SNP Profiles of TSA-656   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
1._TSA_656___
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
2._TSA_656___
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
3._TSA_656___
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
4._TSA_656___
ATCCCCCCAGAGCTCTCCCTAGTTTTTT
5._TSA_656___
ATCCCCCC________CCCTAG__TT__
6._TSA_656___
ATCCCCCC________CCCTAG__TT__
7._TSA_656___
ATCCCCCC________CCCTAG__TT__
8._TSA_656___
ATCCCCCC________CCCTAG__TT__
9._TSA_656___
ATCCCCCC________CCCTAG__TT__
10._TSA_656___
______CC____TT______________
11._TSA_656___
ATCCCCCC________CTCTAG__CT__
12._TSA_656___
____CCCC____TT__CC____TTTT__
13._TSA_656___
AAACCCACAGAGCTCTCTCTGGCTCTTT
14._TSA_656___
AAACCCACAGAGCTCTCTCTGGCTCTTT
15._TSA_656___
AAACCCACAGAGCTCTCTCTGGCTCTTT
16._TSA_656___
AAACCCACAGAGCTCTCTCTGGCTCTTT
17._TSA_656___
AAACCCACAGAGCTCTCTCTGGCTCTTT
18._TSA_656___
AAACCCAC________CTCTGG__CT__
19._TSA_656___
AAACCCAC________CTCTGG__CT__
20._TSA_656___
AAACCCAC________CTCTGG__CT__
21._TSA_656___
AAACCCAC________CTCTGG__CT__
22._TSA_656___
AAACCCAC________CTCTGG__CT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATAAAAGGCCCGCGCCAACTGGATAACG
1._TSA_656___
ATAAAAGGCCCGCGCCAACTGGATAACG
2._TSA_656___
ATAAAAGGCCCGCGCCAACTGGATAACG
3._TSA_656___
ATAAAAGGCCCGCGCCAACTGGATAACG
4._TSA_656___
ATAAAAGGCCCGCGCCAACTGGATAACG
5._TSA_656___
______GG____CG________ATAA__
6._TSA_656___
______GG____CG________ATAA__
7._TSA_656___
______GG____CG________ATAA__
8._TSA_656___
______GG____CG________ATAA__
9._TSA_656___
______GG____CG________ATAA__
10._TSA_656___
______GGCT__________________
11._TSA_656___
______GG____CG________ATAA__
12._TSA_656___
__________CG________GG__AACC
13._TSA_656___
AAACAAAGCGCGCGCCAACTGGATAACG
14._TSA_656___
AAACAAAGCGCGCGCCAACTGGATAACG
15._TSA_656___
AAACAAAGCGCGCGCCAACTGGATAACG
16._TSA_656___
AAACAAAGCGCGCGCCAACTGGATAACG
17._TSA_656___
AAACAAAGCGCGCGCCAACTGGATAACG
18._TSA_656___
______AG____CG________ATAA__
19._TSA_656___
______AG____CG________ATAA__
20._TSA_656___
______AG____CG________ATAA__
21._TSA_656___
______AG____CG________ATAA__
22._TSA_656___
______AG____CG________ATAA__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCATTTGTGGGGCCAAGGGTTTAGCCGG
1._TSA_656___
CCATTTGTGGGGCCAAGGGTTTAGCCGG
2._TSA_656___
CCATTTGTGGGGCCAAGGGTTTAGCCGG
3._TSA_656___
CCATTTGTGGGGCCAAGGGTTTAGCCGG
4._TSA_656___
CCATTTGTGGGGCCAAGGGTTTAGCCGG
5._TSA_656___
CCAT______GG__AAGG____AG____
6._TSA_656___
CCAT______GG__AAGG____AG____
7._TSA_656___
CCAT______GG__AAGG____AG____
8._TSA_656___
CCAT______GG__AAGG____AG____
9._TSA_656___
CCAT______GG__AAGG____AG____
10._TSA_656___
CC________GG__AA________CC__
11._TSA_656___
CCAT______GG__AAGG____AG____
12._TSA_656___
CC______GGGGCCAAGG____AACC__
13._TSA_656___
CGATTTGTGGCGACAAGGGTGTAACCAG
14._TSA_656___
CGATTTGTGGCGACAAGGGTGTAACCAG
15._TSA_656___
CGATTTGTGGCGACAAGGGTGTAACCAG
16._TSA_656___
CGATTTGTGGCGACAAGGGTGTAACCAG
17._TSA_656___
CGATTTGTGGCGACAAGGGTGTAACCAG
18._TSA_656___
CGAT______CG__AAGG____AA____
19._TSA_656___
CGAT______CG__AAGG____AA____
20._TSA_656___
CGAT______CG__AAGG____AA____
21._TSA_656___
CGAT______CG__AAGG____AA____
22._TSA_656___
CGAT______CG__AAGG____AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CGGGTTTTAGAAAACCACAGAGGGTTCT
1._TSA_656___
CGGGTTTTAGAAAACCACAGAGGGTTCT
2._TSA_656___
CGGGTTTTAGAAAACCACAGAGGGTTCT
3._TSA_656___
CGGGTTTTAGAAAACCACAGAGGGTTCT
4._TSA_656___
CGGGTTTTAGAAAACCACAGAGGGTTCT
5._TSA_656___
______TT__________________CT
6._TSA_656___
______TT__________________CT
7._TSA_656___
______TT__________________CT
8._TSA_656___
______TT__________________CT
9._TSA_656___
______TT__________________CT
10._TSA_656___
__________AA________________
11._TSA_656___
______CT__________________TT
12._TSA_656___
__GGTT____AA____________CTTT
13._TSA_656___
CCGTATCTAAAGAACTACAGAGGTTTCT
14._TSA_656___
CCGTATCTAAAGAACTACAGAGGTTTCT
15._TSA_656___
CCGTATCTAAAGAACTACAGAGGTTTCT
16._TSA_656___
CCGTATCTAAAGAACTACAGAGGTTTCT
17._TSA_656___
CCGTATCTAAAGAACTACAGAGGTTTCT
18._TSA_656___
______CT__________________CT
19._TSA_656___
______CT__________________CT
20._TSA_656___
______CT__________________CT
21._TSA_656___
______CT__________________CT
22._TSA_656___
______CT__________________CT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGCCCCCTCCCGGGACAAGTGGAG
1._TSA_656___
CCTTGGCCCCCTCCCGGGACAAGTGGAG
2._TSA_656___
CCTTGGCCCCCTCCCGGGACAAGTGGAG
3._TSA_656___
CCTTGGCCCCCTCCCGGGACAAGTGGAG
4._TSA_656___
CCTTGGCCCCCTCCCGGGACAAGTGGAG
5._TSA_656___
CC____CC__CTCCCG__ACAAGTGG__
6._TSA_656___
CC____CC__CTCCCG__ACAAGTGG__
7._TSA_656___
CC____CC__CTCCCG__ACAAGTGG__
8._TSA_656___
CC____CC__CTCCCG__ACAAGTGG__
9._TSA_656___
CC____CC__CTCCCG__ACAAGTGG__
10._TSA_656___
____GG____________ACAA__GGAG
11._TSA_656___
CC____CC__TTCCCG__ACAAGGGG__
12._TSA_656___
__TTGGCCCCTTCC__GGCCAAGGGGAG
13._TSA_656___
CTTTGGCCCTCCACCGGGACAAGTGGAA
14._TSA_656___
CTTTGGCCCTCCACCGGGACAAGTGGAA
15._TSA_656___
CTTTGGCCCTCCACCGGGACAAGTGGAA
16._TSA_656___
CTTTGGCCCTCCACCGGGACAAGTGGAA
17._TSA_656___
CTTT__CCCTCCACCGGGACAAGTGGAA
18._TSA_656___
CT____CC__CCACCG__ACAAGTGG__
19._TSA_656___
CT____CC__CCACCG__ACAAGTGG__
20._TSA_656___
CT____CC__CCACCG__ACAAGTGG__
21._TSA_656___
CT____CC__CCACCG__ACAAGTGG__
22._TSA_656___
CT____CC__CCACCG__ACAAGTGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTGGAACCACAGCCACAAAACGCCCCCT
1._TSA_656___
CTGGAACCACAGCCACAAAACGCCCCCT
2._TSA_656___
CTGGAACCACAGCCACAAAACGCCCCCT
3._TSA_656___
CTGGAACCACAGCCACAAAACGCCCCCT
4._TSA_656___
CTGGAACCACAGCCACAAAACGCCCCCT
5._TSA_656___
____AACC__________AACG____CT
6._TSA_656___
____AACC__________AACG____CT
7._TSA_656___
____AACC__________AACG____CT
8._TSA_656___
____AACC__________AACG____CT
9._TSA_656___
____AACC__________AACG____CT
10._TSA_656___
____AG____________AACG__CC__
11._TSA_656___
____AGCC__________AACG____CT
12._TSA_656___
__________________AACG__CCCT
13._TSA_656___
TTCCAGCTACAGCCACAGACCCCCCCTT
14._TSA_656___
TTCCAGCTACAGCCACAGACCCCCCCTT
15._TSA_656___
TTCCAGCTACAGCCACAGACCCCCCCTT
16._TSA_656___
TTCCAGCTACAGCCACAGACCCCCCCTT
17._TSA_656___
TTCCAGCTACAGCCACAGACCCCCCCTT
18._TSA_656___
____AGCT__________ACCC____TT
19._TSA_656___
____AGCT__________ACCC____TT
20._TSA_656___
____AGCT__________ACCC____TT
21._TSA_656___
____AGCT__________ACCC____TT
22._TSA_656___
____AGCT__________ACCC____TT
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
1._TSA_656___
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
2._TSA_656___
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
3._TSA_656___
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
4._TSA_656___
CTCCCCAGCCCTGTCTTTGGX_XX_XX_XX_X
5._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
6._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
7._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
8._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
9._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
10._TSA_656___
__CC____CC__GT______X_XX_XX_XX_X
11._TSA_656___
CTCC__AG__CTGTCT____X_XX_XX_XX_X
12._TSA_656___
______AGCCCTGT______X_XX_XX_XX_X
13._TSA_656___
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
14._TSA_656___
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
15._TSA_656___
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
16._TSA_656___
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
17._TSA_656___
CTCTCTAGCTCCGTCTTTAGX_XX_XX_XX_X
18._TSA_656___
CTCT__AG__CCGTCT____X_XX_XX_XX_X
19._TSA_656___
CTCT__AG__CCGTCT____X_XX_XX_XX_X
20._TSA_656___
CTCT__AG__CCGTCT____X_XX_XX_XX_X
21._TSA_656___
CTCT__AG__CCGTCT____X_XX_XX_XX_X
22._TSA_656___
CTCT__AG__CCGTCT____X_XX_XX_XX_X

Input profile: TSA_656 GC-08-257-8-25

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

1._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

2._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

3._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

4._TSA_656 GC-08-257-8-25

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

5._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 10
 Dapeng Zhang, 2016

6._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 6
 Dapeng Zhang, 2016

7._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 3
 Dapeng Zhang, 2016

8._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 2
 Dapeng Zhang, 2016

9._TSA_656

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 1
 Dapeng Zhang, 2016

10._TSA_656 RUQ_1016

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._TSA_656 RUQ_1016

91.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

12._TSA_656 RUQ_1016

90.7 %
43 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

13._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

14._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

15._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

16._TSA_656 GC-08-257-8-25

76.6 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

17._TSA_656 GC-08-257-8-25

76.3 %
93 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 8
 Dapeng Zhang, 2016

19._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

20._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 9
 Dapeng Zhang, 2016

21._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 7
 Dapeng Zhang, 2016

22._TSA_656

73.8 %
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8825 4
 Dapeng Zhang, 2016

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240