SNP Profiles of LCTEEN 46 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CC	GG	CC	TT	CT	AC	CT	GG	TT	CC	AA	GG	CC	AA
1._GC-03-033-3-12	CC	GG	CC	TT	CT	AC	CT	GG	TT	CC	AA	GG	CC	AA
2._GC-03-033-3-12	CC	GG	CC	TT	CT	AC	CT	GG	TT	CC	AA	GG	CC	AA
3._LCT_EEN_46	CC	GG	CC	TT	CT	AC	CT	GG	TT	CC	AA	GG	CC	AA
4._GC-03-033-3-12	TT	AG	CG	TT	CC	_	CT	_	CT	CC	TT	GG	CT	AA
5._LCT_EEN_46	TT	AG	CG	TT	CC	_	CT	_	CT	CC	TT	GG	CT	AA
6._GC-03-033-3-12	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
7._GC-03-033-3-12	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
8._GC-03-033-3-12	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
9._GC-03-033-3-12	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
10._LCT_EEN_46	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
11._LCT_EEN_46	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
12._LCT_EEN_46	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
13._LCT_EEN_46	TT	AG	CG	TT	CC	_	CT	GT	CT	CC	TT	GG	CT	AA
14._LCT_EEN_46	TT	AG	CG	TT	CC	CC	CT	GT	CT	CC	TT	GG	CT	AA
15._LCT_EEN_46	TT	AG	CG	TT	CC	CC	CT	GT	CT	CC	TT	GG	CT	AA
16._GC-03-033-3-12	CT	AG	GG	CC	TT	AC	CC	TT	CC	CT	AA	AA	CC	AG
17._LCT_EEN_46	CT	AG	GG	CC	TT	AC	CC	TT	CC	CT	AA	AA	CC	AG
18._MITC-000412	AA	AA	CC	GG	AA	AA	GG	AA	_	_	AA	AA	GG	GG

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CT	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA
1._GC-03-033-3-12	CT	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA
2._GC-03-033-3-12	CT	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA
3._LCT_EEN_46	CT	AT	GG	CT	TT	CC	GT	AA	TT	CC	GG	GG	CC	AA
4._GC-03-033-3-12	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
5._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
6._GC-03-033-3-12	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
7._GC-03-033-3-12	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
8._GC-03-033-3-12	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
9._GC-03-033-3-12	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
10._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
11._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
12._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
13._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AA	TT	CC	CC	GT	CT	AA
14._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA
15._LCT_EEN_46	TT	AA	GG	CT	CT	GG	GG	AG	TT	CC	CC	GT	CT	AA
16._GC-03-033-3-12	TT	AT	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC
17._LCT_EEN_46	TT	AT	GG	CT	CC	GG	GG	AG	TT	AC	CC	GT	TT	CC
18._MITC-000412	AA	AA	GG	AA	GG	CC	CC	_	AA	AA	CC	AA	_	CC

	29	30	31	32	33	34	35	36	37	38	39	40
_Input profile	AG	AA	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X
1._GC-03-033-3-12	AG	AA	AT	CC	AG	CC	CC	TT	GG	AC	AT	GG	X_X	X_X
2._GC-03-033-3-12	AG	AA	AT	CC	AG	CC	CC	TT	GG	_	AT	GG	X_X	X_X
3._LCT_EEN_46	AG	AA	AT	CC	AG	CC	CC	TT	GG	_	AT	GG	X_X	X_X
4._GC-03-033-3-12	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
5._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
6._GC-03-033-3-12	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
7._GC-03-033-3-12	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
8._GC-03-033-3-12	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
9._GC-03-033-3-12	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
10._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
11._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
12._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
13._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
14._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
15._LCT_EEN_46	AG	AG	AT	CC	AA	CC	CC	CC	TT	AC	AA	CC	X_X	X_X
16._GC-03-033-3-12	AG	GG	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X
17._LCT_EEN_46	AG	GG	AA	CC	AA	CC	AC	CT	GT	AA	TT	GG	X_X	X_X
18._MITC-000412	_	GG	AA	GG	AA	GG	AA	GG	AA	CC	TT	GG	X_X	X_X

Input profile: LCT_EEN_46

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Mars Center for Cocoa Science, Brazil

Location: 3312 5 > FP

Dapeng Zhang, 2016

1._LCT_EEN_46 GC-03-033-3-12

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5 > FP3

2._LCT_EEN_46 GC-03-033-3-12

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP2

3._LCT_EEN_46

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 4 > FP

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

4._LCT_EEN_46 GC-03-033-3-12

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

5._LCT_EEN_46

63.2 %
38 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 2

Dapeng Zhang, 2016

Population Assignment:

Dapeng Zhang, 2016

6._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 10

Notes: 10

7._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

8._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 7

Notes: 7

9._LCT_EEN_46 GC-03-033-3-12

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1 > FP1

10._LCT_EEN_46

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 7

Dapeng Zhang, 2016

11._LCT_EEN_46

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 9

Dapeng Zhang, 2016

12._LCT_EEN_46

62.8 %
39 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 10

Dapeng Zhang, 2016

13._LCT_EEN_46

62.8 %
39 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 3312 1 > FP

Dapeng Zhang, 2016

14._LCT_EEN_46

61.3 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 478

Dapeng Zhang, 2016

15._LCT_EEN_46

61.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 4A A 17 T1

Dapeng Zhang, 2016

16._LCT_EEN_46 GC-03-033-3-12

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

17._LCT_EEN_46

50 %
40 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 3312 6

Dapeng Zhang, 2016

18._LCT_EEN_46 MITC-000412

22.9 %
35 shared markers

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USDA-SHRS, United States of America

Key to SNP Markers

Key to SNP Markers

1	TcSNP1520	2	TcSNP1484	3	TcSNP1458	4	TcSNP1442	5	TcSNP1414
6	TcSNP1350	7	TcSNP1270	8	TcSNP1253	9	TcSNP1165	10	TcSNP1144
11	TcSNP1075	12	TcSNP1062	13	TcSNP1060	14	TcSNP998	15	TcSNP994
16	TcSNP953	17	TcSNP929	18	TcSNP917	19	TcSNP891	20	TcSNP872
21	TcSNP723	22	TcSNP645	23	TcSNP619	24	TcSNP591	25	TcSNP577
26	TcSNP560	27	TcSNP534	28	TcSNP529	29	TcSNP469	30	TcSNP429
31	TcSNP372	32	TcSNP242	33	TcSNP230	34	TcSNP226	35	TcSNP193
36	TcSNP151	37	TcSNP150	38	TcSNP144	39	TcSNP32	40	TcSNP25