SNP Profiles of IMC 67   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
1._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
2._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
3._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
4._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
5._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
6._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
7._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
8._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
9._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
10._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
11._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
12._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
13._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAA
14._IMC_67___
____GG________GT__CC__GG__AA
15._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
16._IMC_67___
CCAGGGTTCTCCTTGTCCCCAAGGCCAG
17._IMC_67___
__AGGGTT______GT________CCAA
18._IMC_67___
____CG__________________CC__
19._IMC_67___
GGAGCCAAAGCCAAAC____AAGGGGAA
20._IMC_67___
GGAGCCAAAGCCAAAC____AAGGGGAA
21._IMC_67___
GGAGCCAAAGCCAAAC____AAGGGGAA
22._IMC_67___
GGAGCCAAAGCCAAAC____AAGGGGAA
23._IMC_67___
GGAAGGAGAGCCAAAA____AAGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTAAGGCCCTCCGGAACCACGGGTCCAC
1._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
2._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
3._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
4._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
5._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
6._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
7._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
8._IMC_67___
TTAAGGCCCTCCGG__CCACGGGTCCAC
9._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
10._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
11._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
12._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
13._IMC_67___
TTAAGGCCCTCCGG__CCACGGGTCCAC
14._IMC_67___
__________CCGGAA__ACGG____AC
15._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
16._IMC_67___
TTAAGGCCCTCCGGAACCACGGGTCCAC
17._IMC_67___
________TTCCGG__CCACCGGTCCAC
18._IMC_67___
CC______CCCG______ACGG______
19._IMC_67___
AAAAGGGGAGGGCC__GGACCGAC__AC
20._IMC_67___
AAAAGGGGAGGGCC__GGACCGAC__AC
21._IMC_67___
AAAAGGGGAGGGCC__GGACCGAC__AC
22._IMC_67___
AAAAGGGGAGGGCC__GGACCGAC__AC
23._IMC_67___
AGATCGAAAGGGCC__AAACGGCC__CC
 29 30 31 32 33 34 35 36 37 38 39 40   
_Input profile
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
1._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
2._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
3._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
4._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
5._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
6._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
7._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
8._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
9._IMC_67___
AAGG__CTAGCGACCTGTCCTTGGX_XX_X
10._IMC_67___
AAGG__CTAGCGACCTGTCCTTGGX_XX_X
11._IMC_67___
AAGG__CTAGCGACCTGTCCTTGGX_XX_X
12._IMC_67___
AAGG__CTAGCGACCTGTCCTTGGX_XX_X
13._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
14._IMC_67___
________AG________CC____X_XX_X
15._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
16._IMC_67___
AAGGAACTAGCGACCTGTCCTTGGX_XX_X
17._IMC_67___
AA__AACTAGCGACCTGTCC____X_XX_X
18._IMC_67___
____AT__AAGGACCT__AA____X_XX_X
19._IMC_67___
__GGAAAGAGCGACAGACCCTTGGX_XX_X
20._IMC_67___
__GGAAAGAGCGACAGACCCTTGGX_XX_X
21._IMC_67___
__GGAAAGAGCGACAGACCCTTGGX_XX_X
22._IMC_67___
__GGAAAGAGCGACAGACCCTTGGX_XX_X
23._IMC_67___
__GGAAAGGGGGCCAACCACAACGX_XX_X

Input profile: IMC_67

 
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Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

1._IMC_67 GC-05-082-2-33

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

3._IMC_67

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

4._IMC_67

identical
40 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

5._IMC_67

identical
40 shared markers

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Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

6._IMC_67

identical
40 shared markers

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Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

7._IMC_67

identical
40 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

8._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

9._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

10._IMC_67 GC-05-82-2-33

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

11._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

12._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.996

15._IMC_67 RUQ_1056

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

16._IMC_67

98.8 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

17._IMC_67 RUQ_1056

95.8 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

18._IMC_67 IMC67

61.5 %
13 shared markers

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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

38.6 %
35 shared markers

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USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25