SNP Profiles of NA-95   View Data

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 Key

 1234567891011121314
_Input profile
AAAATTACAGAGCTCCCCCTGGCTCCTT
1._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
2._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
3._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
4._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
5._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
6._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
7._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
8._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
9._GC-08-168-4-11
AA__ACAGAGCTCCCCCTGGCTCCTT
10._GC-08-168-4-11
AAAATTACAGAGCTCCCCCTGGCTCCTT
11._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
12._GC-01-122-6-19
AAAATTACAGAGCTCCCCCTGGCTCCTT
13._NA_95
AAAATTAC____CCCTGG_CC_
14._NA_95
AAAATTAC____CCCTGG_CC_
15._NA_95
AAAATTAC____CCCTGG_CC_
16._NA_95
AAAATTAC____CCCTGG_CC_
17._NA_95
AAAATTAC____CCCTGG_CC_
18._NA_95
AAAATTAC____CCCTGG_CC_
19._NA_95
AAAATTAC____CCCTGG_CC_
20._NA_95
AAAATTAC____CCCTGG_CC_
21._NA_95
AAAATTAC____CCCTGG_CC_
22._NA_95
AAAATTAC____CCCTGG_CC_
23._NA_95
AAAATTAC____CCCTGG_CC_
24._NA_95
AAAATTAC____CCCTGG_CC_
25._NA_95
AA__AC____CCCTGG_CC_
26._NA_95
AAAATTCC____CTTTGG_CC_
27._NA_95
AAAATTCC____CTTTGG_CC_
28._GC-08-168-4-11
AAAATTCC_GGCCCCCTTTGGTTCCCC
29._GC-01-122-6-19
AAAATTCCGGGGCCCCCTTTGGTTCCCC
30._NA_95
AACCTTAA____CCCCGG_CT_
 1516171819202122232425262728
_Input profile
AACCAAAAGGCGGGCTAGTTAGATATCG
1._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
2._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
3._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
4._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
5._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
6._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTAGATATCG
7._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
8._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT_ATATCG
9._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTTAGATATCG
10._GC-08-168-4-11
AACCAAAAGGCGGGCTAGTT_ATATCG
11._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTTAGATATCG
12._GC-01-122-6-19
AACCAAAAGGCGGGCTAGTT_ATATCG
13._NA_95
___AA__GG____ATAT_
14._NA_95
___AA__GG____ATAT_
15._NA_95
___AA__GG____ATAT_
16._NA_95
___AA__GG____ATAT_
17._NA_95
___AA__GG____ATAT_
18._NA_95
___AA__GG____ATAT_
19._NA_95
___AA__GG____ATAT_
20._NA_95
___AA__GG____ATAT_
21._NA_95
___AA__GG____ATAT_
22._NA_95
___AA__GG____ATAT_
23._NA_95
___AA__GG____ATAT_
24._NA_95
___AA__GG____ATAT_
25._NA_95
___AA__GG____ATAT_
26._NA_95
___AA__GG____TTAA_
27._NA_95
___AA__GG____TTAA_
28._GC-08-168-4-11
ATCCAAAAGGCGGGTTAATTGGTTAACC
29._GC-01-122-6-19
ATCCAAAAGGCGGGTTAATTGGTTAACC
30._NA_95
___GG__GG____TTAA_
 2930313233343536373839404142
_Input profile
GGAACTGTAGCCCCAGTTGGGTAACCAG
1._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
2._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
3._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
4._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
5._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
6._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
7._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
8._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
9._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
10._GC-08-168-4-11
GGAACTGTAGCCCCAGTTGGGTAACCAG
11._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
12._GC-01-122-6-19
GGAACTGTAGCCCCAGTTGGGTAACCAG
13._NA_95
GGAA___CC_AGTT__AA__
14._NA_95
GGAA___CC_AGTT__AA__
15._NA_95
GGAA___CC_AGTT__AA__
16._NA_95
GGAA___CC_AGTT__AA__
17._NA_95
GGAA___CC_AGTT__AA__
18._NA_95
GGAA___CC_AGTT__AA__
19._NA_95
GGAA___CC_AGTT__AA__
20._NA_95
GGAA___CC_AGTT__AA__
21._NA_95
GGAA___CC_AGTT__AA__
22._NA_95
GGAA___CC_AGTT__AA__
23._NA_95
GGAA___CC_AGTT__AA__
24._NA_95
GGAA___CC_AGTT__AA__
25._NA_95
GGAA___CC_AGTT__AA__
26._NA_95
GGAA___CC_GGGT__AA__
27._NA_95
GGAA___CC_GGGT__AA__
28._GC-08-168-4-11
GGAATTGGAGCCAAGGGTGGTTAATTAA
29._GC-01-122-6-19
GGAATTGGAGCCAAGGGTGGTTAATTAA
30._NA_95
CGAT___GG_AGGT__AA__
 4344454647484950515253545556
_Input profile
CCGTATCTAAAGAGCTCCGGAGGGTTCC
1._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
2._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
3._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
4._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
5._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
6._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
7._GC-08-168-4-11
CCGTATCTAAAG_CTCCGGAGGGTTCC
8._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
9._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGGTTCC
10._GC-08-168-4-11
CCGTATCTAAAGAGCTCCGGAGGG_CC
11._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
12._GC-01-122-6-19
CCGTATCTAAAGAGCTCCGGAGGGTTCC
13._NA_95
___CT_________CC
14._NA_95
___CT_________CC
15._NA_95
___CT_________CC
16._NA_95
___CT_________CC
17._NA_95
___CT_________CC
18._NA_95
___CT_________CC
19._NA_95
___CT_________CC
20._NA_95
___CT_________CC
21._NA_95
___CT_________CC
22._NA_95
___CT_________CC
23._NA_95
___CT_________CC
24._NA_95
___CT_________CC
25._NA_95
___CT_________CC
26._NA_95
___CC_________CT
27._NA_95
___CC_________CT
28._GC-08-168-4-11
CCTTAACCGGAGAGCTCCGGGGTTTTCT
29._GC-01-122-6-19
CCTTAACCGGAGAGCTCCGGGGTTTTCT
30._NA_95
___TT_________CC
 5758596061626364656667686970
_Input profile
CCGTAGCGCCCTACGGAGCCAATTGTGG
1._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
2._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
3._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
4._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
5._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
6._GC-01-122-6-19
CCGTAGCGCCCTACGGAGCCAATTGTGG
7._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
8._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
9._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
10._GC-08-168-4-11
CCGTAGCGCCCTACGGAGCCAATTGTGG
11._GC-01-122-6-19
CCGTAGCGCCCTACGGAG_AATTGTGG
12._GC-01-122-6-19
CCGTAGCGCCCTACGG_CCAATTGTGG
13._NA_95
CC__CG_CTACGG_CCAATTGT_
14._NA_95
CC__CG_CTACGG_CCAATTGT_
15._NA_95
CC__CG_CTACGG_CCAATTGT_
16._NA_95
CC__CG_CTACGG_CCAATTGT_
17._NA_95
CC__CG_CTACGG_CCAATTGT_
18._NA_95
CC__CG_CTACGG_CCAATTGT_
19._NA_95
CC__CG_CTACGG_CCAATTGT_
20._NA_95
CC__CG_CTACGG_CCAATTGT_
21._NA_95
CC__CG_CTACGG_CCAATTGT_
22._NA_95
CC__CG_CTACGG_CCAATTGT_
23._NA_95
CC__CG_CTACGG_CCAATTGT_
24._NA_95
CC__CG_CTACGG__AATTGT_
25._NA_95
CC__CG_CTACGG_CCAATTGT_
26._NA_95
TT__CC_CCACGG_ACAGTTGG_
27._NA_95
TT__CC_CCACGG_ACAGTTGG_
28._GC-08-168-4-11
TTGTAGCCTTCCACGGGGACAGTTGGGG
29._GC-01-122-6-19
TTGTAGCCTTCCACGGGGACAGTTGGGG
30._NA_95
CC__CC_TTAAGG_ACAAGGGG_
 7172737475767778798081828384
_Input profile
CTCCGGTTACAGACAAAACCCGCCTTAC
1._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
2._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
3._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
4._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
5._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
6._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCGCCTTAC
7._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
8._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
9._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
10._GC-08-168-4-11
CTCCGGTTACAGACAAAACCCGCCTTAC
11._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCGCCTTAC
12._GC-01-122-6-19
CTCCGGTTACAGACAAAACCCG_TTAC
13._NA_95
__GGTT_____CCCG___
14._NA_95
__GGTT_____CCCG___
15._NA_95
__GGTT_____CCCG___
16._NA_95
__GGTT_____CCCG___
17._NA_95
__GGTT_____CCCG___
18._NA_95
__GGTT_____CCCG___
19._NA_95
__GGTT_____CCCG___
20._NA_95
__GGTT_____CCCG___
21._NA_95
__GGTT_____CCCG___
22._NA_95
__GGTT_____CCCG___
23._NA_95
__GGTT_____CCCG___
24._NA_95
__GGTT_____CCCG___
25._NA_95
__GGTT_____CCCG___
26._NA_95
__GGTT_____CCGG___
27._NA_95
__GGTT_____CCGG___
28._GC-08-168-4-11
TTCCGGTTAAAAACAAAACCGGCCAAAA
29._GC-01-122-6-19
TTCCGGTTAAAAACAAAACCGGCCAAAA
30._NA_95
__AACC_____CCCC___
 8586878889909192939495   
_Input profile
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
1._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
2._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
3._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
4._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
5._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
6._GC-01-122-6-19
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
7._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
8._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
9._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
10._GC-08-168-4-11
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
11._GC-01-122-6-19
TTCTTT_AGCTCTGTTTAAGGX_XX_XX_X
12._GC-01-122-6-19
TTCTTTTTAGCTCTGTTTAAGGX_XX_XX_X
13._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
14._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
15._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
16._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
17._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
18._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
19._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
20._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
21._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
22._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
23._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
24._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
25._NA_95
TTCTTT_AG_CTGTTT__X_XX_XX_X
26._NA_95
TTCTTT_AA_CCTTTT__X_XX_XX_X
27._NA_95
TTCTTT_AA_CCTTTT__X_XX_XX_X
28._GC-08-168-4-11
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
29._GC-01-122-6-19
TTCTTTTTAATTCCTTTTAAGGX_XX_XX_X
30._NA_95
CCTTCC_AA_CCTTTT__X_XX_XX_X

Input profile: NA_95 GC-08-168-4-11

 
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Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

1._NA_95 GC-08-168-4-11

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

2._NA_95 GC-08-168-4-11

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

3._NA_95 GC-08-168-4-11

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

4._NA_95 GC-08-168-4-11

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

5._NA_95 GC-08-168-4-11

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._NA_95 GC-01-122-6-19

identical
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

7._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._NA_95 GC-08-168-4-11

identical
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

9._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

10._NA_95 GC-08-168-4-11

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

11._NA_95 GC-01-122-6-19

identical
93 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

12._NA_95 GC-01-122-6-19

identical
92 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

13._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 12
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

14._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 12
 Dapeng Zhang, 2016

15._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 11
 Dapeng Zhang, 2016

16._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 10
 Dapeng Zhang, 2016

17._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 9
 Dapeng Zhang, 2016

18._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 7
 Dapeng Zhang, 2016

19._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 6
 Dapeng Zhang, 2016

20._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 5
 Dapeng Zhang, 2016

21._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 2
 Dapeng Zhang, 2016

22._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 1
 Dapeng Zhang, 2016

23._NA_95

identical
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 1 > FP
 Dapeng Zhang, 2016

24._NA_95

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 3 > FP
 Dapeng Zhang, 2016

25._NA_95

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 4
 Dapeng Zhang, 2016

26._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8411 3
 Dapeng Zhang, 2016

27._NA_95

75 %
40 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 1619 9 > FP
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

28._NA_95 GC-08-168-4-11

70.7 %
94 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

29._NA_95 GC-01-122-6-19

70.5 %
95 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

30._NA_95

56.3 %
40 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 222
 Dapeng Zhang, 2016

 

  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240