SNP Profiles of IMC-47   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTACGGAGCTCTCTCTAGCTCTCT
1._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
2._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
3._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
4._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
5._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
6._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
7._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
8._IMC_47___
AAACCTACGGAGCTCTCTCTAGCTCTCT
9._IMC_47___
AAACCTAC________CTCTAG__CT__
10._IMC_47___
AAACCTAC________CTCTAG__CT__
11._IMC_47___
AAACCTAC________CTCTAG__CT__
12._IMC_47___
AAACCTAC________CTCTAG__CT__
13._IMC_47___
AAACCTAC________CTCTAG__CT__
14._IMC_47___
AAACCTAC________CTCTAG__CT__
15._IMC_47___
AAACCTAC________CTCTAG__CT__
16._IMC_47___
AAACCTAC________CTCTAG__CT__
17._IMC_47___
AAACCTAC________CTCTAG__CT__
18._IMC_47___
AAACCTAC________CCCTAG__CT__
19._IMC_47___
ATCCCCAC________CCCTAG__CT__
20._IMC_47___
____CCAC____TT__CC____TTTT__
21._IMC_47___
______AC____TT______________
22._IMC_47___
ATCCCCAC________CCCTAG__TT__
23._IMC_47___
AACCCTAA________CTCCGG__CT__
24._IMC_47___
AAAC__ACGGAG__AGAG__AGAGAGAG
25._IMC_47___
ATCC__ACAGAG__AGGG__AGAAAAAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATACAAAGCGCCCGCTAATTGGATATGG
1._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
2._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
3._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
4._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
5._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
6._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
7._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
8._IMC_47___
ATACAAAGCGCCCGCTAATTGGATATGG
9._IMC_47___
______AG____CG________ATAT__
10._IMC_47___
______AG____CG________ATAT__
11._IMC_47___
______AG____CG________ATAT__
12._IMC_47___
______AG____CG________ATAT__
13._IMC_47___
______AG____CG________ATAT__
14._IMC_47___
______AG____CG________ATAT__
15._IMC_47___
______AG____CG________ATAT__
16._IMC_47___
______AG____CG________ATAT__
17._IMC_47___
______AG____CG________ATAT__
18._IMC_47___
______AG____CG________AAAT__
19._IMC_47___
______GG____GG________ATAT__
20._IMC_47___
__________CC________GG__ATCC
21._IMC_47___
______GGCT__________________
22._IMC_47___
______GG____GG________ATAT__
23._IMC_47___
______GG____GG________TTAA__
24._IMC_47___
ATACAAAGCG__CGAGAAAAGGATATCC
25._IMC_47___
ATAAAGGGCC__GGAGAAAAGGATATGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTAGCGACAGGGGTGTAACCAG
1._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
2._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
3._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
4._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
5._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
6._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
7._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
8._IMC_47___
CCATTTGTAGCGACAGGGGTGTAACCAG
9._IMC_47___
CCAT______CG__AGGG____AA____
10._IMC_47___
CCAT______CG__AGGG____AA____
11._IMC_47___
CCAT______CG__AGGG____AA____
12._IMC_47___
CCAT______CG__AGGG____AA____
13._IMC_47___
CCAT______CG__AGGG____AA____
14._IMC_47___
CCAT______CG__AGGG____AA____
15._IMC_47___
CCAT______CG__AGGG____AA____
16._IMC_47___
CCAT______CG__AGGG____AA____
17._IMC_47___
CCAT______CG__AGGG____AA____
18._IMC_47___
CCAT______CC__AAGT____AA____
19._IMC_47___
CCAA______GG__AGGT____AG____
20._IMC_47___
CC______GGCGCCAATT____AGCC__
21._IMC_47___
CC________GG__AA________CC__
22._IMC_47___
CCAA______GG__AATT____AG____
23._IMC_47___
CCAT______GG__AAGT____AG____
24._IMC_47___
GGATAAACAGCGACAGCCACACAAGGAG
25._IMC_47___
GGAAAAACGGCGCCAAAACCAAAGGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGATCCAGAAAACTACAGAGGGCTCT
1._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
2._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
3._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
4._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
5._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
6._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCTCT
7._IMC_47___
CCGGATCCAGAA__CTACAGAGGGCTCT
8._IMC_47___
CCGGATCCAGAAAACTACAGAGGGCT__
9._IMC_47___
______CC________________CTCT
10._IMC_47___
______CC________________CTCT
11._IMC_47___
______CC________________CTCT
12._IMC_47___
______CC________________CTCT
13._IMC_47___
______CC________________CTCT
14._IMC_47___
______CC________________CTCT
15._IMC_47___
______CC________________CTCT
16._IMC_47___
______CC________________CTCT
17._IMC_47___
______CC________________CT__
18._IMC_47___
______CT________________CTCT
19._IMC_47___
______TT________________CTCC
20._IMC_47___
__GGTT____GG____________CT__
21._IMC_47___
__________GG________________
22._IMC_47___
______TT________________CTCC
23._IMC_47___
______TT________________CTCC
24._IMC_47___
GGCC__GG__AAAAAG__AGAGCCAGAG
25._IMC_47___
GGCC__AA__GGAAGG__GGAGACAGGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAGCGCTTTACCGAGAAAGGTGTAGCT
1._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
2._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
3._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
4._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
5._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
6._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
7._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
8._IMC_47___
TTAGCGCTTTACCGAGAAAGGTGTAGCT
9._IMC_47___
____CG__TTACCG__AAAGGTGT____
10._IMC_47___
____CG__TTACCG__AAAGGTGT____
11._IMC_47___
____CG__TTACCG__AAAGGTGT____
12._IMC_47___
____CG__TTACCG__AAAGGTGT____
13._IMC_47___
____CG__TTACCG__AAAGGTGT____
14._IMC_47___
____CG__TTACCG__AAAGGTGT____
15._IMC_47___
____CG__TTACCG__AAAGGTGT____
16._IMC_47___
____CG__TTACCG__AAAGGTGT____
17._IMC_47___
____CG__TTACCG__AAAGGTGT____
18._IMC_47___
________TTACGG__CCAGGTGG____
19._IMC_47___
____CG__TTACCG__CCAGGGGG____
20._IMC_47___
TT__CGCCTTAC__GGCCAGGGGGAG__
21._IMC_47___
__GG____________CCAG__GGAG__
22._IMC_47___
____CC__TTACCG__CCAGGGGG____
23._IMC_47___
________TTACGG__CCAGGTGG____
24._IMC_47___
AAAGCGAGAAACCGAGAAAGACACAG__
25._IMC_47___
AAGGCGGGAAACCGGGCCAGCCCCAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCAACTACGGCCACAAACCGCTAAACTT
1._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
2._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
3._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
4._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
5._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
6._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
7._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
8._IMC_47___
CCAACTACGGCCACAAACCGCTAAACTT
9._IMC_47___
__AACT__________ACCG______TT
10._IMC_47___
__AACT__________ACCG______TT
11._IMC_47___
__AACT__________ACCG______TT
12._IMC_47___
__AACT__________ACCG______TT
13._IMC_47___
__AACT__________ACCG______TT
14._IMC_47___
__AACT__________ACCG______TT
15._IMC_47___
__AACT__________ACCG______TT
16._IMC_47___
__AACT__________ACCG______TT
17._IMC_47___
__AACT__________ACCG______TT
18._IMC_47___
__AGCT__________ACCG______TT
19._IMC_47___
__AACC__________ACCG______CC
20._IMC_47___
________________ACCG____ACCC
21._IMC_47___
__AA____________ACCG____AC__
22._IMC_47___
__AACC__________ACCG______CC
23._IMC_47___
__AACC__________CCGG______CC
24._IMC_47___
____AGACGGCCAC__ACCGAGAAACAA
25._IMC_47___
____GGACAGACAC__ACCGGGATACGG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
1._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
2._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
3._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
4._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
5._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
6._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
7._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
8._IMC_47___
CTCTCTAGCCCTGTCTATGGX_XX_XX_XX_X
9._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
10._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
11._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
12._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
13._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
14._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
15._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
16._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
17._IMC_47___
CTCT__AG__CTGTCT____X_XX_XX_XX_X
18._IMC_47___
CTCT__AG__CTGTTT____X_XX_XX_XX_X
19._IMC_47___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
20._IMC_47___
______AACCCTGT______X_XX_XX_XX_X
21._IMC_47___
__CC____CC__GT______X_XX_XX_XX_X
22._IMC_47___
TTCC__AA__CTGTCT____X_XX_XX_XX_X
23._IMC_47___
TTCC__AA__TTGTCT____X_XX_XX_XX_X
24._IMC_47___
AG__AG____AGACAGATGGX_XX_XX_XX_X
25._IMC_47___
AA__AG____AGAAAGATGGX_XX_XX_XX_X

Input profile: IMC_47 GC-08-103-3-02

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

1._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

3._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP3
 Mars, 2018

5._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

6._IMC_47 GC-08-103-3-02

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

7._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

8._IMC_47 GC-08-103-3-02

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

9._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 4
 Dapeng Zhang, 2016

10._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 10
 Dapeng Zhang, 2016

11._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 11
 Dapeng Zhang, 2016

12._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 12
 Dapeng Zhang, 2016

13._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 1 > FP
 Dapeng Zhang, 2016

14._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 3 > FP
 Dapeng Zhang, 2016

15._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 5 > FP
 Dapeng Zhang, 2016

16._IMC_47

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 6 > FP
 Dapeng Zhang, 2016

17._IMC_47

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8302 7
 Dapeng Zhang, 2016

18._IMC_47

84.6 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T1
 Dapeng Zhang, 2016

19._IMC_47 RUQ_849

71.3 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

20._IMC_47 RUQ_849

69.5 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

21._IMC_47 RUQ_849B

69 %
21 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
IMC
0.714 LCT
0.056 Nac
0.163 Sca
0.056

22._IMC_47

66.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B F401 T6
 Dapeng Zhang, 2016

23._IMC_47

64.1 %
39 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D242
 Dapeng Zhang, 2016

24._IMC_47 GC-08-103-3-2

56.3 %
80 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: Nursery, Block: -, Rep: -, Tree: 1
Notes: Brazil_Selections_Poss_grandparent/ CW
 Mars, 2018

25._IMC_47 MITC-000413

42.5 %
80 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240