SNP Profiles of IMC 96   View Data

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
1._IMC 96___
GGGTATAGCCTTCCTTACGGCCTTGGAA
2._IMC 96___
GGGTATAGCCTTCCTTACGGCCTTGGAA
3._IMC 96___
GGGGATGGCCTTCCCTCCGTCCAAGGAA
4._IMC 96___
GGGTATAGCCTTCCTTACGGCCTTGGAA
5._IMC 96___
GGGTATAGCCTTCCTTACGGCCTTGGAA
6._IMC 96___
GG___AT_______________ACGGCC______AA
7._IMC 96___
GG___AT_______________ACGGCC______AA
8._IMC 96___
GG___AT_______________CCGTCC______AA
9._IMC 96___
GG___AT_______________ACGGCC______AA
10._IMC 96___
GG___AT_______________ACGGCC______AA
11._IMC 96___
GG___TT_______________CCGTCC______AC
12._IMC 96___
GG___TT_______________CCGTCC______AC
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
1._IMC 96___
CGAGGGCCAAGGGGAACCGGGGAACGAA
2._IMC 96___
CGAGGGCCAAGGGGAACCGGGGAACGAA
3._IMC 96___
CCAAGGCTAAGGGGAATTGGGGATCCAA
4._IMC 96___
CGAGGGCCAAGGGGAACCGGGGAACGAA
5._IMC 96___
CGAGGGCCAAGGGGAACCGGGGAACGAA
6._IMC 96___
CGAG___CC_________AA______GG______AA
7._IMC 96___
CGAG___CC_________AA______GG______AA
8._IMC 96___
CCAA___CT_________AA______GG______AA
9._IMC 96___
CGAG___CC_________AA______GG______AA
10._IMC 96___
CGAG___CC_________AA______GG______AA
11._IMC 96___
___AG___CT_________AA______GG______AA
12._IMC 96___
___AG___CT_________AA______GG______AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
1._IMC 96___
AACCCTAGGGGGGGAACCAACCAAAAAA
2._IMC 96___
AACCCTAGGGGGGGAACCAACCAAAAAA
3._IMC 96___
CCACCCAGGTAACCAACTAACTAAAAAA
4._IMC 96___
AACCCTAGGGGGGGAACCAACCAAAAAA
5._IMC 96___
AACCCTAGGGGGGGAACCAACCAAAAAA
6._IMC 96___
___CCCT___GG___GGAA______CCAA______
7._IMC 96___
___CCCT___GG___GGAA______CCAA______
8._IMC 96___
___ACCC___GT___CCAA______CTAA______
9._IMC 96___
___CCCT___GG___GGAA______CCAA______
10._IMC 96___
___CCCT___GG___GGAA______CCAA______
11._IMC 96___
___CCCT___GT___GG_________CCAA______
12._IMC 96___
___CCCT___GT___GG_________CCAA______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
1._IMC 96___
TTCCGGGGTTGGTTCCGGAACCCC___CC
2._IMC 96___
TTCCGGGGTTGGTTCCGGAACC___CTCC
3._IMC 96___
CTCCGGAGTTGTTTAACG___GGCCCCCC
4._IMC 96___
TTCCGGGGTTGGTTCCGGAACCCCCTCC
5._IMC 96___
TTCCGGGGTT___TTCCGGAACCCCCTCC
6._IMC 96___
______GG_____________________CC_________
7._IMC 96___
______GG_____________________CC___CT___
8._IMC 96___
______GG_____________________GG___CC___
9._IMC 96___
______GG_____________________CC___CT___
10._IMC 96___
______GG_____________________CC___CT___
11._IMC 96___
______GG_____________________CC___CT___
12._IMC 96___
______GG_____________________CC___CT___
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
1._IMC 96___
GGCTGGCCAATTGGCCTTCCCCGGGGAA
2._IMC 96___
GGCTGGCCAATTGGCCTTCCCCGGGGAA
3._IMC 96___
GGCCCGCCAACTAACCTTCCCTAAGGAA
4._IMC 96___
GGCTGGCCAATTGGCCTTCCCCGGGGAA
5._IMC 96___
GGCTGGCCAATTGGCCTTCCCCGGGGAA
6._IMC 96___
___CTGG___AATTGG_________CCGG___AA
7._IMC 96___
___CTGG___AATTGG_________CCGG___AA
8._IMC 96___
___CCCG___AACTAA_________CTAA___AA
9._IMC 96___
___CTGG___AATTGG_________CCGG___AA
10._IMC 96___
___CTGG___AATTGG_________CCGG___AA
11._IMC 96___
___CCGG___AATTAA_________CTGG___AA
12._IMC 96___
___CCGG___AATTAA_________CTGG___AA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
1._IMC 96___
CCAGTTCCTTCTCCGTCCGTTTTTAAGG
2._IMC 96___
CCAGTTCCTTCTCCGTCCGTTTTTAAGG
3._IMC 96___
CCAGTTCTTTTTCCTTCCTTTTTTAAGG
4._IMC 96___
CCAGTTCCTTCTCCGTCCGTTTTTAAGG
5._IMC 96___
CCAGTTCCTTCTCCGTCCGTTTTTAAGG
6._IMC 96___
_________CC______CC______GTTT___AA___
7._IMC 96___
_________CC______CC______GTTT___AA___
8._IMC 96___
_________CT______CC______TTTT___AA___
9._IMC 96___
_________CC______CC______GTTT___AA___
10._IMC 96___
_________CC______CC______GTTT___AA___
11._IMC 96___
_________CC______CC______TTTT___CC___
12._IMC 96___
_________CC______CC______TTTT___CC___
 85 86 87 88 89 90 91 92 93 94 95    
1._IMC 96___
TTCCTTCGAACCCCAAAAAAACX_XX_XX_X
2._IMC 96___
TTCCTTCGAACCCCAAAAAAACX_XX_XX_X
3._IMC 96___
TTTTCTGGAGCTCCAAACAAAAX_XX_XX_X
4._IMC 96___
TTCCTTCGAACCCCAAAAAAACX_XX_XX_X
5._IMC 96___
TTCCTTCGAACCCCAAAAAAACX_XX_XX_X
6._IMC 96___
TT___TTCGAACC_______________X_XX_XX_X
7._IMC 96___
TT___TTCGAACC_______________X_XX_XX_X
8._IMC 96___
TT___CTGGAGCT_______________X_XX_XX_X
9._IMC 96___
TT___TTCGAACC_______________X_XX_XX_X
10._IMC 96___
TT___TTCGAACC_______________X_XX_XX_X
11._IMC 96___
CT___TTCGAGCC_______________X_XX_XX_X
12._IMC 96___
CT___TTCGAGCC_______________X_XX_XX_X

 Key

Mars Center for Cocoa Science Brazil

1._IMC_96 GC-08-255-8-23

Location: Tree: 1
Notes: 1
 Mars, 2018

2._IMC_96 GC-08-255-8-23

Location: Tree: 2
Notes: 2
 Mars, 2018

3._IMC_96 GC-08-255-8-23

Location: Tree: 4
Notes: 4
 Mars, 2018

4._IMC_96 GC-08-255-8-23

Location: Tree: 5
Notes: 5
 Mars, 2018

5._IMC_96 GC-08-255-8-23

Location: Tree: 6
Notes: 6
 Mars, 2018

6._IMC_96

Location: 8823 1
 Dapeng Zhang, 2016

7._IMC_96

Location: 8823 2
 Dapeng Zhang, 2016

8._IMC_96

Location: 8823 4
 Dapeng Zhang, 2016

9._IMC_96

Location: 8823 5
 Dapeng Zhang, 2016

10._IMC_96

Location: 8823 6
 Dapeng Zhang, 2016

International Cocoa Genebank, Trinidad (ICG,T) Trinidad and Tobago

11._IMC_96

Location: MARPER D562
 Dapeng Zhang, 2016

12._IMC_96

Location: 6B A46 T2
 Dapeng Zhang, 2016

  Key to SNP Markers

1TcSNP25 2TcSNP28 3TcSNP32 4TcSNP42 5TcSNP60
6TcSNP75 7TcSNP90 8TcSNP122 9TcSNP144 10TcSNP150
11TcSNP151 12TcSNP154 13TcSNP174 14TcSNP193 15TcSNP226
16TcSNP230 17TcSNP240 18TcSNP242 19TcSNP316 20TcSNP329
21TcSNP364 22TcSNP372 23TcSNP413 24TcSNP418 25TcSNP429
26TcSNP430 27TcSNP448 28TcSNP469 29TcSNP521 30TcSNP529
31TcSNP534 32TcSNP547 33TcSNP560 34TcSNP561 35TcSNP577
36TcSNP591 37TcSNP602 38TcSNP606 39TcSNP619 40TcSNP645
41TcSNP653 42TcSNP689 43TcSNP701 44TcSNP702 45TcSNP723
46TcSNP731 47TcSNP751 48TcSNP776 49TcSNP799 50TcSNP823
51TcSNP836 52TcSNP860 53TcSNP872 54TcSNP878 55TcSNP891
56TcSNP894 57TcSNP899 58TcSNP917 59TcSNP929 60TcSNP944
61TcSNP953 62TcSNP994 63TcSNP998 64TcSNP999 65TcSNP1034
66TcSNP1041 67TcSNP1060 68TcSNP1062 69TcSNP1063 70TcSNP1075
71TcSNP1096 72TcSNP1111 73TcSNP1126 74TcSNP1144 75TcSNP1149
76TcSNP1156 77TcSNP1165 78TcSNP1175 79TcSNP1242 80TcSNP1253
81TcSNP1270 82TcSNP1309 83TcSNP1350 84TcSNP1383 85TcSNP1414
86TcSNP1439 87TcSNP1442 88TcSNP1458 89TcSNP1484 90TcSNP1520
91Tcm001s00947643 92Tcm002s20575712 93Tcm003s01336581 94Tcm003s07402719 95Tcm006s26664133