SNP Profiles of CERRO AZUL 10   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._CERRO AZUL 10___
______GGGGTT___GG___CCTTCCCC______
2._CERRO AZUL 10___
______GGGGTT___GG___CCTTCCCC______
3._CERRO AZUL 10___
______GGGGTT___GG___CCTTCCCC______
4._CERRO AZUL 10___
______GGGGTT___GG___CCTTCCCC______
5._CERRO AZUL 10___
______GGGGTT___GG___CCTTCCCC______
6._CERRO AZUL 10___
______GGCCTT___GG___GGAACCGG______
7._CERRO AZUL 10___
TTCC_________CC___CC____________TTTT
8._CERRO AZUL 10___
______GGCCTT___GG___GGAACCGG______
9._CERRO AZUL 10___
___________________________TTCC_________
10._CERRO AZUL 10___
___________________________TTCC_________
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._CERRO AZUL 10___
CCTTCCAAGG______AA___CCAGGGCT___
2._CERRO AZUL 10___
CCTTCCAAGG______AA___CCAGGGCT___
3._CERRO AZUL 10___
CCTTCCAAGG______AA___CCAGGGCT___
4._CERRO AZUL 10___
CCTTCCAAGG______AA___CCAGGGCT___
5._CERRO AZUL 10___
CCTTCCAAGG______AA___CCAGGGCT___
6._CERRO AZUL 10___
CCAAGGTTGG______AA___GGAGGGAG___
7._CERRO AZUL 10___
CC____________CCGG___TT___AG______TT
8._CERRO AZUL 10___
CCAAGGTTGG______AA___GGAGGGAG___
9._CERRO AZUL 10___
ACTTCT___GG______AC___CCAG___TT___
10._CERRO AZUL 10___
CCTTCC___GG______AA___CCAG___CT___
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._CERRO AZUL 10___
___ATGGGGAATTGG___GGATCCAA______
2._CERRO AZUL 10___
___ATGGGGAATTGG___GGATCCAA______
3._CERRO AZUL 10___
___ATGGGGAATTGG___GGATCCAA______
4._CERRO AZUL 10___
___ATGGGGAATTGG___GGATCCAA______
5._CERRO AZUL 10___
___ATGGGGAATTGG___GGATCCAA______
6._CERRO AZUL 10___
___ATGGGGAAAAGG___GGATGG___AA___
7._CERRO AZUL 10___
AA___GG____________CT_______________CC
8._CERRO AZUL 10___
___ATGGGGAAAAGG___GGATGG___AA___
9._CERRO AZUL 10___
______AGGGAA_______________CCAA______
10._CERRO AZUL 10___
______GGGGAA_______________CCAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._CERRO AZUL 10___
CC___CCTT___GGTTAACG___CCTTAATT
2._CERRO AZUL 10___
CC___CCTT___GGTTAACG___CCTTAATT
3._CERRO AZUL 10___
CC___CCTT___GGTTAACG___CCTTAATT
4._CERRO AZUL 10___
CC___CCTT___GGTTAACG___CCTTAATT
5._CERRO AZUL 10___
CC___CCTT___GGTTAACG___CCTTAATT
6._CERRO AZUL 10___
CC___CC______GGAAAACG___CCAA___AA
7._CERRO AZUL 10___
___CTCC___GG_________CGTTCC_________
8._CERRO AZUL 10___
CC___CC______GGAAAACG___CCAA___AA
9._CERRO AZUL 10___
______CCCT______GG___GG___AACT___CC
10._CERRO AZUL 10___
______CC_________TT___CG___CCTT___TT
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._CERRO AZUL 10___
_________GGAA___AATTCCGTGG___TTTT
2._CERRO AZUL 10___
_________GGAA___AATTCCGTGG___TTTT
3._CERRO AZUL 10___
_________GGAA___AATTCCGTGG___TTTT
4._CERRO AZUL 10___
_________GGAA___AATTCCGTGG___TTTT
5._CERRO AZUL 10___
_________GGAA___AATTCCGTGG___TTTT
6._CERRO AZUL 10___
____________AG___AA______ACGG___AAAA
7._CERRO AZUL 10___
TTAACCAA___GG______TTGTGGTT______
8._CERRO AZUL 10___
____________AG___AA______ACGG___AAAA
9._CERRO AZUL 10___
________________________TTGGGG_________
10._CERRO AZUL 10___
________________________TTGTGG_________
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._CERRO AZUL 10___
TT___CC___GG___GGCCCCCCAGTTGGCC
2._CERRO AZUL 10___
TT___CC___GG___GGCCCCCCAGTTGGCC
3._CERRO AZUL 10___
TT___CC___GG___GGCCCCCCAGTTGGCC
4._CERRO AZUL 10___
TT___CC___GG___GGCCCCCCAGTTGGCC
5._CERRO AZUL 10___
TT___CC___GG___GGCCCCCCAGTTGGCC
6._CERRO AZUL 10___
AA___CC___CCGGCC___GGGGAGAAGGGG
7._CERRO AZUL 10___
___TT___AATT_______________AG_________
8._CERRO AZUL 10___
AA___CC___CCGGCC___GGGGAGAAGGGG
9._CERRO AZUL 10___
TT___AA_________CCCCCC_______________
10._CERRO AZUL 10___
TT___CC_________GGCCCC___GG_________
 85 86 87 88 89 90 91 92 93 94 95 96 97 98
1._CERRO AZUL 10___
___AATTAATT______TTCC___CCAAGGAA
2._CERRO AZUL 10___
___AATTAATT______TTCC___CCAAGGAA
3._CERRO AZUL 10___
___AATTAATT______TTCC___CCAAGGAA
4._CERRO AZUL 10___
___AATTAATT______TTCC___CCAAGGAA
5._CERRO AZUL 10___
___AATTAATT______TTCC___CCAAGGAA
6._CERRO AZUL 10___
___AAAAAA_________AA______GGAACCAA
7._CERRO AZUL 10___
CC______AATTCCAA______CT___AA______
8._CERRO AZUL 10___
___AAAAAA_________AA______GGAACCAA
9._CERRO AZUL 10___
_________AACC_______________CT___GG___
10._CERRO AZUL 10___
_________AATT_______________CC___GG___
 99 100 101 102 103 104 105 106 107 108 109 110 111 112
1._CERRO AZUL 10___
CCAG___TTTTTTTTCCGG______CCTTCC
2._CERRO AZUL 10___
CCAG___TTTTTTTTCCGG______CCTTCC
3._CERRO AZUL 10___
CCAG___TTTTTTTTCCGG______CCTTCC
4._CERRO AZUL 10___
CCAG___TTTTTTTTCCGG______CCTTCC
5._CERRO AZUL 10___
CCAG___TTTTTTTTCCGG______CCTTCC
6._CERRO AZUL 10___
GGAG_________AAAA___CC_________AAGG
7._CERRO AZUL 10___
______TT___TT____________TTAA___TT___
8._CERRO AZUL 10___
GGAG_________AAAA___CC_________AAGG
9._CERRO AZUL 10___
___GG___TT________________________TT___
10._CERRO AZUL 10___
___AG___TT________________________TT___
 113 114 115 116 117 118 119 120 121 122 123 124 125 126
1._CERRO AZUL 10___
___TTAAGG______TTTTCTGGAATT______
2._CERRO AZUL 10___
___TTAAGG______TTTTCTGGAATT______
3._CERRO AZUL 10___
___TTAAGG______TTTTCTGGAATT______
4._CERRO AZUL 10___
___TTAAGG______TTTTCTGGAATT______
5._CERRO AZUL 10___
___TTAAGG______TTTTCTGGAATT______
6._CERRO AZUL 10___
___AAAAGG______AAAAAGCCAAAA______
7._CERRO AZUL 10___
TT_________GGGG__________________TTTT
8._CERRO AZUL 10___
___AAAAGG______AAAAAGCCAAAA______
9._CERRO AZUL 10___
___TT_______________CCTTCGAG_________
10._CERRO AZUL 10___
___TT_______________TTCTGGAA_________
 127 128 129 130 131          
1._CERRO AZUL 10___
CCAAACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._CERRO AZUL 10___
CCAAACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._CERRO AZUL 10___
CCAAACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._CERRO AZUL 10___
CCAAACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._CERRO AZUL 10___
CCAAACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._CERRO AZUL 10___
CC___ACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._CERRO AZUL 10___
_______________X_XX_XX_XX_XX_XX_XX_XX_XX_X
8._CERRO AZUL 10___
CC___ACAAAAX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._CERRO AZUL 10___
_______________X_XX_XX_XX_XX_XX_XX_XX_XX_X
10._CERRO AZUL 10___
_______________X_XX_XX_XX_XX_XX_XX_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._CERRO_AZUL_10 GC-05-077-2-28

Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

2._CERRO_AZUL_10 GC-05-077-2-28

Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

3._CERRO_AZUL_10 GC-05-077-2-28

Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

4._CERRO_AZUL_10 GC-05-077-2-28

Location: Tree: 4
Notes: 4 > FP4
 Mars, 2018

5._CERRO_AZUL_10 GC-05-077-2-28

Location: Tree: 5
Notes: 5
 Mars, 2018

6._CERRO_AZUL_10 GC-05-77-2-28

Location: Field: 5, Block: 2, Rep: 28, Tree: 5
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

International Cocoa Quarantine Centre, Reading (ICQC,R) United Kingdom

7._CERRO_AZUL_10 RUQ 936

 Lambert Motilal, 2023
Population Assignment: 

8._CERRO_AZUL_10 RUQ 936

Notes: Reading_Collection
 Mars, 2018

9._CERRO_AZUL_10 RUQ 936

 Dapeng Zhang, 2014

10._CERRO_AZUL_10 RUQ 936

 Dapeng Zhang, 2014

  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP25 4TcSNP28 5TcSNP32
6TcSNP33 7TcSNP42 8TcSNP49 9TcSNP60 10TcSNP75
11TcSNP90 12TcSNP122 13TcSNP131 14TcSNP143 15TcSNP144
16TcSNP150 17TcSNP151 18TcSNP154 19TcSNP174 20TcSNP176
21TcSNP189 22TcSNP193 23TcSNP194 24TcSNP226 25TcSNP230
26TcSNP240 27TcSNP242 28TcSNP290 29TcSNP305 30TcSNP316
31TcSNP329 32TcSNP364 33TcSNP372 34TcSNP413 35TcSNP418
36TcSNP421 37TcSNP429 38TcSNP430 39TcSNP448 40TcSNP469
41TcSNP497 42TcSNP519 43TcSNP521 44TcSNP522 45TcSNP529
46TcSNP534 47TcSNP546 48TcSNP547 49TcSNP560 50TcSNP561
51TcSNP577 52TcSNP589 53TcSNP591 54TcSNP602 55TcSNP606
56TcSNP619 57TcSNP640 58TcSNP642 59TcSNP644 60TcSNP645
61TcSNP653 62TcSNP660 63TcSNP689 64TcSNP701 65TcSNP702
66TcSNP723 67TcSNP731 68TcSNP739 69TcSNP751 70TcSNP776
71TcSNP799 72TcSNP800 73TcSNP823 74TcSNP835 75TcSNP836
76TcSNP860 77TcSNP872 78TcSNP878 79TcSNP891 80TcSNP894
81TcSNP899 82TcSNP917 83TcSNP929 84TcSNP944 85TcSNP945
86TcSNP953 87TcSNP994 88TcSNP998 89TcSNP999 90TcSNP1010
91TcSNP1019 92TcSNP1034 93TcSNP1041 94TcSNP1053 95TcSNP1060
96TcSNP1062 97TcSNP1063 98TcSNP1075 99TcSNP1096 100TcSNP1111
101TcSNP1112 102TcSNP1126 103TcSNP1144 104TcSNP1149 105TcSNP1156
106TcSNP1165 107TcSNP1175 108TcSNP1205 109TcSNP1230 110TcSNP1242
111TcSNP1253 112TcSNP1270 113TcSNP1293 114TcSNP1309 115TcSNP1350
116TcSNP1383 117TcSNP1401 118TcSNP1404 119TcSNP1414 120TcSNP1439
121TcSNP1442 122TcSNP1458 123TcSNP1484 124TcSNP1520 125TcSNP1524
126TcSNP1527 127Tcm001s00947643 128Tcm002s20575712 129Tcm003s01336581 130Tcm003s07402719
131Tcm006s26664133