SNP Profiles of SIC-628   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AAAATTCCGGGGCCCCCCCCGGTTCCCC
1._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
2._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
3._SIC_628___
AAAATTCCGGGGCCCCCCCCGGTTCCCC
4._SIC_628___
AAAA__CCGGGG__GGGG__GGAAGGGG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AACCAAGGCCGGTTAATTGGTTAACCGG
1._SIC_628___
AACCAAGGCCGGTTAATTGGTTAACCGG
2._SIC_628___
AACCAAGGCCGGTTAATTGGTTAACCGG
3._SIC_628___
AACCAAGGCCGG__AATTGGTTAACCGG
4._SIC_628___
TTCCAACC__GGAAGGAAGGTTAAGGCC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGAACCCCGGTTGGTTAATTAATT
1._SIC_628___
AATTGGAACCCCGGTTGGTTAATTAATT
2._SIC_628___
AATTGGAACCCCGGTTGG__AATTAATT
3._SIC_628___
AATTGGAACCCCGGTTGGTTAATTAATT
4._SIC_628___
AAAACCAACCCCGGAA__AAAAAAAAAA
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTCCAAGGAACCCCGGGGTTTTCC
1._SIC_628___
CCGGTTCCAAGGAACCCCGGGGTTTTCC
2._SIC_628___
CCGGTTCCAAGGAACCCCGGGGTTTTCC
3._SIC_628___
CCGGTTCCAAGGAACCCCGGGGTTTTCC
4._SIC_628___
GGCC__GG__GGAAGG__GGGGAAAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTTTAACCTTCCAAGGGGAAAATTGGGG
1._SIC_628___
TTTTAACCTTCCAAGGGGAAAATTGGGG
2._SIC_628___
TTTTAACCTTCCAAGGGGAAAATTGGGG
3._SIC_628___
TTTTAACCTTCCAAGGGGAAAATTGGGG
4._SIC_628___
AAAAAAGGAAGGAAGGGGAAAAAACCGG
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCCGGTTCCAACCAAAACCGGCCTTAA
1._SIC_628___
TTCCGGTTCCAACCAAAACCGGCCTTAA
2._SIC_628___
TTCCGGTTCCAACCAAAACCGGCCTTAA
3._SIC_628___
TTCCGG__CCAACCAAAACCGGCCTT__
4._SIC_628___
______AACCAACCAA__CCCCGGTTAA
 85 86 87 88 89 90 91 92 93      
_Input profile
TTTTTTTTAATTCCTTTTX_XX_XX_XX_XX_X
1._SIC_628___
TTTT__TTAATTCCTTTTX_XX_XX_XX_XX_X
2._SIC_628___
TTTTTTTTAA__CCTTTTX_XX_XX_XX_XX_X
3._SIC_628___
TTTT__TTAATT__TTTTX_XX_XX_XX_XX_X
4._SIC_628___
AAAA__AA____GGAAAAX_XX_XX_XX_XX_X

Input profile: SIC_628 GC-06-15-1-15

 
Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL2
Notes: PL2 FP3
 Mars, 2018

1._SIC_628 GC-06-15-1-15

identical
92 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL5
Notes: PL5 FP2
 Mars, 2018

2._SIC_628 GC-06-15-1-15

identical
91 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

3._SIC_628 GC-06-15-1-15

identical
88 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: PL6
Notes: PL6 FP4
 Mars, 2018

4._SIC_628 GC-06-15-1-15

47.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 6, Block: 1, Rep: 15, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP497 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP645 74TcSNP917 75Tcm003s01336581
76Tcm003s07402719 77Tcm001s00947643 78Tcm006s26664133 79Tcm002s20575712 80TcSNP529
81TcSNP1458 82TcSNP60 83TcSNP430 84TcSNP823 85TcSNP619
86TcSNP994 87TcSNP1144 88TcSNP1156 89TcSNP469 90TcSNP999
91TcSNP242 92TcSNP1253 93TcSNP1414