SNP Profiles matching LCT EEN 163/A

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTCCAAGGTTAACCCCGGCCAAAGTTCC
1._AMAZ_11___
CTCCAAGGTTAACCCCGGCCAAAGTTCC
2._LCT_EEN_232___
____AAGGTT__CC__GGCC____TT__
3._LCT_EEN_52___
____AAGGTT__CC__GGCC____TT__
4._LCT_EEN_163_/D___
__CCACGGTTAACCCCAGCCAAAGTTCC
5._LCT_EEN_107___
____AAGGTT__CC__GGCC____TT__
6._LCT_EEN_109_/S-102___
____AAGGTT__CC__GGCC____TT__
7._LCT_EEN_163_/D___
____ACGGTT__CC__AGCC____TT__
8._LCT_EEN_223___
____AAGGTT__CC__GGCC____TT__
9._LCT_EEN_283___
____AAGGTT__CC__GGCC____TT__
10._LCT_EEN_44_/S-9___
____AAGGTT__CC__GGCC____TT__
11._LCT_EEN_49___
____ACGGTT__CC__GGCC____TT__
12._LCT_EEN_65___
____AAGGTT__CC__GGCC____TT__
13._LCT_EEN_142___
____AAGGTT__CC__GGCC____TT__
14._LCT_EEN_221___
____AAGGTT__CC__GGCC____TT__
15._LCT_EEN_146___
____AAGGTT__CC__GGCC____TT__
16._LCT_EEN_227___
____AAGGTT__CC__GGCC____TT__
17._LCT_EEN_217___
____AAGGTT__CC__GGCC____TT__
18._LCT_EEN_231___
____AAGGTT__CC__GGCC____TT__
19._LCT_EEN_282___
____AAGGTT__CC__GGCC____TT__
20._LCT_EEN_282___
____AAGGTT__CC__GGCC____TT__
21._LCT_EEN_327___
____AAGGTT__CC__GGCC____TT__
22._LCT_EEN_378___
____AAGGTT__CC__GGCC____TT__
23._COCA_3308_/1_[CHA]___
CCCCACGGTTAACC__GGCCAAGGTTCC
24._NAPO_25_[CHA]___
__CCACGGTTAACC__GGCCAGAATTCC
25._LCT_EEN_121___
____AAGGTT__CC__GGCC____TT__
26._LCT_EEN_141___
____AAGGTT__CC__GGCC____TT__
27._LCT_EEN_220___
____AAGGTT__CC__GGCC____TT__
28._LCT_EEN_32___
____AAGGTT__CC__AGCC____TT__
29._LCT_EEN_37___
____ACGGTT__CC__GGCC____TT__
30._LCT_EEN_38___
____AAGGTT__CC__GGCC____TT__
31._LCT_EEN_46___
______GGTT__CCCCAGCC____AT__
32._LCT_EEN_218___
____AAGGTT__CC__GGCC____TT__
33._LCT_EEN_219___
____AAGGTT__CC__GGCC____TT__
34._LCT_EEN_376___
____CCGGTT__CC__GGCC____TT__
35._LCT_EEN_379___
____CCGGTT__CC__GGCC____TT__
36._LCT_EEN_57___
____ACGGTT__CC__GGCC____TT__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCGGGGCCCCTTCCTTAATTCCCC
1._AMAZ_11___
GGAACCGGGGCCCCTTCCTTAATTCCCC
2._LCT_EEN_232___
GGACCCGGGGCC__TT__TT______CC
3._LCT_EEN_52___
GGAACCGGGGCC__TT__GT______CC
4._LCT_EEN_163_/D___
GGAACCGGGGCCCCTTCCTTAATTCCCC
5._LCT_EEN_107___
GGACCCGGCGCC__TT__TT______CC
6._LCT_EEN_109_/S-102___
GGAACCGGCGCC__TT__GT______CC
7._LCT_EEN_163_/D___
GGAACCGGGGCC__TT__TT______CC
8._LCT_EEN_223___
GGAACCGGGGCC__TT__GG______CC
9._LCT_EEN_283___
GGACCCGGGGCC__TT__GT______CC
10._LCT_EEN_44_/S-9___
GGAACCGGGGCC__TT__GT______CC
11._LCT_EEN_49___
GGAACCGGGGCC__TT__GT______CC
12._LCT_EEN_65___
GGACCCGGGGCC__TT__GT______CC
13._LCT_EEN_142___
GGAACCGGGGCC__TT__GT______CC
14._LCT_EEN_221___
GGAACCGGGGCC__TT__GG______CC
15._LCT_EEN_146___
GGACCCGGGGCC__TT__GG______CC
16._LCT_EEN_227___
GGAACCGGGGCC__TT__GG______CC
17._LCT_EEN_217___
GGAACCGGCGCC__TT__GG______CC
18._LCT_EEN_231___
GGAACCGGGGCC__TT__GG______CC
19._LCT_EEN_282___
GGACCCGGGGCC__TT__GG______CC
20._LCT_EEN_282___
GGACCCGGGGCC__TT__GG______CC
21._LCT_EEN_327___
GGACCCGGGGCC__TT__GG______CC
22._LCT_EEN_378___
GGACCCGGGGCC__TT__GG______CC
23._COCA_3308_/1_[CHA]___
GGAACCGGGGCCCCTTCCGTAATTCCCC
24._NAPO_25_[CHA]___
GGAACCGGGGCCCCTTCCGGAATTCCCC
25._LCT_EEN_121___
GGACCCGGCGCC__TT__GG______CC
26._LCT_EEN_141___
GGACCCGGGGCC__TT__GG______CC
27._LCT_EEN_220___
GGAACCGGGGCC__TT__GG______CC
28._LCT_EEN_32___
GGAACCGGGGCC__CT__TT______CC
29._LCT_EEN_37___
GGAACCGGGGCC__TT__GT______CC
30._LCT_EEN_38___
GGACCCGGGGCC__TT__GG______CC
31._LCT_EEN_46___
AGAACCGGGGCC__TT__GT______CC
32._LCT_EEN_218___
GGAACCGGGGCC__TT__GG______CC
33._LCT_EEN_219___
GGACCCGGGGCC__TT__GT______CC
34._LCT_EEN_376___
GGAACCGGGGCC__TT__GG______CC
35._LCT_EEN_379___
GGAACCGGGGCC__TT__GG______CC
36._LCT_EEN_57___
GGACCCGGGGCC__TT__GG______CC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCTTGGAACCCCGGGGTTGGCCCCTTCC
1._AMAZ_11___
CCTT__AACCCCGGGGTTGGCCCCTTCC
2._LCT_EEN_232___
CCTT__AA__CC______GG____TTCC
3._LCT_EEN_52___
CCTT__AA__CC______GG____TTCC
4._LCT_EEN_163_/D___
CCTT__AACCCCGGGGTTGGCTCCTTCC
5._LCT_EEN_107___
CCTT__AA__CC______GG____TTCC
6._LCT_EEN_109_/S-102___
CCTT__AA__CC______GG____TTCC
7._LCT_EEN_163_/D___
CCTT__AA__CC______GG____TTCC
8._LCT_EEN_223___
CCTT__AA__CC______GG____TTCC
9._LCT_EEN_283___
CCTT__AA__CC______GG____TTCC
10._LCT_EEN_44_/S-9___
CGTT__AA__CC______GG____TTCC
11._LCT_EEN_49___
CCTT__AA__CC______GG____TTCC
12._LCT_EEN_65___
CCTT__AA__CC______GG____TTCC
13._LCT_EEN_142___
__TT__AA__CC______GG____CTCC
14._LCT_EEN_221___
__TT__AA__CC______GG____TTCC
15._LCT_EEN_146___
CCTT__AA__CC______GG____TTCC
16._LCT_EEN_227___
CCTT__AA__CC______GG____CTCC
17._LCT_EEN_217___
__TT__AA__CC______GG____TTCC
18._LCT_EEN_231___
__TT__AA__CC______GG____CTCC
19._LCT_EEN_282___
__TT__AA__CC______GG____TTCC
20._LCT_EEN_282___
__TT__AA__CC______GG____TTCC
21._LCT_EEN_327___
__TT__AA__CC______GG____TTCC
22._LCT_EEN_378___
__TT__AA__CC______GG____TTCC
23._COCA_3308_/1_[CHA]___
GGTT__AACCCCGGGGTTGGCCCCTTCC
24._NAPO_25_[CHA]___
CCTT__AACCCCGGGGTTGGCCCCCTCC
25._LCT_EEN_121___
CCTT__AA__CC______GG____TTCC
26._LCT_EEN_141___
CCTT__AA__CC______GG____CTCC
27._LCT_EEN_220___
CGTT__AA__CC______GG____CTCC
28._LCT_EEN_32___
GGTT__AA__CC______GG____TTCC
29._LCT_EEN_37___
GGTT__AA__CC______GG____TTCC
30._LCT_EEN_38___
CCTT__AA__CC______GG____CTCC
31._LCT_EEN_46___
__TT__AA__CC______GG____TTCC
32._LCT_EEN_218___
GGTT__AA__CC______GG____TTCC
33._LCT_EEN_219___
__TT__AA__CC______GG____CCCC
34._LCT_EEN_376___
CCTT__AA__CC______GG____TTCC
35._LCT_EEN_379___
CCTT__AA__CC______GG____TTCC
36._LCT_EEN_57___
CCTT__AA__CC______GG____TTCC
 43              
_Input profile
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._AMAZ_11___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._LCT_EEN_232___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LCT_EEN_52___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._LCT_EEN_163_/D___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._LCT_EEN_107___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._LCT_EEN_109_/S-102___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._LCT_EEN_163_/D___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._LCT_EEN_223___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._LCT_EEN_283___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._LCT_EEN_44_/S-9___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._LCT_EEN_49___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._LCT_EEN_65___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._LCT_EEN_142___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._LCT_EEN_221___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._LCT_EEN_146___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._LCT_EEN_227___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._LCT_EEN_217___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._LCT_EEN_231___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._LCT_EEN_282___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._LCT_EEN_282___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._LCT_EEN_327___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._LCT_EEN_378___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._COCA_3308_/1_[CHA]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._NAPO_25_[CHA]___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._LCT_EEN_121___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._LCT_EEN_141___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._LCT_EEN_220___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._LCT_EEN_32___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._LCT_EEN_37___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._LCT_EEN_38___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._LCT_EEN_46___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._LCT_EEN_218___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._LCT_EEN_219___
GGX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._LCT_EEN_376___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._LCT_EEN_379___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._LCT_EEN_57___
__X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_163_/A RUQ_178

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

1._AMAZ_11 RUQ_1600

identical
42 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_232

97.9 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

3._LCT_EEN_52

97.9 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

4._LCT_EEN_163_/D RUQ_180

96.3 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._LCT_EEN_107

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

6._LCT_EEN_109_/S-102

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 137 T1
 Dapeng Zhang, 2014

7._LCT_EEN_163_/D

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

8._LCT_EEN_223

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

9._LCT_EEN_283

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 18 T1
 Dapeng Zhang, 2014

10._LCT_EEN_44_/S-9

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 146 T2
 Dapeng Zhang, 2014

11._LCT_EEN_49

95.8 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

12._LCT_EEN_65

95.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

13._LCT_EEN_142

95.7 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

14._LCT_EEN_221

95.5 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

15._LCT_EEN_146

93.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

16._LCT_EEN_227

93.8 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

17._LCT_EEN_217

93.5 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

18._LCT_EEN_231

93.5 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

19._LCT_EEN_282

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

20._LCT_EEN_282

93.5 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

21._LCT_EEN_327

93.2 %
22 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 61 T1
 Dapeng Zhang, 2014

22._LCT_EEN_378

93.2 %
22 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

23._COCA_3308_/1_[CHA] RUQ_102

92.7 %
41 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

24._NAPO_25_[CHA] RUQ_1547

92.5 %
40 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

25._LCT_EEN_121

91.7 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

26._LCT_EEN_141

91.7 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

27._LCT_EEN_220

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

28._LCT_EEN_32

91.7 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

29._LCT_EEN_37

91.7 %
24 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

30._LCT_EEN_38

91.7 %
24 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

31._LCT_EEN_46

91.3 %
23 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3312 4 > FP
 Dapeng Zhang, 2016

32._LCT_EEN_218

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

33._LCT_EEN_219

91.3 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

34._LCT_EEN_376

91.3 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

35._LCT_EEN_379

91.3 %
23 shared markers

 View  Any
International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

36._LCT_EEN_57

91.3 %
23 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Barbados
 Dapeng Zhang, 2014

 

  Key to SNP Markers

1TcSNP75 2TcSNP90 3TcSNP144 4TcSNP150 5TcSNP151
6TcSNP174 7TcSNP193 8TcSNP226 9TcSNP230 10TcSNP242
11TcSNP329 12TcSNP364 13TcSNP372 14TcSNP448 15TcSNP469
16TcSNP529 17TcSNP534 18TcSNP560 19TcSNP577 20TcSNP591
21TcSNP602 22TcSNP619 23TcSNP702 24TcSNP723 25TcSNP731
26TcSNP799 27TcSNP823 28TcSNP872 29TcSNP878 30TcSNP891
31TcSNP899 32TcSNP998 33TcSNP999 34TcSNP1060 35TcSNP1063
36TcSNP1111 37TcSNP1126 38TcSNP1253 39TcSNP1309 40TcSNP1439
41TcSNP1442 42TcSNP1458 43TcSNP1484