SNP Profiles matching SCA-19

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CCCCGGCCAAGGGGCCTTAAGGAGGGAA
1._SCA_11___
CCCCGGCCAAGGGGCCATAAGGAGGGAA
2._SCA_12___
CCCCGGCCAAGGGGCCATAAGGAGGGAA
3._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
4._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
5._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
6._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
7._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
8._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
9._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
10._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
11._SCA_6___
CCCCGGCCAAAGGGCCATAAGGAGGGAA
12._SCA_3___
CCCCGGCCAAGGGGCCATAAGGGGGGAA
13._U_12_[PER]___
CCCCGGCCAAGGGGCCAAAAGGGGGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAAGCCAAGGGGACAAGGAGCCAA
1._SCA_11___
AACCAAAGCCAAGGGGAAAAGGAGCCAA
2._SCA_12___
AACCAAAGCCAAGGGGAAAAGGAGCCAA
3._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
4._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
5._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
6._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
7._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
8._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
9._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
10._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
11._SCA_6___
AACCAGGGCCAAGGGGACAGGGAGCCAA
12._SCA_3___
AAACAAGGCCAAGGGGACAGGGAACCAA
13._U_12_[PER]___
AAAAAAGGCCGGGGGGACAAGGGGCCAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGAAGGCCGGAAGGAGCGAAAAAAAAGG
1._SCA_11___
GGAAGGCCGGAAGGAACGAAATAAAGGG
2._SCA_12___
GGAAGGCCGGAAGGAACGAAATAAAGGG
3._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
4._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
5._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
6._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
7._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
8._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
9._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
10._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
11._SCA_6___
GGAAGGCCGGAAAGAGCCAAATAAAAGG
12._SCA_3___
GGAAGGCCCGAAAGAGCGAAAAAAAAGG
13._U_12_[PER]___
GGAAGGCCGGAAGGAGGGAAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAGGAAAAAGAACCGGAAAAAACCGGCC
1._SCA_11___
AAGGAGAGAGAACCGGAAAAAACCGGCG
2._SCA_12___
AAGGAGAGAGAACCGGAAAAAACCGGCG
3._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
4._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
5._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
6._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
7._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
8._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
9._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
10._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
11._SCA_6___
AAGGAAAGAGAACCGGAAAAAACCGGCG
12._SCA_3___
AAGGAAAGAAAACCGGACAAAACCGGCC
13._U_12_[PER]___
AAGGAAAAAGAACCGGCCACAGCCGGCG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCGGGGAAAAAACCAAAAAACCAACCGG
1._SCA_11___
CCGGGGAAAAAACCAAAAAACCAACCGG
2._SCA_12___
CCGGGGAAAAAACCAAAAAACCAACCGG
3._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
4._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
5._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
6._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
7._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
8._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
9._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
10._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
11._SCA_6___
CCGGGGAAAAAACCAAAAAACCAACCGG
12._SCA_3___
CCGGGGAAAAAACCAAAAAACCAACCGG
13._U_12_[PER]___
CCGGGGAAAAAACCAAAAAACCAACCGG
 71 72 73 74 75 76 77 78 79 80 81 82   
_Input profile
AAGGAACGGGCCAGCCGGTTGGAAX_XX_X
1._SCA_11___
AAGGAAGGAGCCAGCCGGTTGGAAX_XX_X
2._SCA_12___
AAGGAAGGAGCCAGCCGGTTGGAAX_XX_X
3._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
4._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
5._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
6._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
7._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
8._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
9._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
10._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
11._SCA_6___
AAGGAACGGGCCGGCCGGTTGGAAX_XX_X
12._SCA_3___
AAGGAAGGAGCCAGCCGGTTGGAAX_XX_X
13._U_12_[PER]___
AAGGAAGGGGCCAGCCGGTTGGAAX_XX_X

Input profile: SCA_19 GC-03-4-1-4

 
Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 1, Rep: 4, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

1._SCA_11 RUQ_1686

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

2._SCA_12 RUQ_1689

93.9 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

3._SCA_6 RUQ_234

93.3 %
82 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

4._SCA_6 MITC-000344

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

5._SCA_6 MITC-000345

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

6._SCA_6 MITC-000347

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

7._SCA_6 MITC-000348

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

8._SCA_6 MITC-000349

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

9._SCA_6 MITC-000343

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

10._SCA_6 MITC-000376

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

11._SCA_6 MITC-000452

93.3 %
82 shared markers

USDA-SHRS, United States of America
 Mars, 2018

12._SCA_3 GC-01-123-6-20

92.1 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 20, Tree: 2 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

13._U_12_[PER] GC-02-4-1-4

90.2 %
82 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 4, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1Tcm001s00947643 2Tcm003s01336581 3Tcm003s07402719 4Tcm006s26664133 5TcSNP1034
6TcSNP1060 7TcSNP1062 8TcSNP1063 9TcSNP1075 10TcSNP1096
11TcSNP1111 12TcSNP1149 13TcSNP1156 14TcSNP1175 15TcSNP122
16TcSNP1253 17TcSNP1270 18TcSNP1309 19TcSNP1350 20TcSNP1383
21TcSNP1414 22TcSNP1439 23TcSNP144 24TcSNP1442 25TcSNP1458
26TcSNP1484 27TcSNP150 28TcSNP151 29TcSNP1520 30TcSNP154
31TcSNP174 32TcSNP193 33TcSNP226 34TcSNP230 35TcSNP240
36TcSNP242 37TcSNP25 38TcSNP28 39TcSNP316 40TcSNP32
41TcSNP329 42TcSNP364 43TcSNP372 44TcSNP413 45TcSNP418
46TcSNP42 47TcSNP429 48TcSNP430 49TcSNP448 50TcSNP497
51TcSNP521 52TcSNP529 53TcSNP547 54TcSNP560 55TcSNP561
56TcSNP577 57TcSNP591 58TcSNP60 59TcSNP602 60TcSNP619
61TcSNP653 62TcSNP689 63TcSNP723 64TcSNP731 65TcSNP75
66TcSNP751 67TcSNP776 68TcSNP799 69TcSNP823 70TcSNP836
71TcSNP860 72TcSNP872 73TcSNP891 74TcSNP894 75TcSNP899
76TcSNP90 77TcSNP917 78TcSNP929 79TcSNP944 80TcSNP953
81TcSNP994 82TcSNP998