SNP Profiles of CCN-51   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAACCTCCGGAGCCCCCTCCGGCCCTAA
1._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
2._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
3._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
4._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
5._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
6._CCN_51___
AAACCTCCGGAGCCCCCTCCGGCCCTAA
7._CCN_51___
AAACCT__GG____CCCTCCGGCCCTAA
8._CCN_51___
AAACCTCC________CTCCGGCC____
9._CCN_51___
AAACCTCC________CTCCGGCC____
10._CCN_51___
AAACCTCC________CTCCGGCC____
11._CCN_51___
AAACCTCC________CTCCGGCC____
12._CCN_51___
AAACCTCC________CTCCGGCC____
13._CCN_51___
AAACCTCC________CTCCGGCC____
14._CCN_51___
AAACCTCC________CTCCGGCC____
15._CCN_51___
AAACCT__________CTCCGGCC____
16._CCN_51___
AAACCTCC________CTCCGGCC____
17._CCN_51___
AAACCTCC________CTCCGGCC____
18._CCN_51___
______CC____TT______________
19._CCN_51___
______CC____TT______________
20._CCN_51___
______CC____TT______________
21._CCN_51___
______CC____TT______________
22._CCN_51___
AAAACCCC________TTTTGGCC____
23._CCN_51___
AAAC__CCGGAG__GGAG__GGGGAGTT
24._CCN_51___
AAAC__CCGGAG__GGAG__GGGGAGTT
25._CCN_51___
AAAC__CCGGAG__GGAG__GGGGAGTT
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ACAAAGCGCGCTAATTAGTTAACCCCAA
1._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
2._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
3._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
4._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
5._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
6._CCN_51___
ACAAAGCGCGCTAATTAGTTAACCCCAA
7._CCN_51___
ACAA__CGCGCTAA__AGTTAACC__AA
8._CCN_51___
____AG____________TTAA__CCAA
9._CCN_51___
____AG____________TTAA__CCAA
10._CCN_51___
____AG____________TTAA__CCAA
11._CCN_51___
____AG____________TTAA__CCAA
12._CCN_51___
____AG____________TTAA__CCAA
13._CCN_51___
____AG____________TTAA__CCAA
14._CCN_51___
____AG____________TTAA__CCAA
15._CCN_51___
__________________TTAA____AA
16._CCN_51___
____AG____________TTAA__CCAA
17._CCN_51___
____AG____________TTAA__CCAA
18._CCN_51___
____AGTT________________CC__
19._CCN_51___
____AGTT________________CC__
20._CCN_51___
____AGTT________________CC__
21._CCN_51___
____AGTT________________CC__
22._CCN_51___
____AA____________AATT__CCAA
23._CCN_51___
ACAGAGCG__AGAGAAAGTTAAGGGGAA
24._CCN_51___
ACAGAGCG__AGAGAAAGTTAAGGGGAA
25._CCN_51___
ACAGAGCG__AGAGAAAGTTAAGGGGAA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGAGCCACAATTGGGTAGCCAGCTCC
1._CCN_51___
TTGGAGCCACAATTGGGTAGCCAG__CC
2._CCN_51___
TTGGAGCCACAATTGGGTAGCCAG__CC
3._CCN_51___
TTGGAGCCACAATTGGGTAGCCAG__CC
4._CCN_51___
TTGGAGCCACAATTGGGTAGCCAGCTCC
5._CCN_51___
TTGGAGCCACAATTGGGTAGCCAGCTCC
6._CCN_51___
TTGGAGCCACAATTGGGTAGCCAG__CC
7._CCN_51___
TT__AGCCACAATTGGGTAGCCAGCTCC
8._CCN_51___
______CC__AATT____AG________
9._CCN_51___
______CC__AATT____AG________
10._CCN_51___
______CC__AATT____AG________
11._CCN_51___
______CC__AATT____AG________
12._CCN_51___
______CC__AATT____AG________
13._CCN_51___
______CC__AATT____AG________
14._CCN_51___
______CC__AATT____AG________
15._CCN_51___
______CC__AATT____AG________
16._CCN_51___
______CC__AATT____AG________
17._CCN_51___
______CC__AATT____AG________
18._CCN_51___
______CC__AA________CC______
19._CCN_51___
______CC__AA________CC______
20._CCN_51___
______CC__AA________CC______
21._CCN_51___
______CC__AA________CC______
22._CCN_51___
______CC__AAGG____GG________
23._CCN_51___
AACCAGCCACAAAACCACAGGGAGAGGG
24._CCN_51___
AACCAGCCACAAAACCACAGGGAGAGGG
25._CCN_51___
AACCAGCCACAAAACCACAGGGAGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GTATCTGGAGAGCTCCGGAGGTTTCCCT
1._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
2._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
3._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
4._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
5._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
6._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
7._CCN_51___
GTATCTGGAGAGCTCCGGAGGTTTCCCT
8._CCN_51___
____CT__________________CCCT
9._CCN_51___
____CT__________________CCCT
10._CCN_51___
____CT__________________CCCT
11._CCN_51___
____CT__________________CCCT
12._CCN_51___
____CT__________________CCCT
13._CCN_51___
____CT__________________CCCT
14._CCN_51___
____CT__________________CCCT
15._CCN_51___
____CT__________________CCCT
16._CCN_51___
____CT__________________CCCT
17._CCN_51___
____CT__________________CCCT
18._CCN_51___
________AG__________________
19._CCN_51___
________AG__________________
20._CCN_51___
________AG__________________
21._CCN_51___
________AG__________________
22._CCN_51___
____CC__________________TTCC
23._CCN_51___
AC__AG__AGAAAG__GGAGACAAGGAG
24._CCN_51___
AC__AG__AGAAAG__GGAGACAAGGAG
25._CCN_51___
AC__AG__AGAAAG__GGAGACAAGGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTAGCGCTTTAAGGAGACAATTGGGGTT
1._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGGTT
2._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGGTT
3._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGGTT
4._CCN_51___
GTAG__CTTTAAGGAGACAATTGGGGTT
5._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGG__
6._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGGTT
7._CCN_51___
GTAGCGCTTTAAGGAGACAATTGGGGTT
8._CCN_51___
____CG__TTAAGG__ACAATTGG____
9._CCN_51___
____CG__TTAAGG__ACAATTGG____
10._CCN_51___
____CG__TTAAGG__ACAATTGG____
11._CCN_51___
____CG__TTAAGG__ACAATTGG____
12._CCN_51___
____CG__TTAAGG__ACAATTGG____
13._CCN_51___
____CG__TTAAGG__ACAATTGG____
14._CCN_51___
____CG__TTAAGG__ACAATTGG____
15._CCN_51___
____CG__TTAAGG__ACAATTGG____
16._CCN_51___
____CG__TTAAGG__ACAATTGG____
17._CCN_51___
____CG__TTAAGG__ACAATTGG____
18._CCN_51___
__AG____________ACAA__GGGG__
19._CCN_51___
__AG____________ACAA__GGGG__
20._CCN_51___
__AG____________ACAA__GGGG__
21._CCN_51___
__AG____________ACAA__GGGG__
22._CCN_51___
____GG__TTCCGG__AAGGGGTT____
23._CCN_51___
ACAGCGAGAAAAGGAGACAAAACCGG__
24._CCN_51___
ACAGCGAGAAAAGGAGACAAAACCGG__
25._CCN_51___
ACAGCGAGAAAAGGAGACAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CGAGCTACAGCCAAACGGCTCCCTTTCT
1._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
2._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
3._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
4._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
5._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
6._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
7._CCN_51___
CGAGCTACAGCCAAACGGCTCCCTTTCT
8._CCN_51___
__AGCT________ACGG____CTTTCT
9._CCN_51___
__AGCT________ACGG____CTTTCT
10._CCN_51___
__AGCT________ACGG____CTTTCT
11._CCN_51___
__AGCT________ACGG____CTTTCT
12._CCN_51___
__AGCT________ACGG____CTTTCT
13._CCN_51___
__AGCT________ACGG____CTTTCT
14._CCN_51___
__AGCT________ACGG____CTTTCT
15._CCN_51___
__AGCT________ACGG____CTTTCT
16._CCN_51___
__AGCT________ACGG____CTCTCT
17._CCN_51___
__AGCT________ACGG____CTCTCT
18._CCN_51___
__AG____________GG__CC____CT
19._CCN_51___
__AG__________AAGG__CC____CT
20._CCN_51___
__AG__________AAGG__CC____CT
21._CCN_51___
__AG__________AAGG__CC____CT
22._CCN_51___
__GGTT________CCCC____CCCCCC
23._CCN_51___
____AGACAGCCAAACCCAGCCAGAA__
24._CCN_51___
____AGACAGCCAAACCCAGCCAGAA__
25._CCN_51___
____AGACAGCCAAACCCAGCCAGAA__
 85 86 87 88 89 90         
_Input profile
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
1._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
2._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
3._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
4._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
5._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
6._CCN_51___
__AGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
7._CCN_51___
TTAGCCCTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
8._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
9._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
10._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
11._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
12._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
13._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
14._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
15._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
16._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
17._CCN_51___
__AG__CTTTTTX_XX_XX_XX_XX_XX_XX_XX_X
18._CCN_51___
____CC__TT__X_XX_XX_XX_XX_XX_XX_XX_X
19._CCN_51___
____CC__TT__X_XX_XX_XX_XX_XX_XX_XX_X
20._CCN_51___
____CC__TT__X_XX_XX_XX_XX_XX_XX_XX_X
21._CCN_51___
____CC__TT__X_XX_XX_XX_XX_XX_XX_XX_X
22._CCN_51___
__GG__TTGGTTX_XX_XX_XX_XX_XX_XX_XX_X
23._CCN_51___
AA____AGAAAAX_XX_XX_XX_XX_XX_XX_XX_X
24._CCN_51___
AA____AGAAAAX_XX_XX_XX_XX_XX_XX_XX_X
25._CCN_51___
AA____AGAAAAX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: CCN_51 GC-07-019-1-21

 
Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL4
Notes: PL4 FP2
 Mars, 2018

1._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
 Mars, 2018

2._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
 Mars, 2018

3._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
 Mars, 2018

4._CCN_51 GC-06-4-1-04

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 4, Tree: PL7
Notes: PL7 FP
 Mars, 2018

5._CCN_51 GC-07-019-1-21

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

6._CCN_51 GC-07-019-1-21

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
 Mars, 2018

7._CCN_51 GC-07-019-1-21

identical
83 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

8._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 4 > FP
 Dapeng Zhang, 2016

9._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 3 > FP
 Dapeng Zhang, 2016

10._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 14
 Dapeng Zhang, 2016

11._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 13
 Dapeng Zhang, 2016

12._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 12
 Dapeng Zhang, 2016

13._CCN_51

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 10
 Dapeng Zhang, 2016

14._CCN_51

identical
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

15._CCN_51

identical
36 shared markers

Mars Center for Cocoa Science, Brazil
Location: 7121 6 > FP
 Dapeng Zhang, 2016

16._CCN_51

98.7 %
39 shared markers

 Dapeng Zhang, 2016

17._CCN_51

98.7 %
39 shared markers

 Dapeng Zhang, 2016

18._CCN_51 RUQ_1737B

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

19._CCN_51 RUQ_1736

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

20._CCN_51 RUQ_1737

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

21._CCN_51 RUQ_1737C

88.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

22._CCN_51

48.7 %
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

23._CCN_51 GC-07-19-1-21

48.7 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1
 Mars, 2018

24._CCN_51 RUQ_1736

48.7 %
77 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Mars, 2018

25._CCN_51 MITC-000000

48.7 %
77 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP860 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP497 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP823 82TcSNP619 83TcSNP994 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414