SNP Profiles of NA 95   View Data

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 1234567891011121314
_Input profile
CCAACGCTTTAACTGTCTTTAAAACCAG
1._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
2._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
3._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
4._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
5._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
6._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
7._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
8._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
9._GC-08-168-4-11
CCAACGCTTTAACTGTCTTTAAAACCAG
10._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
11._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
12._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
13._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
14._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
15._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
16._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
17._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
18._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
19._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
20._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
21._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
22._GC-01-122-6-19
CCAACGCTTTAACTGTCTTTAAAACCAG
23._NA_95
CCAACGCTTTAACTGTCTTTAAAACCAG
24._GC-08-168-4-11
CCAACGCTTT_CTGTCTTTAAAACCAG
25._NA_95
CCAACGCTTT_CTGTCTTTAAAACCAG
26._NA_95
TTAAGGCCTTAACCTTTTTTAAAACTGG
27._GC-08-168-4-11
TTAAGGCCTTAACCTTTTTTAAAACTGG
28._GC-01-122-6-19
TTAAGGCCTTAACCTTTTTTAAAACTGG
29._NA_95
TTAAGGCCTTAACCTTTTTTAAAACTGG
30._NA_95
CCAACCTTTTCCTTTTCCCCAAGGCCAG
 1516171819202122232425262728
_Input profile
CTAAGGTTCCGGGTGGTTACCCTTTTCC
1._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
2._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
3._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
4._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
5._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
6._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
7._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
8._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
9._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTTTTCC
10._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
11._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
12._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
13._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
14._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
15._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
16._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
17._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
18._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
19._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
20._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
21._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
22._GC-01-122-6-19
CTAAGGTTCCGGGTGGTTACCCTTTTCC
23._NA_95
CTAAGGTTCCGGGTGGTTACCCTTTTCC
24._GC-08-168-4-11
CTAAGGTTCCGGGTGGTTACCCTT_CC
25._NA_95
CTAAGGTTCCGGGTGGTTACCCTT_CC
26._NA_95
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
27._GC-08-168-4-11
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
28._GC-01-122-6-19
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
29._NA_95
CTAAGGTTCCGGGGGGTTCCCCTTTTCC
30._NA_95
TTATGGCCCTCGGGAACCAAGGGGTTCC
 293031323334353637383940  
_Input profile
AGGGATCTAACGACCCTTCCATGGX_XX_X
1._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
2._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
3._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
4._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
5._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
6._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
7._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
8._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
9._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
10._GC-01-122-6-19
AGGGATCTAACGACCCTTCCATGGX_XX_X
11._GC-01-122-6-19
AGGGATCTAACGACCCTTCCATGGX_XX_X
12._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
13._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
14._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
15._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
16._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
17._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
18._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
19._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
20._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
21._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
22._GC-01-122-6-19
AGGGATCTAACGACCCTT_ATGGX_XX_X
23._NA_95
AGGGATCTAACGACCCTT_ATGGX_XX_X
24._GC-08-168-4-11
AGGGATCTAACGACCCTTCCATGGX_XX_X
25._NA_95
AGGGATCTAACGACCCTTCCATGGX_XX_X
26._NA_95
AAGGAACCAGCCACCTGTACTTGGX_XX_X
27._GC-08-168-4-11
AAGGAACCAGCCACCTGTACTTGGX_XX_X
28._GC-01-122-6-19
AAGGAACCAGCCACCTGTACTTGGX_XX_X
29._NA_95
AAGGAACCAGCCACCTGTACTTGGX_XX_X
30._NA_95
AAGGAACCAACCAACCGTACTTGGX_XX_X

Input profile: NA_95

 
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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

1._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

6._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

7._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

10._NA_95 GC-01-122-6-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

12._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

13._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

14._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

15._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

16._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

17._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

18._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

20._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

21._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

22._NA_95 GC-01-122-6-19

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

23._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

24._NA_95 GC-08-168-4-11

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

25._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

26._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

27._NA_95 GC-08-168-4-11

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

28._NA_95 GC-01-122-6-19

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

29._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

30._NA_95

56.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP645 23TcSNP619 24TcSNP591 25TcSNP577
26TcSNP560 27TcSNP534 28TcSNP529 29TcSNP469 30TcSNP429
31TcSNP372 32TcSNP242 33TcSNP230 34TcSNP226 35TcSNP193
36TcSNP151 37TcSNP150 38TcSNP144 39TcSNP32 40TcSNP25