SNP Profiles of SIC 628   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGGGCCCCCCCCGGTTCCCC
1._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
2._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
3._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
4._SIC_628___
AAAA__CCGGGG__GGGG__GGAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._SIC_628___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._SIC_628___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._SIC_628___
AACCAAGGCCGG__AATTGGTTAACCGG
4._SIC_628___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACCCCGGTTGGAATTAATTCC
1._SIC_628___
AATTGGAACCCCGGTTGGAATTAATTCC
2._SIC_628___
AATTGGAACCCCGGTTGGAATTAATTCC
3._SIC_628___
AATTGGAACCCCGGTTGGAATTAATTCC
4._SIC_628___
AAAACCAACCCCGGAA__AAAAAAAAGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTCCAAGGAACCCCGGGGTTTTCCTT
1._SIC_628___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
2._SIC_628___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
3._SIC_628___
GGTTCCAAGGAACCCCGGGGTTTTCCTT
4._SIC_628___
CC__GG__GGAAGG__GGGGAAAAGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTAACCTTCCAAGGGGAAAATTGGGGTT
1._SIC_628___
TTAACCTTCCAAGGGGAAAATTGGGGTT
2._SIC_628___
TTAACCTTCCAAGGGGAAAATTGGGGTT
3._SIC_628___
TTAACCTTCCAAGGGGAAAATTGGGGTT
4._SIC_628___
AAAAGGAAGGAAGGGGAAAAAACCGG__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
CCGGTTCCAACCAAAACCGGCCTTAATT
1._SIC_628___
CCGGTTCCAACCAAAACCGGCCTTAATT
2._SIC_628___
CCGGTTCCAACCAAAACCGGCCTTAATT
3._SIC_628___
CCGG__CCAACCAAAACCGGCCTT__TT
4._SIC_628___
____AACCAACCAA__CCCCGGTTAAAA
 85 86 87 88 89 90 91        
_Input profile
TTTTTTAACCTTTTX_XX_XX_XX_XX_XX_XX_X
1._SIC_628___
TTTTTTAACCTTTTX_XX_XX_XX_XX_XX_XX_X
2._SIC_628___
TT__TTAACCTTTTX_XX_XX_XX_XX_XX_XX_X
3._SIC_628___
TT__TTAA__TTTTX_XX_XX_XX_XX_XX_XX_X
4._SIC_628___
AA__AA__GGAAAAX_XX_XX_XX_XX_XX_XX_X

Input profile: SIC_628 GC-06-15-1-15

 
Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

1._SIC_628 GC-06-15-1-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL2
Notes: PL2 FP3
 Mars, 2018

2._SIC_628 GC-06-15-1-15

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

3._SIC_628 GC-06-15-1-15

identical
86 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

4._SIC_628 GC-06-15-1-15

48.1 %
77 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP497 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP1041 72TcSNP645 73TcSNP917 74Tcm003s01336581 75Tcm003s07402719
76Tcm001s00947643 77Tcm006s26664133 78Tcm002s20575712 79TcSNP529 80TcSNP1458
81TcSNP60 82TcSNP430 83TcSNP823 84TcSNP619 85TcSNP994
86TcSNP1144 87TcSNP1156 88TcSNP469 89TcSNP242 90TcSNP1253
91TcSNP1414