__________TTCCGGX_XX_XX_XX_X
6._LF_1___
CCCTTTAGAATTCCTTCCGGX_XX_XX_XX_X
7._LF_1___
CCCTTTAGAATTCCTTCCGGX_XX_XX_XX_X
8._LF_1___
CCCTTTAGAATTCCTTCCGGX_XX_XX_XX_X
9._LF_1___
CCCTTTAGAATTCCTTCCGGX_XX_XX_XX_X
10._LF_1___
CC______________CC__X_XX_XX_XX_X
11._LF_1___
__AGAAAG__AGGGAA__GGX_XX_XX_XX_X

Input profile: LF_1 RUQ_17

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._LF_1

identical
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 8
 Dapeng Zhang, 2016

2._LF_1

identical
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 7
 Dapeng Zhang, 2016

3._LF_1

identical
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 4
 Dapeng Zhang, 2016

4._LF_1

identical
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 2
 Dapeng Zhang, 2016

5._LF_1

identical
21 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0298
 Dapeng Zhang, 2016

6._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

7._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

8._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._LF_1 GC-08-285-8-57

97.4 %
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

10._LF_1 RUQ_17

96.2 %
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._LF_1 RUQ_17

48.4 %
31 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP591 20TcSNP619
21TcSNP702 22TcSNP723 23TcSNP731 24TcSNP799 25TcSNP823
26TcSNP872 27TcSNP878 28TcSNP998 29TcSNP999 30TcSNP1060
31TcSNP1063 32TcSNP1111 33TcSNP1126 34TcSNP1309 35TcSNP1439
36TcSNP1442 37TcSNP1458 38TcSNP1484