SNP Profiles of CCN 51   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._CCN 51___
______GGGGTT___GG______CTTTACCT___
2._CCN 51___
______GGGGTT___GG______CT___ACCT___
3._CCN 51___
______GGGGTT___GG______CTTTACCT___
4._CCN 51___
______GGGGTT___GG______CTTTACCT___
5._CCN 51___
______GGGGTT___GG______CTTTACCT___
6._CCN 51___
______GGGGTT___GG______CTTTACCT___
7._CCN 51___
______GGGGTT___GG______CTTTACCT___
8._CCN 51___
______GGGGTT___GG______CTTTACCT___
9._CCN 51___
______GGCCTT___GG______AGAAACAG___
10._CCN 51___
______GG___TT___________________________
11._CCN 51___
______GG___TT___________________________
12._CCN 51___
______GG___TT___________________________
13._CCN 51___
______GG___TT___________________________
14._CCN 51___
______GG___TT___________________________
15._CCN 51___
______GG___TT___________________________
16._CCN 51___
______GG___TT___________________________
17._CCN 51___
______GG___AA___________________________
18._CCN 51___
______GG___TT___________________________
19._CCN 51___
CTCC_________CT___ACGG____________GT
20._CCN 51___
CTCC_________CT___ACGG____________GT
21._CCN 51___
CTCC_________CT___ACGG____________GT
22._CCN 51___
CTCC_________CT___ACGG____________GT
23._CCN 51___
______GGCCTT___GG______AGAAACAG___
24._CCN 51___
______GGCCTT___GG______AGAAACAG___
25._CCN 51___
______GG___TT___________________________
26._CCN 51___
______GG___TT___________________________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._CCN 51___
___ACTTCC___AG______AA___CGAA___CT
2._CCN 51___
___ACTTCC___AG______AA___CGAA___CT
3._CCN 51___
___ACTTCC___AG______AA___CGAA___CT
4._CCN 51___
___ACTTCC___AG______AA______AA___CT
5._CCN 51___
___ACTTCCATAG______AA___CGAAGGCT
6._CCN 51___
___ACTTCCATAG______AA___CGAAGGCT
7._CCN 51___
___ACTTCCATAG______AA___CGAAGGCT
8._CCN 51___
___ACTTCCATAG______AA___CGAAGGCT
9._CCN 51___
___ACAAGGATAG______AA___CGAAGGAG
10._CCN 51___
___ACTTCC____________AA___CGAA___CT
11._CCN 51___
___ACTTCC____________AA___CGAA___CT
12._CCN 51___
___ACTTCC____________AA___CGAA___CT
13._CCN 51___
___ACTTCC____________AA___CGAA___CT
14._CCN 51___
___ACTTCC____________AA___CGAA___CT
15._CCN 51___
___ACTTCC____________AA___CGAA___CT
16._CCN 51___
___ACTTCC____________AA___CGAA___CT
17._CCN 51___
___AAGGTT____________CC___GGGG___TT
18._CCN 51___
___ACTTCC____________AA___CGAA___CT
19._CCN 51___
ATAC____________CTAG___GT___AA______
20._CCN 51___
ATAC____________CTAG___GT___AA______
21._CCN 51___
ATAC____________CTAG___GT___AA______
22._CCN 51___
ATAC____________CTAG___GT___AA______
23._CCN 51___
___ACAAGGATAG______AA___CGAAGGAG
24._CCN 51___
___ACAAGGATAG______AA___CGAAGGAG
25._CCN 51___
___ACTTCC____________AA___CGAA___CT
26._CCN 51___
___ACTTCC____________AA___CGAA___CT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._CCN 51___
______AAAG___AGAACTAG___GG___CCAG
2._CCN 51___
______AAAG___AGAACTAG___GG___CCAG
3._CCN 51___
______AAAG___AGAACT______GGAACCAG
4._CCN 51___
______AAAG___AGAACTAG___GGAACCAG
5._CCN 51___
______AAAG___AGAACTAG___GGAACCAG
6._CCN 51___
______AAAG___AGAACTAG___GGAACCAG
7._CCN 51___
______AAAG___AGAACTAG___GGAACCAG
8._CCN 51___
______AAAG___AGAACTAG___GGAACCAG
9._CCN 51___
______TTAG___AGAAAGAG___GGAAGG___
10._CCN 51___
__________________AA_________GG______AG
11._CCN 51___
__________________AA_________GG______AG
12._CCN 51___
__________________AA_________GG______AG
13._CCN 51___
__________________AA_________GG______AG
14._CCN 51___
__________________AA_________GG______AG
15._CCN 51___
__________________AA_________GG______AG
16._CCN 51___
__________________AA_________GG______AG
17._CCN 51___
__________________TT_________GG______GG
18._CCN 51___
__________________AA_________GG______AG
19._CCN 51___
TTCC___AGCC____________CT____________
20._CCN 51___
TTCC___AGCC____________CT____________
21._CCN 51___
TTCC___AGCC____________CT____________
22._CCN 51___
TTCC___AGCC____________CT____________
23._CCN 51___
______TTAG___AGAAAGAG___GGAAGG___
24._CCN 51___
______TTAG___AGAAAGAG___GGAAGG___
25._CCN 51___
__________________AA_________GG______AG
26._CCN 51___
__________________AA_________GG______AG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._CCN 51___
CT___AC___ACCT___AGTTAGCC___CCCC
2._CCN 51___
CT___AC___ACCT___AGTTAGCC___CCCC
3._CCN 51___
CT___AC___ACCT___AGTTAGCC______CC
4._CCN 51___
CT___AC___ACCT___AGTTAGCC___CCCC
5._CCN 51___
______AC___ACCT___AGTTAGCC___CCCC
6._CCN 51___
______AC___ACCT___AGTTAGCC___CCCC
7._CCN 51___
______AC___ACCT___AGTTAGCC___CCCC
8._CCN 51___
______AC___ACCT___AGTTAGCC___CCCC
9._CCN 51___
AG___AC___AC______AGAAAGCC___CCGG
10._CCN 51___
____________ACCT______TT___CC___CC___
11._CCN 51___
____________ACCT______TT___CC___CC___
12._CCN 51___
____________ACCT______TT___CC___CC___
13._CCN 51___
____________ACCT______TT___CC___CC___
14._CCN 51___
____________ACCT______TT___CC___CC___
15._CCN 51___
____________ACCT______TT___CC___CC___
16._CCN 51___
____________ACCT______TT___CC_________
17._CCN 51___
____________CCCC______GG___CC___CC___
18._CCN 51___
____________ACCT______TT___CC___CC___
19._CCN 51___
___AA___CCAA___AA_________CCAACCCC
20._CCN 51___
___AA___CCAA___AA_________CCAACCCC
21._CCN 51___
___AA___CC______AA_________CCAACCCC
22._CCN 51___
___AA___CCAA___AA_________CCAACCCC
23._CCN 51___
AG___AC___AC______AGAAAGCC___CCGG
24._CCN 51___
AG___AC___AC______AGAAAGCC___CCGG
25._CCN 51___
____________ACCT______TT___CC___CC___
26._CCN 51___
____________ACCT______TT___CC___CC___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._CCN 51___
GGCT_________AGAA___AG___CCGGGG___
2._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
3._CCN 51___
GGCT_________AGAA___AGTT___GGGG___
4._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
5._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
6._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
7._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
8._CCN 51___
GGCT_________AGAA___AGTTCCGGGG___
9._CCN 51___
___AG____________AG___AA______CCGG___
10._CCN 51___
___CT_________AG_______________GG______
11._CCN 51___
___CT_________AG_______________GG______
12._CCN 51___
___CT_________AG_______________GG______
13._CCN 51___
___CT_________AG_______________GG______
14._CCN 51___
___CT_________AG_______________GG______
15._CCN 51___
___CT_________AG_______________GG______
16._CCN 51___
___CT_________AG_______________GG______
17._CCN 51___
___CC_________GG_______________TT______
18._CCN 51___
___CT_________AG_______________GG______
19._CCN 51___
______TTAACGAG___CC______TTGGGGCT
20._CCN 51___
______TTAACGAG___CC______TTGGGGCT
21._CCN 51___
______TTAACGAG___CC______TTGGGGCT
22._CCN 51___
______TTAACGAG___CC______TTGGGGCT
23._CCN 51___
___AG____________AG___AA______CCGG___
24._CCN 51___
___AG____________AG___AA______CCGG___
25._CCN 51___
___CT_________AG_______________GG______
26._CCN 51___
___CT_________AG_______________GG______
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
2._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
3._CCN 51___
GTGTGT___CC___CGAA___CGCCCCAGCT
4._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
5._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
6._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
7._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
8._CCN 51___
GTGTGT___CC___CGAACCCGCCCCAGCT
9._CCN 51___
ACACAC___CC___CGAGGG___GGGGAGAG
10._CCN 51___
________________________CC___CC______CT
11._CCN 51___
________________________CC___CC______CT
12._CCN 51___
________________________CC___CC______CT
13._CCN 51___
________________________CC___CC______CT
14._CCN 51___
________________________CC___CC______CT
15._CCN 51___
________________________CC___CC______CT
16._CCN 51___
______________________________CC______CT
17._CCN 51___
________________________CC___CC______TT
18._CCN 51___
________________________CC___CC______CT
19._CCN 51___
_________CTCCAATT___CC_________AG___
20._CCN 51___
_________CTCCAATT___CC_________AG___
21._CCN 51___
_________CTCCAATT___CC_________AG___
22._CCN 51___
_________CTCCAATT___CC_________AG___
23._CCN 51___
ACACAC___CC___CGAGGG___GGGGAGAG
24._CCN 51___
ACACAC___CC___CGAGGG___GGGGAGAG
25._CCN 51___
________________________CC___CC______CT
26._CCN 51___
________________________CC___CC______CT
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
2._CCN 51___
___CT___AATTAACC______TTCG___CTAG
3._CCN 51___
GGCT___AATTAACC______TTCG___CT___
4._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
5._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
6._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
7._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
8._CCN 51___
GGCT___AATTAACC______TTCG___CTAG
9._CCN 51___
GGAG___AAAAAA_________AA______AGAG
10._CCN 51___
GG______AATTAA__________________CTAG
11._CCN 51___
GG______AATTAA__________________CTAG
12._CCN 51___
GG______AATTAA__________________CTAG
13._CCN 51___
GG______AATTAA__________________CTAG
14._CCN 51___
GG______AATTAA__________________CTAG
15._CCN 51___
_________AATTAA__________________CTAG
16._CCN 51___
GG______AATTAA__________________CT___
17._CCN 51___
GG______AACCAA__________________TTAA
18._CCN 51___
GG______AATTAA__________________CTAG
19._CCN 51___
______GG______AACCCCAT______CT___AG
20._CCN 51___
______GG______AACCCCAT______CT___AG
21._CCN 51___
______GG______AACCCCAT____________AG
22._CCN 51___
______GG______AACCCCAT______CT___AG
23._CCN 51___
GGAG___AAAAAA_________AA______AGAG
24._CCN 51___
GGAG___AAAAAA_________AA______AGAG
25._CCN 51___
GG______AACTAA__________________CTAG
26._CCN 51___
GG______AACTAA__________________CTAG
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
2._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
3._CCN 51___
GTAACCAG___ATCT___TTCC____________
4._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
5._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
6._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
7._CCN 51___
GTAACCAG___ATCTTTTTCCGG_________
8._CCN 51___
GTAACCAG___ATCTTT___CCGG_________
9._CCN 51___
ACAAGGAG_________AAAA___CC_________
10._CCN 51___
___AA____________CT______CC____________
11._CCN 51___
___AA____________CT______CC____________
12._CCN 51___
___AA____________CT______CC____________
13._CCN 51___
___AA____________CT______CC____________
14._CCN 51___
___AA____________CT______CC____________
15._CCN 51___
___AA____________CT______CC____________
16._CCN 51___
___AA____________CT______CC____________
17._CCN 51___
___AA____________CC______TT____________
18._CCN 51___
___AA____________CT______CC____________
19._CCN 51___
____________CT___CT____________GTAACT
20._CCN 51___
____________CT___CT____________GTAACT
21._CCN 51___
____________CT___CT____________GTAA___
22._CCN 51___
____________CT___CT____________GTAACT
23._CCN 51___
ACAAGGAG_________AAAA___CC_________
24._CCN 51___
ACAAGGAG_________AAAA___CC_________
25._CCN 51___
___AA____________CT______CC____________
26._CCN 51___
___AA____________CT______CC____________
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
2._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
3._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
4._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
5._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
6._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
7._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
8._CCN 51___
CCTTCT______TTACGG______TTCTTTGG
9._CCN 51___
___AAAG______AAACGG______AAAGAACC
10._CCN 51___
___TTCT_________AC_________TT___TTGG
11._CCN 51___
___TTCT_________AC_________TT___TTGG
12._CCN 51___
___TTCT_________AC_________TT___TTGG
13._CCN 51___
___TTCT_________AC_________TT___TTGG
14._CCN 51___
___TTCT_________AC_________TT___TTGG
15._CCN 51___
___TTCT_________AC_________TT___TTGG
16._CCN 51___
___TTCT_________AC_________TT___TTGG
17._CCN 51___
___GGCC_________AA_________TT___TTCC
18._CCN 51___
___TTCT_________AC_________TT___TTGG
19._CCN 51___
___TT___GTAT_________AGGG_________GG
20._CCN 51___
___TT___GTAT_________AGGG_________GG
21._CCN 51___
___TT___GT____________AGGG_________GG
22._CCN 51___
___TT___GTAT_________AGGG_________GG
23._CCN 51___
___AAAG______AAACGG______AAAGAACC
24._CCN 51___
___AAAG______AAACGG______AAAGAACC
25._CCN 51___
___TTCT_________AC_________TT___TTGG
26._CCN 51___
___TTCT_________AC_________TT___TTGG
 127 128 129 130 131 132 133 134 135      
1._CCN 51___
AGCT______CC___ACAGAAX_XX_XX_XX_XX_X
2._CCN 51___
AGCT______CC___ACAGAAX_XX_XX_XX_XX_X
3._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
4._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
5._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
6._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
7._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
8._CCN 51___
AGCT______CCAGACAGAAX_XX_XX_XX_XX_X
9._CCN 51___
AGAG______CC___ACAGAAX_XX_XX_XX_XX_X
10._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
11._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
12._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
13._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
14._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
15._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
16._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
17._CCN 51___
GGCC_____________________X_XX_XX_XX_XX_X
18._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
19._CCN 51___
______TTAT_______________X_XX_XX_XX_XX_X
20._CCN 51___
______TTAT_______________X_XX_XX_XX_XX_X
21._CCN 51___
______TTAT_______________X_XX_XX_XX_XX_X
22._CCN 51___
______TTAT_______________X_XX_XX_XX_XX_X
23._CCN 51___
AGAG______CC___ACAGAAX_XX_XX_XX_XX_X
24._CCN 51___
AGAG______CC___ACAGAAX_XX_XX_XX_XX_X
25._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X
26._CCN 51___
AGCT_____________________X_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CCN_51 GC-07-019-1-21

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

2._CCN_51 GC-07-019-1-21

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

3._CCN_51 GC-07-019-1-21

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

4._CCN_51 GC-06-4-1-04

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

5._CCN_51 GC-07-019-1-21

Location: Tree: 10
 Mars, 2018

6._CCN_51 GC-07-019-1-21

Location: Tree: 12
 Mars, 2018

7._CCN_51 GC-07-019-1-21

Location: Tree: 13
 Mars, 2018

8._CCN_51 GC-07-019-1-21

Location: Tree: 14
 Mars, 2018

9._CCN_51 GC-07-19-1-21

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
 Mars, 2018

10._CCN_51

Location: 7121 10
 Dapeng Zhang, 2016

11._CCN_51

Location: 7121 12
 Dapeng Zhang, 2016

12._CCN_51

Location: 7121 13
 Dapeng Zhang, 2016

13._CCN_51

Location: 7121 14
 Dapeng Zhang, 2016

14._CCN_51

Location: 7121 3 > FP
 Dapeng Zhang, 2016

15._CCN_51

Location: 7121 4 > FP
 Dapeng Zhang, 2016

16._CCN_51

Location: 7121 6 > FP
 Dapeng Zhang, 2016

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE) Costa Rica

17._CCN_51

Location: Cabiria
 Dapeng Zhang, 2016

Estation Experimental Tropical Pichilingue Ecuador

18._CCN_51

 Dapeng Zhang, 2016

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

19._CCN_51 RUQ 1736

 Lambert Motilal, 2023
Population Assignment: 

20._CCN_51 RUQ 1737

 Lambert Motilal, 2023

21._CCN_51 RUQ 1737B

 Lambert Motilal, 2023

22._CCN_51 RUQ 1737C

 Lambert Motilal, 2023

23._CCN_51 RUQ 1736

 Mars, 2018

USDA-SHRS United States of America

24._CCN_51 MITC-000000

 Mars, 2018

USAPEN

25._CCN_51

 Dapeng Zhang, 2016

USASPC

26._CCN_51

 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP52 10TcSNP60
11TcSNP75 12TcSNP90 13TcSNP122 14TcSNP131 15TcSNP143
16TcSNP144 17TcSNP150 18TcSNP151 19TcSNP154 20TcSNP174
21TcSNP176 22TcSNP189 23TcSNP193 24TcSNP194 25TcSNP226
26TcSNP230 27TcSNP240 28TcSNP242 29TcSNP290 30TcSNP305
31TcSNP316 32TcSNP329 33TcSNP363 34TcSNP364 35TcSNP372
36TcSNP413 37TcSNP418 38TcSNP421 39TcSNP429 40TcSNP430
41TcSNP448 42TcSNP469 43TcSNP497 44TcSNP519 45TcSNP521
46TcSNP522 47TcSNP529 48TcSNP534 49TcSNP546 50TcSNP547
51TcSNP560 52TcSNP561 53TcSNP577 54TcSNP589 55TcSNP591
56TcSNP602 57TcSNP606 58TcSNP619 59TcSNP640 60TcSNP642
61TcSNP644 62TcSNP645 63TcSNP653 64TcSNP660 65TcSNP689
66TcSNP701 67TcSNP702 68TcSNP723 69TcSNP731 70TcSNP739
71TcSNP751 72TcSNP776 73TcSNP799 74TcSNP800 75TcSNP823
76TcSNP835 77TcSNP836 78TcSNP860 79TcSNP872 80TcSNP878
81TcSNP891 82TcSNP894 83TcSNP899 84TcSNP917 85TcSNP929
86TcSNP944 87TcSNP945 88TcSNP953 89TcSNP994 90TcSNP998
91TcSNP999 92TcSNP1010 93TcSNP1019 94TcSNP1034 95TcSNP1041
96TcSNP1053 97TcSNP1060 98TcSNP1062 99TcSNP1063 100TcSNP1075
101TcSNP1096 102TcSNP1111 103TcSNP1112 104TcSNP1126 105TcSNP1144
106TcSNP1149 107TcSNP1156 108TcSNP1165 109TcSNP1175 110TcSNP1205
111TcSNP1230 112TcSNP1237 113TcSNP1242 114TcSNP1253 115TcSNP1270
116TcSNP1275 117TcSNP1293 118TcSNP1309 119TcSNP1350 120TcSNP1383
121TcSNP1401 122TcSNP1404 123TcSNP1414 124TcSNP1439 125TcSNP1442
126TcSNP1458 127TcSNP1484 128TcSNP1520 129TcSNP1524 130TcSNP1527
131Tcm001s00947643 132Tcm002s20575712 133Tcm003s01336581 134Tcm003s07402719 135Tcm006s26664133