SNP Profiles of IMC 47 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AA
1._IMC_47___	__	__	CG	__	__	__	__	GT	__	CC	__	GG	__	AA
2._IMC_47___	__	AG	CG	TT	__	__	__	GT	__	__	__	__	CC	AA
3._IMC_47___	CC	AG	CG	TT	CT	CC	TT	GT	CT	CC	AT	GG	CC	AG
4._IMC_47___	CC	AG	GG	TT	CT	CC	TT	GT	CC	CC	AA	GG	CT	AA
5._IMC_47___	CT	AA	CG	TT	TT	AC	CT	GT	CT	CT	AA	AG	CC	AA
6._IMC_47___	__	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
7._IMC_47___	__	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
8._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
9._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
10._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
11._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
12._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
13._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
14._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
15._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
16._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
17._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
18._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
19._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
20._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
21._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
22._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
23._IMC_47___	CT	AA	CG	TT	CT	AC	CC	GT	CT	CT	AA	AG	CT	AG
24._IMC_47___	GG	AG	CG	AA	AG	CC	AA	AA	__	__	AT	GG	GG	AA
25._IMC_47___	AG	AA	CG	AA	AG	AC	GG	AC	__	__	AA	AG	AG	AG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	TT	AA	GG	CC	TT	CC	GG	AA	CC	AC	GG	GG	CC	AC
1._IMC_47___	__	__	__	__	__	CC	GG	AA	__	AC	GG	__	__	AC
2._IMC_47___	__	__	__	__	TT	CC	GG	__	CC	AC	CG	GG	CC	AC
3._IMC_47___	TT	AA	GG	CC	CT	CC	GG	AA	CC	AC	GG	GG	CC	AC
4._IMC_47___	TT	AT	GG	CC	CT	CC	GG	AA	CC	AA	GG	GT	CT	CC
5._IMC_47___	CT	AT	CG	CT	CT	CC	GG	AG	TT	AC	CC	GT	CT	AC
6._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
7._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
8._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
9._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
10._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
11._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
12._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
13._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
14._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
15._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
16._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
17._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
18._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
19._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
20._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
21._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
22._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
23._IMC_47___	CT	AT	CG	CT	CT	CC	GT	AA	TT	AC	CG	GT	CT	AC
24._IMC_47___	AA	AA	GG	GG	AA	GG	CC	__	GG	AC	CG	CC	__	AC
25._IMC_47___	AG	AT	CG	AG	AG	GG	AC	__	AA	AC	CG	AC	__	AC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AA	AG	AT	CT	AG	CC	AC	CT	TT	CC	AT	CG	X_X	X_X
1._IMC_47___	__	__	__	__	AG	__	__	__	__	CC	__	__	X_X	X_X
2._IMC_47___	AA	__	AT	CT	AG	CG	AC	CT	TT	CC	__	__	X_X	X_X
3._IMC_47___	AA	AG	AT	CT	AG	CG	AC	CT	GT	CC	AT	CG	X_X	X_X
4._IMC_47___	AA	GG	AA	TT	AG	__	AC	CT	GT	CC	TT	GG	X_X	X_X
5._IMC_47___	AG	AG	AT	CT	AG	__	AC	CT	GT	CC	AA	GG	X_X	X_X
6._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
7._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
8._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
9._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
10._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
11._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
12._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
13._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
14._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
15._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
16._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
17._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
18._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
19._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
20._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
21._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
22._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
23._IMC_47___	AG	AG	AT	CT	AG	CG	AC	CT	GG	AA	AT	CG	X_X	X_X
24._IMC_47___	__	AG	AT	AG	AG	CG	AC	AG	AA	CC	AT	CG	X_X	X_X
25._IMC_47___	__	AG	AT	AG	AG	CG	AC	AG	CC	AA	AT	CG	X_X	X_X

Input profile: IMC_47

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T6

Dapeng Zhang, 2016

1._IMC_47 RUQ_849B

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

2._IMC_47 RUQ_849

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

3._IMC_47 RUQ_849

95 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._IMC_47

79.5 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: Marper D242

Dapeng Zhang, 2016

5._IMC_47

69.2 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B F401 T1

Dapeng Zhang, 2016

6._IMC_47

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 7

Dapeng Zhang, 2016

7._IMC_47 GC-08-103-3-02

66.7 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

8._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 1 > FP

Dapeng Zhang, 2016

9._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

11._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

12._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 4

Dapeng Zhang, 2016

13._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 10

Dapeng Zhang, 2016

14._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 11

Dapeng Zhang, 2016

15._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 12

Dapeng Zhang, 2016

16._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 3 > FP

Dapeng Zhang, 2016

17._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 5 > FP

Dapeng Zhang, 2016

18._IMC_47

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 8302 6 > FP

Dapeng Zhang, 2016

19._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

20._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

21._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

22._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

23._IMC_47 GC-08-103-3-02

66.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

Notes: 12

24._IMC_47 MITC-000413

51.4 %
35 shared markers

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USDA-SHRS, United States of America

25._IMC_47 GC-08-103-3-2

38.6 %
35 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: Nursery, Block: -, Rep: -, Tree: 1

Notes: Brazil_Selections_Poss_grandparent/ CW

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25