SNP Profiles of LAF-1   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACCCCAAAGCTCCCTCTGGCTCCCT
1._LF_1___
AAAACCCCAAAGCTCCCTCTGGCTCCCT
2._LF_1___
AAAACCCCAAAGCTCCCTCTGGCTCCCT
3._LF_1___
AAAACCCCAAAGCTCCCTCTGGCTCCCT
4._LF_1___
AAAACCCC________CTCTGG__CC__
5._LF_1___
AAAACCCC________CTCTGG__CC__
6._LF_1___
AAAACCCC________CTCTGG__CC__
7._LF_1___
AAAACCCC________CTCTGG__CC__
8._LF_1___
AAAACCCC________CTCTGG__CC__
9._LF_1___
____CCCC____CC__CT____CT____
10._LF_1___
______CC____CC______________
11._LF_1___
AAAA__CCAAAG__GGAG__GGAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGAATTGG
1._LF_1___
ATCCAAAAGGCGGGCTAGTTAGAATTGG
2._LF_1___
ATCCAAAAGGCGGGCTAGTTAGAATTGG
3._LF_1___
ATCCAAAAGGCGGGCTAGTTAGAATTGG
4._LF_1___
______AA____GG________AATT__
5._LF_1___
______AA____GG________AATT__
6._LF_1___
______AA____GG________AATT__
7._LF_1___
______AA____GG________AATT__
8._LF_1___
______AA____GG________AATT__
9._LF_1___
__________CG________AG__TTGG
10._LF_1___
______AATT__________________
11._LF_1___
ATCCAAAACC__GGAGAAAAAGAATTCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCAACCTTAGCCACAGGTGGGTGGCCAA
1._LF_1___
CCAACCTTAGCCACAGGTGGGTGGCCAA
2._LF_1___
CCAACCTTAGCCACAGGTGGGTGGCCAA
3._LF_1___
CCAACCTTAGCCACAGGTGGGTGGCCAA
4._LF_1___
CCAA______CC__AGGT____GG____
5._LF_1___
CCAA______CC__AGGT____GG____
6._LF_1___
CCAA______CC__AGGT____GG____
7._LF_1___
CCAA______CC__AGGT____GG____
8._LF_1___
CCAA______CC__AGGT____GG____
9._LF_1___
CC______AG__ACAGGT____GG____
10._LF_1___
CC________CC__AG________CC__
11._LF_1___
GGAAGGAAAGCCACAGACCCACGGGGAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCGGAAGGTTCCGGGGGGTTCT
1._LF_1___
CCTTAACCGGAAGGTTCCGGGGGGTTCT
2._LF_1___
CCTTAACCGGAAGGTTCCGGGGGGTTCT
3._LF_1___
CCTTAACCGGAAGGTTCCGGGGGGTTCT
4._LF_1___
______CC__________________CT
5._LF_1___
______CC__________________CT
6._LF_1___
______CC__________________CT
7._LF_1___
______CC__________________CT
8._LF_1___
______CC__________________CT
9._LF_1___
__TTAA____AA____________CTCT
10._LF_1___
__________AA________________
11._LF_1___
GGAA__GG__AAAGAA__GGGGCCAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGTAGGGCCTTCCGGAGAAGGGGTTAA
1._LF_1___
CCGTAGGGCCTTCCGGAGAAGGGGTTAA
2._LF_1___
CCGTAGGGCCTTCCGGAGAAGGGGTTAA
3._LF_1___
CCGTAGGGCCTTCCGGAGAAGGGGTTAA
4._LF_1___
CC____GG__TTCCGG__AAGGGGTT__
5._LF_1___
CC____GG__TTCCGG__AAGGGGTT__
6._LF_1___
CC____GG__TTCCGG__AAGGGGTT__
7._LF_1___
CC____GG__TTCCGG__AAGGGGTT__
8._LF_1___
CC____GG__TTCCGG__AAGGGGTT__
9._LF_1___
__GT__GGCCTTCC__AGAAGGGGTTAA
10._LF_1___
____AG____________AAGG__TTAA
11._LF_1___
GGACAGCCGGAACCGGAGAAGGCCAAAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCCCTTACAGAAAAGGCCCCTTATACCT
1._LF_1___
CCCCTTACAGAAAAGGCCCCTTATACCT
2._LF_1___
CCCCTTACAGAAAAGGCCCCTTATACCT
3._LF_1___
CCCCTTACAGAAAAGGCCCCTTATACCT
4._LF_1___
____TT__________CCCC______CT
5._LF_1___
____TT__________CCCC______CT
6._LF_1___
____TT__________CCCC______CT
7._LF_1___
____TT__________CCCC______CT
8._LF_1___
____TT__________CCCC______CT
9._LF_1___
________________CCCC____ACCT
10._LF_1___
________________ACCC____AC__
11._LF_1___
____AAACAGAAAA__CC__AAATACAG
 85 86 87 88 89 90 91 92 93 94     
_Input profile
CTCCTTGGCCTTGGTTTTGGX_XX_XX_XX_X
1._LF_1___
CTCCTTGGCCTTGGTTTTGGX_XX_XX_XX_X
2._LF_1___
CTCCTTGGCCTTGGTTTTGGX_XX_XX_XX_X
3._LF_1___
CTCCTTGGCCTTGGTTTTGGX_XX_XX_XX_X
4._LF_1___
CTCC__GG__TTGGTT____X_XX_XX_XX_X
5._LF_1___
CTCC__GG__TTGGTT____X_XX_XX_XX_X
6._LF_1___
CTCC__GG__TTGGTT____X_XX_XX_XX_X
7._LF_1___
CTCC__GG__TTGGTT____X_XX_XX_XX_X
8._LF_1___
CTCC__GG__TTGGTT____X_XX_XX_XX_X
9._LF_1___
______GGCCTT________X_XX_XX_XX_X
10._LF_1___
__CC____CC__GG______X_XX_XX_XX_X
11._LF_1___
AG__AA____AA__AAAAGGX_XX_XX_XX_X

Input profile: LF_1 GC-08-285-8-57

 
Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

1._LF_1 GC-08-285-8-57

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

2._LF_1 GC-08-285-8-57

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._LF_1 GC-08-285-8-57

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

4._LF_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 8
 Dapeng Zhang, 2016

5._LF_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 7
 Dapeng Zhang, 2016

6._LF_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 4
 Dapeng Zhang, 2016

7._LF_1

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8857 2
 Dapeng Zhang, 2016

8._LF_1

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0298
 Dapeng Zhang, 2016

9._LF_1 RUQ_17

97.4 %
38 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

10._LF_1 RUQ_17

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

11._LF_1 RUQ_17

50.6 %
79 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP999 90TcSNP242
91TcSNP1253 92TcSNP1414 93TcSNP154 94TcSNP240