SNP Profiles of ICS 95   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_39___
AAAACTACAGAG__CCCTCTGGCTCCCT
2._ICS_39___
AAAACTACAGAGCTCCCTCTGGCTCCCT
3._ICS_39___
AAAACTACAGAGCTCCCTCTGGCTCCCT
4._ICS_39___
AAAACTAC________CTCTGG__CC__
5._ICS_39___
AAAACTAC________CTCTGG__CC__
6._ICS_39___
AAAACTAC________CTCTGG__CC__
7._ICS_39___
AAAACTAC________CTCTGG__CC__
8._ICS_39___
AAAACTAC________CTCTGG__CC__
9._ICS_39___
AAAACTAC________CTCTGG__CC__
10._ICS_39___
AAAACTAC________CTCTGG__CC__
11._ICS_39___
AAAACTACAGAGCTCCCTCTGGCTCCCT
12._ICS_39___
AAAACTACAGAGCTCCCTCTGGCTCCCT
13._ICS_39___
AAAACTACAGAGCTCCCTCTGGCTCCCT
14._ICS_39___
AAAACTAC________CTCTGG__CC__
15._ICS_39___
AAAACTAC________CTCTAG__CC__
16._ICS_39___
AAACCCAA________CTCCGG__CC__
17._ICS_39___
______AA____TT______________
18._ICS_39___
AAAA__ACAGAG__GGAG__GGAGGGAG
19._ICS_39___
AA____AAGGGG__GGAG__GGAAGGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
3._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
4._ICS_39___
______AA____GG________ATAT__
5._ICS_39___
______AA____GG________ATAT__
6._ICS_39___
______AA____GG________ATAT__
7._ICS_39___
______AA____GG________ATAT__
8._ICS_39___
______AA____GG________ATAT__
9._ICS_39___
______AA____GG________ATAT__
10._ICS_39___
______AA____GG________ATAT__
11._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
12._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
13._ICS_39___
ATCCAAAAGGCGGGCTAGTTAGATATCG
14._ICS_39___
______AA____GG________ATAT__
15._ICS_39___
______AA____GG________ATAT__
16._ICS_39___
______AG____GG________TTAT__
17._ICS_39___
______AGTT__________________
18._ICS_39___
ATCCAGAACC__GGAGAAAAAGATATCG
19._ICS_39___
TTAAGGAGCC__GGAAAAAAGGTTATGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGGTAGCCAA
1._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
2._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
3._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
4._ICS_39___
CGAA______CC__AAGT____AG____
5._ICS_39___
CGAA______CC__AAGT____AG____
6._ICS_39___
CGAA______CC__AAGT____AG____
7._ICS_39___
CGAA______CC__AAGT____AG____
8._ICS_39___
CGAA______CC__AAGT____AG____
9._ICS_39___
CGAA______CC__AAGT____AG____
10._ICS_39___
CGAA______CC__AAGT____AG____
11._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
12._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
13._ICS_39___
CGAACTGTAGCCACAAGTGGGTAGCCAA
14._ICS_39___
CGAA______CC__AAGT____AG____
15._ICS_39___
CGAA______CC__AAGT____AG____
16._ICS_39___
CCAT______GG__AGGG____AG____
17._ICS_39___
CC________GG__AG________CC__
18._ICS_39___
CGAAAGACAGCGACAAACCCACAGGGAA
19._ICS_39___
GGATAACCGGGGCCAGCCCCAAAAGGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTCCGTATCCAGAGCTCCGGGGGTTTCT
1._ICS_39___
CTCCGTATCCAGAGCTCCGGGGGTTTCT
2._ICS_39___
CTCCGTATCCAGAGCTCCGGGGGTTTCT
3._ICS_39___
CTCCGTATCCAGAG__CCGGGGGTTTCT
4._ICS_39___
________CC________________CT
5._ICS_39___
________CC________________CT
6._ICS_39___
________CC________________CT
7._ICS_39___
________CC________________CT
8._ICS_39___
________CC________________CT
9._ICS_39___
________CC________________CT
10._ICS_39___
________CC________________CT
11._ICS_39___
__CCGTATCCAGAGCTCCGGGGGTTTCT
12._ICS_39___
__CCGTATCCAGAGCTCCGGGGGTTTCT
13._ICS_39___
__CCGTATCCAGAGCTCCGGGGGTTTCT
14._ICS_39___
________CC________________CT
15._ICS_39___
________CC________________CT
16._ICS_39___
________TT________________CT
17._ICS_39___
____________GG______________
18._ICS_39___
AGGGAC__GG__AGAG__GGGGCCAGAG
19._ICS_39___
AAGGCC__AA__GGGG__GGAAACAAAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CTGTGGCGCTCTACGGAGACAGGTGTAG
1._ICS_39___
CTGTGGCGCTCTACGGAGACAGGTGTAG
2._ICS_39___
CTGTGGCGCTCT__GGAGACAGGTGTAG
3._ICS_39___
CTGTGGCGCTCTACGGAGACAGGTGTAG
4._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
5._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
6._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
7._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
8._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
9._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
10._ICS_39___
CT____CG__CT__GG__ACAGGTGT__
11._ICS_39___
CTGTGGCGCTCTACGGAGACAGGTGTAG
12._ICS_39___
CTGTGGCGCTCTACGGAGACAGGTGTAG
13._ICS_39___
CTGTGGCGCTCTACGGAGACAGGTGTAG
14._ICS_39___
CT____CG__CTACGG__ACAGGTGT__
15._ICS_39___
CT____GG__CTACGG__ACAGGTGT__
16._ICS_39___
CC____CC__TTACGG__ACAGGTGG__
17._ICS_39___
____GG____________ACAG__GGGG
18._ICS_39___
AGACGGCGAGAGACGGAGACAGACAAAG
19._ICS_39___
GGAAGGGGGGAAACGGGGACAGACCCGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CTCCGGTTCCAGACAAAGCCCGCTATCC
1._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
2._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
3._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
4._ICS_39___
____GGTT__________CCCG______
5._ICS_39___
____GGTT__________CCCG______
6._ICS_39___
____GGTT__________CCCG______
7._ICS_39___
____GGTT__________CCCG______
8._ICS_39___
____GGTT__________CCCG______
9._ICS_39___
____GGTT__________CCCG______
10._ICS_39___
____GGTT__________CCCG______
11._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
12._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
13._ICS_39___
CTCCGGTTCCAGACAAAGCCCGCTATCC
14._ICS_39___
____AGTT__________CCGG______
15._ICS_39___
____AGTT__________CCGG______
16._ICS_39___
____AACT__________CCCC______
17._ICS_39___
____AA____________CCCC____AC
18._ICS_39___
______AAACAGACAA__CCCCAGATAC
19._ICS_39___
______AGACAACCAC__CCGGGGAAAC
 85 86 87 88 89 90 91 92 93 94 95    
_Input profile
CTCTCTTTAGCTCTGTTTCCCCX_XX_XX_X
1._ICS_39___
CTCTCTTTAGCTCTGTTTCCCCX_XX_XX_X
2._ICS_39___
CTCTCTTTAGCTCTGTTTCCCCX_XX_XX_X
3._ICS_39___
CTCTCTTTAGCTCTGTTTCCCCX_XX_XX_X
4._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
5._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
6._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
7._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
8._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
9._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
10._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
11._ICS_39___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
12._ICS_39___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
13._ICS_39___
CTCTCTTTAGCTCTGTTTATGGX_XX_XX_X
14._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
15._ICS_39___
CTCTCT__AG__CTGTTT____X_XX_XX_X
16._ICS_39___
CCTTCC__AA__CTTTTT____X_XX_XX_X
17._ICS_39___
____CC____CT__TT______X_XX_XX_X
18._ICS_39___
AGAG__AA____AGAAAAATGGX_XX_XX_X
19._ICS_39___
GGAA__AA____AGAAAAAAGGX_XX_XX_X

Input profile: ICS_39 GC-01-85-5-02

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL14
Notes: PL14 FP3
 Mars, 2018

1._ICS_39 GC-01-85-5-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL15
Notes: PL15 FP4
 Mars, 2018

2._ICS_39 GC-01-85-5-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL8
Notes: PL8 FP1
 Mars, 2018

3._ICS_39 GC-01-85-5-02

identical
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 5, Rep: 2, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

4._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 9
 Dapeng Zhang, 2016

5._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 12
 Dapeng Zhang, 2016

6._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 16
 Dapeng Zhang, 2016

7._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL14 F
 Dapeng Zhang, 2016

8._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL15 F
 Dapeng Zhang, 2016

9._ICS_39

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL5 FP
 Dapeng Zhang, 2016

10._ICS_39

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1502 PL8 FP
 Dapeng Zhang, 2016

11._ICS_39 GC-01-085-5-02

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

12._ICS_39 GC-01-085-5-02

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

13._ICS_39 GC-01-085-5-02

97.9 %
94 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._ICS_39

97.5 %
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 9 C0200 2A
 Dapeng Zhang, 2016

15._ICS_39

95 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E361 T3
 Dapeng Zhang, 2016

16._ICS_39 RUQ_1089

66.3 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

17._ICS_39 RUQ_1089

57.1 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._ICS_39 ICS_39_Fld#_30_Plt#_2

49.4 %
81 shared markers

USDA-TARS, United States of America
Location: Field: 30, Tree: 2
 Mars, 2018

19._ICS_39 RUQ_1089

30 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP751 40TcSNP1484
41TcSNP602 42TcSNP561 43TcSNP497 44TcSNP894 45TcSNP1063
46TcSNP1126 47TcSNP1270 48TcSNP606 49TcSNP329 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414 94TcSNP154 95TcSNP240