SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAACTACAGAGCTCCCTCTGGCTCCCT
1._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
2._ICS_40___
AAAACTAC________CTCTGG__CC__
3._ICS_40___
AAAACTAC________CTCTGG__CC__
4._ICS_40___
AAAACTAC________CTCTGG__CC__
5._ICS_40___
AAAACTAC________CTCTGG__CC__
6._ICS_40___
AAAACTAC________CTCTGG__CC__
7._ICS_40___
AAAACTAC________CTCTGG__CC__
8._ICS_40___
AAAACTAC________CTCTGG__CC__
9._ICS_40___
AAAACTAC________CTCTGG__CC__
10._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
11._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
12._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
13._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
14._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
15._ICS_40___
AAAACTACAGAGCTCCCTCTGGCTCCCT
16._ICS_40___
____CTAA____CT__CT____CTCC__
17._ICS_40___
AAAACTAC________CTCTGG__CC__
18._ICS_40___
AAAACTAC________CTCTGG__CC__
19._ICS_40___
AAAACT__________CTCTGG__CC__
20._ICS_40___
______AC____CT______________
21._ICS_40___
AAACCTCC________CCCCAG__CC__
22._ICS_40___
AAACCCCCAGAGTTTTCCTTAACTTTCT
23._ICS_40___
AAACCCCC________CCTTAA__TT__
24._ICS_40___
AAAA__ACAGAG__GGAG__GGAGGGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
ATCCAAAAGGCGGGCTAGTTAGATATCG
1._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
2._ICS_40___
______AA____GG________ATAT__
3._ICS_40___
______AA____GG________ATAT__
4._ICS_40___
______AA____GG________ATAT__
5._ICS_40___
______AA____GG________ATAT__
6._ICS_40___
______AA____GG________ATAT__
7._ICS_40___
______AA____GG________ATAT__
8._ICS_40___
______AA____GG________ATAT__
9._ICS_40___
______AA____GG________ATAT__
10._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
11._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
12._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
13._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
14._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
15._ICS_40___
ATCCAAAAGGCGGGCTAGTTAGATATCG
16._ICS_40___
__________CG________AG__ATCG
17._ICS_40___
______AA____GG________ATAT__
18._ICS_40___
______AA____GG________ATAT__
19._ICS_40___
______AA____GG________AT____
20._ICS_40___
______AATT__________________
21._ICS_40___
______GG____CG________TTAA__
22._ICS_40___
ATAAAAGGCCCGGGCCAACTAGATATCG
23._ICS_40___
______GG____GG________ATAT__
24._ICS_40___
ATCCAGAACC__GGAGAGAAAGATATCG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CGAACTGTAGCCACAAGTGGAGCCAACT
1._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAACT
2._ICS_40___
CGAA______CC__AAGT__AG______
3._ICS_40___
CGAA______CC__AAGT__AG______
4._ICS_40___
CGAA______CC__AAGT__AG______
5._ICS_40___
CGAA______CC__AAGT__AG______
6._ICS_40___
CGAA______CC__AAGT__AG______
7._ICS_40___
CGAA______CC__AAGT__AG______
8._ICS_40___
CGAA______CC__AAGT__AG______
9._ICS_40___
CGAA______CC__AAGT__AG______
10._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
11._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
12._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
13._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
14._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
15._ICS_40___
CGAACTGTAGCCACAAGTGGAGCCAA__
16._ICS_40___
CG______AGCCACAAGT__AGCC____
17._ICS_40___
CGAA______CC__AAGT__AG______
18._ICS_40___
CGAA______CC__AAGT__AG______
19._ICS_40___
CGAA______CC__AAGT__________
20._ICS_40___
CG________CC__AA______CC____
21._ICS_40___
CGAA______CC__AAGT__GG______
22._ICS_40___
CCATTTGTGGGGCCAAGGGGGGCCGG__
23._ICS_40___
CCAT______GG__AAGG__GG______
24._ICS_40___
CGAAAGACAGCCACAAACCCAGGGAAAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
1._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
2._ICS_40___
____CC__________________CTCT
3._ICS_40___
____CC__________________CTCT
4._ICS_40___
____CC__________________CTCT
5._ICS_40___
____CC__________________CTCT
6._ICS_40___
____CC__________________CTCT
7._ICS_40___
____CC__________________CTCT
8._ICS_40___
____CC__________________CTCT
9._ICS_40___
____CC__________________CTCT
10._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
11._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
12._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
13._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
14._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
15._ICS_40___
CCGTCCAGAGAGCTCCGGGGGTTTCTCT
16._ICS_40___
__GT____AG____________CTCT__
17._ICS_40___
____CC__________________CTCT
18._ICS_40___
____CC__________________CTCT
19._ICS_40___
____________________________
20._ICS_40___
________AG__________________
21._ICS_40___
____CT__________________CCCC
22._ICS_40___
CCGGCTAGGGAGCCACGGAGGTTTTTCC
23._ICS_40___
____CT__________________TTCC
24._ICS_40___
GGACGG__AGAGAG__GGGGACAGAGAG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
GTGGCGCTCTACGGAGACAGGTGTAGCC
1._ICS_40___
GTGGCGCTCT__GGAGACAGGTGTAGCC
2._ICS_40___
____CG__CTACGG__ACAGGTGT____
3._ICS_40___
____CG__CTACGG__ACAGGTGT____
4._ICS_40___
____CG__CTACGG__ACAGGTGT____
5._ICS_40___
____CG__CTACGG__ACAGGTGT____
6._ICS_40___
____CG__CTACGG__ACAGGTGT____
7._ICS_40___
____CG__CTACGG__ACAGGTGT____
8._ICS_40___
____CG__CTACGG__ACAGGTGT____
9._ICS_40___
____CG__CT__GG__ACAGGTGT____
10._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
11._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
12._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
13._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
14._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
15._ICS_40___
GTGGCGCTCTACGGAGACAGGTGTAGCC
16._ICS_40___
GT__CGCTCTAC__AGACAGGTGTAG__
17._ICS_40___
____CG__CTACGG__ACAGGTGT____
18._ICS_40___
____CG__CTACGG__ACAGGTGT____
19._ICS_40___
________CTACGG__ACAGGTGT____
20._ICS_40___
__GG____________ACAG__GTAG__
21._ICS_40___
____GG__TTACCG__CCAATTGG____
22._ICS_40___
TTGGCCCCTTCCGGGGACAGGGGTAGCC
23._ICS_40___
____CC__TTCCGG__ACAGGGGT____
24._ICS_40___
ACGGCGAGAGACGGAGACAGACACAG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
GGTTCCAGACAAAGCCCGCTATCCCTCT
1._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
2._ICS_40___
GGTT__________CCCG______CTCT
3._ICS_40___
GGTT__________CCCG______CTCT
4._ICS_40___
GGTT__________CCCG______CTCT
5._ICS_40___
GGTT__________CCCG______CTCT
6._ICS_40___
GGTT__________CCCG______CTCT
7._ICS_40___
GGTT__________CCCG______CTCT
8._ICS_40___
GGTT__________CCCG______CTCT
9._ICS_40___
GGTT__________CCCG______CTCT
10._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
11._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
12._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
13._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
14._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
15._ICS_40___
GGTTCCAGACAAAGCCCGCTATCCCTCT
16._ICS_40___
______________CCCG____CCCT__
17._ICS_40___
AGTT__________CCCG______CTCT
18._ICS_40___
AGTT__________CCGG______CTCT
19._ICS_40___
AGTT__________CCGG______CTCT
20._ICS_40___
AG____________CCCG____CC__CT
21._ICS_40___
AACT__________ACGG______CTCC
22._ICS_40___
AACTACAGACCCAAAACCCCAAACTTCC
23._ICS_40___
AACT__________AACC______TTCC
24._ICS_40___
__AACCAGACAA__CCCCAGATCCAG__
 85 86 87 88 89 90 91 92       
_Input profile
TTAGCTCTGTTTCCCCX_XX_XX_XX_XX_XX_X
1._ICS_40___
TTAGCTCTGTTTCCCCX_XX_XX_XX_XX_XX_X
2._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
3._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
4._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
5._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
6._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
7._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
8._ICS_40___
__AG__CT__TT____X_XX_XX_XX_XX_XX_X
9._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
10._ICS_40___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
11._ICS_40___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
12._ICS_40___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
13._ICS_40___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
14._ICS_40___
TTAGCTCTGTTTATGGX_XX_XX_XX_XX_XX_X
15._ICS_40___
TTAGCTCT__TTATGGX_XX_XX_XX_XX_XX_X
16._ICS_40___
__AG__CTGT______X_XX_XX_XX_XX_XX_X
17._ICS_40___
__AG__CTGTCT____X_XX_XX_XX_XX_XX_X
18._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
19._ICS_40___
__AG__CTGTTT____X_XX_XX_XX_XX_XX_X
20._ICS_40___
____CT__GT______X_XX_XX_XX_XX_XX_X
21._ICS_40___
__AA__TTGTCT____X_XX_XX_XX_XX_XX_X
22._ICS_40___
CCAGCCCCGGCTATGGX_XX_XX_XX_XX_XX_X
23._ICS_40___
__AG__CCGGCT____X_XX_XX_XX_XX_XX_X
24._ICS_40___
AA____AGAAAAATGGX_XX_XX_XX_XX_XX_X

Input profile: ICS_40 GC-01-106-6-03

 
Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

1._ICS_40 GC-01-106-6-03

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 3, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

2._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4
 Dapeng Zhang, 2016

3._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 1
 Dapeng Zhang, 2016

4._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6
 Dapeng Zhang, 2016

5._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 11
 Dapeng Zhang, 2016

6._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 13
 Dapeng Zhang, 2016

7._ICS_40

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 4 > FP
 Dapeng Zhang, 2016

8._ICS_40

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 16
 Dapeng Zhang, 2016

9._ICS_40

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 6 > FP
 Dapeng Zhang, 2016

10._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: Dead
 Mars, 2018

11._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

12._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: Dead
 Mars, 2018

13._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

14._ICS_40 GC-01-106-6-03

97.8 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

15._ICS_40 GC-01-106-6-03

97.8 %
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

16._ICS_40 RUQ_1432

97.5 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._ICS_40 RUQ_1432

97.4 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

18._ICS_40

97.4 %
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0201 2A
 Dapeng Zhang, 2016

19._ICS_40

96.9 %
32 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block2
 Dapeng Zhang, 2016

20._ICS_40 RUQ_1432

92.9 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

21._ICS_40

61.5 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 6B E287 T4
 Dapeng Zhang, 2016

22._ICS_40 GC-01-106-6-03

60.4 %
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._ICS_40

55.1 %
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1603 9
 Dapeng Zhang, 2016

24._ICS_40 RUQ_1432

53.8 %
80 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP860 18TcSNP1062 19TcSNP836 20TcSNP878
21TcSNP929 22TcSNP413 23TcSNP653 24TcSNP1149 25TcSNP174
26TcSNP32 27TcSNP372 28TcSNP448 29TcSNP872 30TcSNP953
31TcSNP1034 32TcSNP1175 33TcSNP1111 34TcSNP577 35TcSNP90
36TcSNP998 37TcSNP150 38TcSNP28 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP497 43TcSNP894 44TcSNP1063 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP1041
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP1144 85TcSNP1156
86TcSNP469 87TcSNP999 88TcSNP242 89TcSNP1253 90TcSNP1414
91TcSNP154 92TcSNP240