SNP Profiles of SCA-6   View Data

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 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAATTTTCTTTAGTTTTTT
1._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
2._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
3._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
4._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
5._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
6._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
7._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
8._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
9._SCA_6___
ATCCCCCCAGAA__TTCTTTAGTTTTTT
10._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
11._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
12._SCA_6___
ATCCCCCC________CTTTAG__TT__
13._SCA_6___
ATCCCCCC________CTTTAG__TT__
14._SCA_6___
ATCCCCCC________CTTTAG__TT__
15._SCA_6___
ATCCCCCC________CTTTAG__TT__
16._SCA_6___
ATCCCCCC________CTTTAG__TT__
17._SCA_6___
ATCCCCCC________CTTTAG__TT__
18._SCA_6___
ATCCCCCC________CTTTAG__TT__
19._SCA_6___
ATCCCCCC________CTTTAG__TT__
20._SCA_6___
ATCCCCCC________CTTTAG__TT__
21._SCA_6___
ATCCCCCC________CTTTAG__TT__
22._SCA_6___
ATCCCCCC________CTTTAG__TT__
23._SCA_6___
ATCCCCCC________CTTTAG__TT__
24._SCA_6___
ATCCCCCC________CTTTAG__TT__
25._SCA_6___
ATCCCCCC________CTTTAG__TT__
26._SCA_6___
ATCCCCCC________CTTTAG__TT__
27._SCA_6___
ATCCCCCC________CTTTAG__TT__
28._SCA_6___
ATCCCCCC________CTTTAG__TT__
29._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
30._SCA_6___
ATCCCCCC________CTTTAG__TT__
31._SCA_6___
ATCCCCCC________CTTTAG__TT__
32._SCA_6___
ATCCCCCC________CTTTAG__TT__
33._SCA_6___
ATCCCCCC________CTTTAG__TT__
34._SCA_6___
ATCCCCCC________CTTTAG__TT__
35._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
36._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
37._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
38._SCA_6___
ATCCCCCCAGAATTTTCTTTAGTTTTTT
39._SCA_6___
____CCCC____CT__CT____TTTT__
40._SCA_6___
ATCCCCCC________CTTTAG__TT__
41._SCA_6___
______CC____CT______________
42._SCA_6___
______CC____CT______________
43._SCA_6___
ATCCCCCC________CCTTAG__TT__
44._SCA_6___
______CC________CT______TT__
45._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
46._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
47._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
48._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
49._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
50._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
51._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
52._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
53._SCA_6___
ATCC__CCAGAA__AAAG__AGAAAAAA
54._SCA_6___
ATAC__ACAGAG__AGGG__AGAAAGAG
55._SCA_6___
ATAC__ACAGAG__AGGG__AGAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCCCCAACTGGAAAAGG
1._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
2._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
3._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
4._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
5._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
6._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
7._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
8._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
9._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
10._SCA_6___
ATAAAAGGCCCGCCCCAACTGG__AAGG
11._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
12._SCA_6___
______GG____CC________AAAA__
13._SCA_6___
______GG____CC________AAAA__
14._SCA_6___
______GG____CC________AAAA__
15._SCA_6___
______GG____CC________AAAA__
16._SCA_6___
______GG____CC________AAAA__
17._SCA_6___
______GG____CC________AAAA__
18._SCA_6___
______GG____CC________AAAA__
19._SCA_6___
______GG____CC________AAAA__
20._SCA_6___
______GG____CC________AAAA__
21._SCA_6___
______GG____CC________AAAA__
22._SCA_6___
______GG____CC________AAAA__
23._SCA_6___
______GG____CC________AAAA__
24._SCA_6___
______GG____CC________AAAA__
25._SCA_6___
______GG____CC________AAAA__
26._SCA_6___
______GG____CC________AAAA__
27._SCA_6___
______GG____CC________AAAA__
28._SCA_6___
______GG____CC__________AA__
29._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
30._SCA_6___
______GG____CC________AAAA__
31._SCA_6___
______GG____CC________AAAA__
32._SCA_6___
______GG____CC________AAAA__
33._SCA_6___
______GG____CC________AAAA__
34._SCA_6___
______GG____CC________AAAA__
35._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
36._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
37._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
38._SCA_6___
ATAAAAGGCCCGCCCCAACTGGAAAAGG
39._SCA_6___
__________CG________GG__AAGG
40._SCA_6___
______GG____CC________AAAA__
41._SCA_6___
______GGCC__________________
42._SCA_6___
______GGCC__________________
43._SCA_6___
______GG____CC________AAAA__
44._SCA_6___
____AA____CG__CC____GG__AAGG
45._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
46._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
47._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
48._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
49._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
50._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
51._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
52._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
53._SCA_6___
ATAAAAGGGG__CCGGAAAGGGAAAACC
54._SCA_6___
ATACAGAGCG__CCAGAGAAGGATAACG
55._SCA_6___
ATACAGAGCG__CCAGAGAAGGATAACG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
1._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
2._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
3._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
4._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
5._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
6._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
7._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
8._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
9._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
10._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
11._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
12._SCA_6___
CCTT______CG__AAGG____AG____
13._SCA_6___
CCTT______CG__AAGG____AG____
14._SCA_6___
CCTT______CG__AAGG____AG____
15._SCA_6___
CCTT______CG__AAGG____AG____
16._SCA_6___
CCTT______CG__AAGG____AG____
17._SCA_6___
CCTT______CG__AAGG____AG____
18._SCA_6___
CCTT______CG__AAGG____AG____
19._SCA_6___
CCTT______CG__AAGG____AG____
20._SCA_6___
CCTT______CG__AAGG____AG____
21._SCA_6___
CCTT______CG__AAGG____AG____
22._SCA_6___
CCTT______CG__AAGG____AG____
23._SCA_6___
CCTT______CG__AAGG____AG____
24._SCA_6___
CCTT______CG__AAGG____AG____
25._SCA_6___
CCTT______CG__AAGG____AG____
26._SCA_6___
CCTT______CG__AAGG____AG____
27._SCA_6___
CCTT______CG__AAGG____AG____
28._SCA_6___
CCTT______CG__AAGG____AG____
29._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
30._SCA_6___
CCTT______CG__AAGG____AG____
31._SCA_6___
CCTT______CG__AAGG____AG____
32._SCA_6___
CCTT______CG__AAGG____AG____
33._SCA_6___
CCTT______CG__AAGG____AG____
34._SCA_6___
CCTT______CG__AAGG____AG____
35._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
36._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
37._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
38._SCA_6___
CCTTTTTTGGCGCCAAGGTTTTAGCCGG
39._SCA_6___
CC______GGCGCCAAGG____AGCC__
40._SCA_6___
CCTT______CG__AAGG____AG____
41._SCA_6___
CC________CG__AA________CC__
42._SCA_6___
CC________CG__AA________CC__
43._SCA_6___
CCTT______CG__AAGG____AG____
44._SCA_6___
GG______GGCG________TT__CC__
45._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
46._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
47._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
48._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
49._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
50._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
51._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
52._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
53._SCA_6___
GGTTAAAAGGCGCCAACCAAAAAGGGGG
54._SCA_6___
CGATAAACAGCGCCAGACACAAAGAGAG
55._SCA_6___
CGATAAACAGCGCCAGACACAAAGAGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGGTTCTAGAAAACCAAAAAAGGTTCC
1._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
2._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
3._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
4._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
5._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
6._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
7._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
8._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
9._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
10._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
11._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
12._SCA_6___
______CT________________TTCC
13._SCA_6___
______CT________________TTCC
14._SCA_6___
______CT________________TTCC
15._SCA_6___
______CT________________TTCC
16._SCA_6___
______CT________________TTCC
17._SCA_6___
______CT________________TTCC
18._SCA_6___
______CT________________TTCC
19._SCA_6___
______CT________________TTCC
20._SCA_6___
______CT________________TTCC
21._SCA_6___
______CT________________TTCC
22._SCA_6___
______CT________________TTCC
23._SCA_6___
______CT________________TTCC
24._SCA_6___
______CT________________TTCC
25._SCA_6___
______CT________________TTCC
26._SCA_6___
______CT________________TTCC
27._SCA_6___
______CT________________TTCC
28._SCA_6___
______CT________________TTCC
29._SCA_6___
CGGGTTCTAGGGAACCAAAAAAGGTTCC
30._SCA_6___
______CT________________TTCC
31._SCA_6___
______CT________________TTCC
32._SCA_6___
______CT________________TTCC
33._SCA_6___
______CT________________TTCC
34._SCA_6___
______CT________________TTCC
35._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
36._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
37._SCA_6___
CGGGTTCTAGAAAACCAAAAAAGGTTCC
38._SCA_6___
CGGGTTCTAG__AACCAAAAAAGGTTCC
39._SCA_6___
__GGTT____AA____________TT__
40._SCA_6___
______CT________________TTCC
41._SCA_6___
__________AA________________
42._SCA_6___
__________AA________________
43._SCA_6___
______TT________________TTCC
44._SCA_6___
____TT__AG______________TT__
45._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
46._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
47._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
48._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
49._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
50._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
51._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
52._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
53._SCA_6___
CGCC__AG__AAAAGG__AAAACCAAGG
54._SCA_6___
GGCC__GG__AGAAGG__AGAGACAGAG
55._SCA_6___
GGCC__GG__AGAAGG__AGAGACAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCCCCCTCCCCGGACAAGGGGAACT
1._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
2._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
3._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
4._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
5._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
6._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
7._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
8._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
9._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
10._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
11._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAA__
12._SCA_6___
____CC__CTCCCC__ACAAGGGG____
13._SCA_6___
____CC__CTCCCC__ACAAGGGG____
14._SCA_6___
____CC__CTCCCC__ACAAGGGG____
15._SCA_6___
____CC__CTCCCC__ACAAGGGG____
16._SCA_6___
____CC__CTCCCC__ACAAGGGG____
17._SCA_6___
____CC__CTCCCC__ACAAGGGG____
18._SCA_6___
____CC__CTCCCC__ACAAGGGG____
19._SCA_6___
____CC__CTCCCC__ACAAGGGG____
20._SCA_6___
____CC__CTCCCC__ACAAGGGG____
21._SCA_6___
____CC__CTCCCC__ACAAGGGG____
22._SCA_6___
____CC__CTCCCC__ACAAGGGG____
23._SCA_6___
____CC__CTCCCC__ACAAGGGG____
24._SCA_6___
____CC__CTCCCC__ACAAGGGG____
25._SCA_6___
____CC__CTCCCC__ACAAGGGG____
26._SCA_6___
____CC__CTCCCC__ACAAGGGG____
27._SCA_6___
____CC__CTCCCC__ACAAGGGG____
28._SCA_6___
____CC__CTCCCC__ACAAGGGG____
29._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
30._SCA_6___
____CC__CTCCCC__ACAAGGGG____
31._SCA_6___
____CC__CTCCCC__ACAAGGGG____
32._SCA_6___
____CC__CTCCCC__ACAAGGGG____
33._SCA_6___
____CC__CTCCCC__ACAAGGGG____
34._SCA_6___
____CC__CTCCCC__ACAAGGGG____
35._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
36._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
37._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
38._SCA_6___
TTGGCCCCCTCCCCGGACAAGGGGAACT
39._SCA_6___
TT__CCCCCTCC__GGCCAAGGGGAA__
40._SCA_6___
____CC__CTCCCC__ACAAGGGG____
41._SCA_6___
__GG____________ACAA__GGAA__
42._SCA_6___
__GG____________ACAA__GGAA__
43._SCA_6___
____CC__TTCCCC__ACAAGGGG____
44._SCA_6___
____GGCC__CC__GGCCAA________
45._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
46._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
47._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
48._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
49._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
50._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
51._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
52._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
53._SCA_6___
AAGGGGGGAGCCCCGGACAACCCCAA__
54._SCA_6___
AAAGGGAGGGACCGGGAAAAACCCAG__
55._SCA_6___
AAAGGGAGGGACCGGGAAAAACCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAACCCCGGCCCCAAAACCCCAACCTT
1._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
2._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
3._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
4._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
5._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
6._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
7._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
8._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
9._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
10._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
11._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
12._SCA_6___
__AACC__________AACC______TT
13._SCA_6___
__AACC__________AACC______TT
14._SCA_6___
__AACC__________AACC______TT
15._SCA_6___
__AACC__________AACC______TT
16._SCA_6___
__AACC__________AACC______TT
17._SCA_6___
__AACC__________AACC______TT
18._SCA_6___
__AACC__________AACC______TT
19._SCA_6___
__AACC__________AACC______TT
20._SCA_6___
__AACC__________AACC______TT
21._SCA_6___
__AACC__________AACC______TT
22._SCA_6___
__AACC__________AACC______TT
23._SCA_6___
__AACC__________AACC______TT
24._SCA_6___
__AACC__________AACC______TT
25._SCA_6___
__AACC__________AACC______TT
26._SCA_6___
__AACC__________AACC______TT
27._SCA_6___
__AACC__________AACC______TT
28._SCA_6___
__AACC__________AACC______TT
29._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
30._SCA_6___
__AGCC__________AACC______TT
31._SCA_6___
__AGCC__________AACC______TT
32._SCA_6___
__AGCC__________AACC______TT
33._SCA_6___
__AGCC__________AACC______TT
34._SCA_6___
__AGCC__________AACC______TT
35._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
36._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
37._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
38._SCA_6___
CGAACCCCGGCCCCAAAACCCCAACCTT
39._SCA_6___
________________AACC____CCTT
40._SCA_6___
__AGCC__________AACC______TT
41._SCA_6___
__AG____________AACC____CC__
42._SCA_6___
__AG____________AACC____CC__
43._SCA_6___
__AGCT__________AACC______TT
44._SCA_6___
CG________________GG________
45._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
46._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
47._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
48._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
49._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
50._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
51._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
52._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
53._SCA_6___
____GGCCGGCCCC__AAGGGGAACCAA
54._SCA_6___
____AGACAGCCAC__ACCGGGATACAA
55._SCA_6___
____AGACAGCCAC__ACCGGGATACAA
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
1._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
2._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
3._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
4._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
5._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
6._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
7._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
8._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
9._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
10._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
11._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
12._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
13._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
14._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
15._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
16._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
17._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
18._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
19._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
20._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
21._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
22._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
23._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
24._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
25._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
26._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
27._SCA_6___
CCCC__GG__CTGG______X_XX_XX_XX_X
28._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
29._SCA_6___
CCCCCCGGCCCTGGCCTTAGX_XX_XX_XX_X
30._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
31._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
32._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
33._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
34._SCA_6___
CCCC__GG__CTGGCC____X_XX_XX_XX_X
35._SCA_6___
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
36._SCA_6___
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
37._SCA_6___
CCCCCCGGCCCTGG__CCCCX_XX_XX_XX_X
38._SCA_6___
CCCCCCGGCCCTGGCCCCCCX_XX_XX_XX_X
39._SCA_6___
______GGCCCTGG______X_XX_XX_XX_X
40._SCA_6___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
41._SCA_6___
__CC____CC__GG______X_XX_XX_XX_X
42._SCA_6___
__CC____CC__GG______X_XX_XX_XX_X
43._SCA_6___
CCCC__GG__TTGGCC____X_XX_XX_XX_X
44._SCA_6___
CC__________________X_XX_XX_XX_X
45._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
46._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
47._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
48._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
49._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
50._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
51._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
52._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
53._SCA_6___
GG__GG____AGCCGGAAAGX_XX_XX_XX_X
54._SCA_6___
AG__GG____GGACAGATAGX_XX_XX_XX_X
55._SCA_6___
AG__GG____GGACAGATAGX_XX_XX_XX_X

Input profile: SCA_6 GC-01-026-2-03

 
 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

1._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

2._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

4._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

5._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

6._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

7._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

8._SCA_6 GC-01-026-2-03

identical
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

9._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

11._SCA_6 GC-01-026-2-03

identical
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

12._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

13._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

14._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

15._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

16._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

17._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

18._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

19._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

20._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

21._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

22._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016

23._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

24._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

26._SCA_6

identical
40 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

27._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

28._SCA_6

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

29._SCA_6 GC-01-026-2-03

98.9 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

30._SCA_6 RUQ_234

98.8 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

31._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

32._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

33._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

34._SCA_6

98.8 %
40 shared markers

 View  View all  Clone  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

35._SCA_6 GC-01-26-2-03

97.9 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

36._SCA_6 GC-01-26-2-03

97.9 %
94 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

37._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

38._SCA_6 GC-01-26-2-03

97.8 %
93 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

39._SCA_6 RUQ_234

97.6 %
41 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

40._SCA_6

97.5 %
40 shared markers

 View  View all  Clone  Any
Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

41._SCA_6 RUQ_234B

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

42._SCA_6 RUQ_234

95.2 %
21 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Sca
0.997

43._SCA_6

92.5 %
40 shared markers

 View  View all  Clone  Any
Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

44._SCA_6 SCA6

86.5 %
26 shared markers

 View  View all  Clone  Any
Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

45._SCA_6 RUQ_234

52.5 %
80 shared markers

 View  View all  Clone  Any
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

46._SCA_6 MITC-000343

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000344

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000345

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000347

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000348

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000349

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000376

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 MITC-000452

52.5 %
80 shared markers

 View  View all  Clone  Any
USDA-SHRS, United States of America
 Mars, 2018

54._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

55._SCA_6 SCA_6_Fld#_16_Plt#_1

38.8 %
80 shared markers

 View  View all  Clone  Any
USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240