SNP Profiles of EET 233A   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCGGTTCTTTAA
1._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
2._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
3._IMC_67___
AACCCCACGGGGCCCCCCGGTTCTTTAA
4._IMC_67___
AACCCCAC__GGCCCCCCGGTTCTTTAA
5._IMC_67___
AACCCCAC______CCCCGG__CT____
6._IMC_67___
AACCCCAC______CCCCGG__CT____
7._IMC_67___
AACCCCAC______CCCCGG__CT____
8._IMC_67___
AACCCCAC______CCCCGG__CT____
9._IMC_67___
AACCCCAC______CCCCGG__CT____
10._IMC_67___
AACCCCAC______CCCCGG__CT____
11._IMC_67___
AACCCCAC______CCCCGG__CT____
12._IMC_67___
AACCCCAC______CCCCGG__CT____
13._IMC_67___
AACCCCAC______CCCCGG__CT____
14._IMC_67___
AACCCCAC______CCCCGG__CT____
15._IMC_67___
AACCCCAC______CCCCGG__CT____
16._IMC_67___
____CCAC____TTCC____TTTT____
17._IMC_67___
______AC____TT______________
18._IMC_67___
______AC______CC______CC____
19._IMC_67___
AACC__ACGGGG__GG__GGAAAGAATT
20._IMC_67___
AACC__ACGGGG__GG__GGAAAGAATT
21._IMC_67___
AACC__ACGGGG__GG__GGAAAGAATT
22._IMC_67___
AACC__ACGGGG__GG__GGAAAGAATT
23._IMC_67___
AACC__ACGGGG__GG__GGAAAGAGAA
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAGGCGCCGGCTAATTGGTTAACCCCAA
1._IMC_67___
AAGGCGCCGGCTAATTGGTTAACCCCAA
2._IMC_67___
AAGGCGCCGGCTAATTGGTTAACCCCAA
3._IMC_67___
AAGGCGCCGGCTAATTGGTT__CCCCAA
4._IMC_67___
AAGGCGCCGGCTAATTGGTT__CCCCAA
5._IMC_67___
__GG____GG________TTAA__CCAA
6._IMC_67___
__GG____GG________TTAA__CCAA
7._IMC_67___
__GG____GG________TTAA__CCAA
8._IMC_67___
__GG____GG________TTAA__CCAA
9._IMC_67___
__GG____GG________TTAA__CCAA
10._IMC_67___
__GG____GG________TTAA__CCAA
11._IMC_67___
__GG____GG________TT____CCAA
12._IMC_67___
__GG____GG________TT____CCAA
13._IMC_67___
__GG____GG________TTAA__CCAA
14._IMC_67___
__GG____GG________TTAA__CCAA
15._IMC_67___
__GG____GG________TTAA__CCAA
16._IMC_67___
______CC________GG__AACCCC__
17._IMC_67___
__GGTT__________________CC__
18._IMC_67___
______GG__CT____GG__ATCCCG__
19._IMC_67___
AAGGCG__GGAGAAAAGGTTAAGGGGAA
20._IMC_67___
AAGGCG__GGAGAAAAGGTTAAGGGGAA
21._IMC_67___
AAGGCG__GGAGAAAAGGTTAAGGGGAA
22._IMC_67___
AAGGCG__GGAGAAAAGGTTAAGGGGAA
23._IMC_67___
ACGGGG__CGGGAAAGGGAAAACCGGAT
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTGGGGGGCCAAGTGGTTAGCCGGCCCC
1._IMC_67___
TTGGGGGGCCAAGTGGTTAGCCGG__CC
2._IMC_67___
TTGGGGGGCCAAGTGGTTAGCCGGCCCC
3._IMC_67___
TTGGGGGGCCAAGTGGTTAGCCGGCCCC
4._IMC_67___
TTGGGGGGCCAAGTGGTTAGCCGGCCCC
5._IMC_67___
______GG__AAGT____AG________
6._IMC_67___
______GG__AAGT____AG________
7._IMC_67___
______GG__AAGT____AG________
8._IMC_67___
______GG__AAGT____AG________
9._IMC_67___
______GG__AAGT____AG________
10._IMC_67___
______GG__AAGT____AG________
11._IMC_67___
______GG__AAGT____AG________
12._IMC_67___
______GG__AAGT____AG________
13._IMC_67___
______GG__AAGT____AG________
14._IMC_67___
______GG__AGGT____AG________
15._IMC_67___
______GG__AGGT____AG________
16._IMC_67___
____GGCGCCAAGT____AGCC______
17._IMC_67___
______GG__AA________CC______
18._IMC_67___
____GGGG________GT__CC______
19._IMC_67___
AACCGGCGCCAAACCCAAAGGGGGGGGG
20._IMC_67___
AACCGGCGCCAAACCCAAAGGGGGGGGG
21._IMC_67___
AACCGGCGCCAAACCCAAAGGGGGGGGG
22._IMC_67___
AACCGGCGCCAAACCCAAAGGGGGGGGG
23._IMC_67___
AAAAGGGGACAACCCCAAAAGGGGAGGG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
GGTTTTGGAAAACCCCGGAGGTTTCTCC
1._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
2._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
3._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
4._IMC_67___
GGTTTTGGAAAACCCCGGAGGTTTCTCC
5._IMC_67___
____TT__________________CTCC
6._IMC_67___
____TT__________________CTCC
7._IMC_67___
____TT__________________CTCC
8._IMC_67___
____TT__________________CTCC
9._IMC_67___
____TT__________________CTCC
10._IMC_67___
____TT__________________CTCC
11._IMC_67___
____TT__________________CTCC
12._IMC_67___
____TT__________________CTCC
13._IMC_67___
____TT__________________CTCC
14._IMC_67___
____TT__________________CTCC
15._IMC_67___
____TT__________________CTCC
16._IMC_67___
GGTT____AA____________TTCT__
17._IMC_67___
________AA__________________
18._IMC_67___
__TT__AA________________CT__
19._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
20._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
21._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
22._IMC_67___
CC__AA__AAAAGG__GGAGACAAAGGG
23._IMC_67___
CC__AA__AGAGAG__GGAGACGGAAGG
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
TTGGCGCCTTACGGGGCCAGGTGGGGTT
1._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
2._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
3._IMC_67___
TT__CGCCTTACGGGGCCAGGTGGGGTT
4._IMC_67___
TTGGCGCCTTACGGGGCCAGGTGGGGTT
5._IMC_67___
____CG__TTACGG__CCAGGTGG____
6._IMC_67___
____CG__TTACGG__CCAGGTGG____
7._IMC_67___
____CG__TTACGG__CCAGGTGG____
8._IMC_67___
____CG__TTACGG__CCAGGTGG____
9._IMC_67___
____CG__TTACGG__CCAGGTGG____
10._IMC_67___
____CG__TTACGG__CCAGGTGG____
11._IMC_67___
____CG__TTACGG__CCAGGTGG____
12._IMC_67___
____CG__TTACGG__CCAGGTGG____
13._IMC_67___
____CG__TTACGG__CCAGGTGG____
14._IMC_67___
____CG__TTACGG__CCAGGTGG____
15._IMC_67___
____CG__TTACGG__CCAGGTGG____
16._IMC_67___
TT__CGCCTTAC__GGCCAGGTGGGG__
17._IMC_67___
__GG____________CCAG__GGGG__
18._IMC_67___
____GGCC__AC__GGAAAA________
19._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
20._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
21._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
22._IMC_67___
AAGGCGGGAAACGGGGCCAGACCCGG__
23._IMC_67___
AAGGGGGGAGCCCGGGACGGCCCCAA__
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
AACCAAAAACACAGACGGCCATCCCCTT
1._IMC_67___
AACCAAAAACACAGACGGCCATCCCCTT
2._IMC_67___
__CCAA__ACACAGACGGCCATCCCCTT
3._IMC_67___
AACCAAAAACACAGACGGCCATCCCCTT
4._IMC_67___
AACCAAAAACACAGACGGCCATCCCCTT
5._IMC_67___
AACC__________ACGG______CCTT
6._IMC_67___
AACC__________ACGG______CCTT
7._IMC_67___
AACC__________ACGG______CCTT
8._IMC_67___
AACC__________ACGG______CCTT
9._IMC_67___
AACC__________ACGG______CCTT
10._IMC_67___
AACC__________ACGG______CCTT
11._IMC_67___
AACC__________ACGG______CCTT
12._IMC_67___
AACC__________ACGG______CCTT
13._IMC_67___
__CC__________ACGG______CCTT
14._IMC_67___
AACC__________ACGG______CCTT
15._IMC_67___
AACC__________ACGG______CCTT
16._IMC_67___
______________ACGG____CCCC__
17._IMC_67___
AA____________ACGG____CC____
18._IMC_67___
________________CG________CC
19._IMC_67___
__GGAAAAACAC__ACCCGGATCCGGAA
20._IMC_67___
__GGAAAAACAC__ACCCGGATCCGGAA
21._IMC_67___
__GGAAAAACAC__ACCCGGATCCGGAA
22._IMC_67___
__GGAAAAACAC__ACCCGGATCCGGAA
23._IMC_67___
__AACCGGAACC__CCGGGGATCCAAAG
 85 86 87 88 89 90 91        
_Input profile
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
1._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
2._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
3._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
4._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
5._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
6._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
7._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
8._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
9._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
10._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
11._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
12._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
13._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
14._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
15._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
16._IMC_67___
____AACCCTGT__X_XX_XX_XX_XX_XX_XX_X
17._IMC_67___
CC____CC__GT__X_XX_XX_XX_XX_XX_XX_X
18._IMC_67___
______________X_XX_XX_XX_XX_XX_XX_X
19._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
20._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
21._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
22._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
23._IMC_67___
__AG____AGAAAGX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_67 GC-05-82-2-33

 
Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

1._IMC_67 GC-05-082-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

3._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

4._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

5._IMC_67

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

6._IMC_67

identical
40 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

7._IMC_67

identical
40 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

8._IMC_67

identical
40 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

9._IMC_67

identical
40 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

10._IMC_67

identical
40 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

11._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

12._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

98.8 %
40 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._IMC_67

98.8 %
40 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

16._IMC_67 RUQ_1056

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._IMC_67 RUQ_1056

90.5 %
21 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._IMC_67 IMC67

68.8 %
24 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

50.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

50.6 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

50.6 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

50.6 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

39.7 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1060 9TcSNP1165 10TcSNP429
11TcSNP75 12TcSNP891 13TcSNP122 14TcSNP316 15TcSNP521
16TcSNP1062 17TcSNP836 18TcSNP878 19TcSNP929 20TcSNP413
21TcSNP653 22TcSNP1149 23TcSNP174 24TcSNP32 25TcSNP372
26TcSNP448 27TcSNP872 28TcSNP953 29TcSNP1034 30TcSNP1175
31TcSNP1111 32TcSNP577 33TcSNP90 34TcSNP998 35TcSNP150
36TcSNP28 37TcSNP751 38TcSNP1484 39TcSNP602 40TcSNP561
41TcSNP497 42TcSNP894 43TcSNP1063 44TcSNP1126 45TcSNP1270
46TcSNP606 47TcSNP329 48TcSNP689 49TcSNP944 50TcSNP1242
51TcSNP1383 52TcSNP547 53TcSNP776 54TcSNP1309 55TcSNP151
56TcSNP1520 57TcSNP799 58TcSNP899 59TcSNP226 60TcSNP1439
61TcSNP1442 62TcSNP193 63TcSNP25 64TcSNP364 65TcSNP144
66TcSNP230 67TcSNP560 68TcSNP723 69TcSNP731 70TcSNP701
71TcSNP645 72TcSNP917 73Tcm003s01336581 74Tcm003s07402719 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414