SNP Profiles of EET 233   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACCCCACGGGGCCCCCCCCGGTTCTTT
1._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
2._IMC_67___
AACCCCACGGGGCCCCCCCCGGTTCTTT
3._IMC_67___
AACCCCACGGGGCC__CCCCGGTTCTTT
4._IMC_67___
AACCCCAC__GGCCCCCCCCGGTTCTTT
5._IMC_67___
AACCCCAC________CCCCGG__CT__
6._IMC_67___
AACCCCAC________CCCCGG__CT__
7._IMC_67___
AACCCCAC________CCCCGG__CT__
8._IMC_67___
AACCCCAC________CCCCGG__CT__
9._IMC_67___
AACCCCAC________CCCCGG__CT__
10._IMC_67___
AACCCCAC________CCCCGG__CT__
11._IMC_67___
AACCCCAC________CCCCGG__CT__
12._IMC_67___
AACCCCAC________CCCCGG__CT__
13._IMC_67___
AACCCCAC________CCCCGG__CT__
14._IMC_67___
AACCCCAC________CCCCGG__CT__
15._IMC_67___
AACCCCAC________CCCCGG__CT__
16._IMC_67___
____CCAC____TT__CC____TTTT__
17._IMC_67___
______AC____TT______________
18._IMC_67___
______AC________CC______CC__
19._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
20._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
21._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
22._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAA
23._IMC_67___
AACC__ACGGGG__GGGG__GGAAAGAG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AAAAGGCGCCGGCTAATTGGTTAACCCC
1._IMC_67___
AAAAGGCGCCGGCTAATTGGTTAACCCC
2._IMC_67___
AAAAGGCGCCGGCTAATTGGTT__CCCC
3._IMC_67___
AAAAGGCGCCGGCTAATTGGTTAACCCC
4._IMC_67___
AAAAGGCGCCGGCTAATTGGTT__CCCC
5._IMC_67___
____GG____GG________TTAA__CC
6._IMC_67___
____GG____GG________TTAA__CC
7._IMC_67___
____GG____GG________TTAA__CC
8._IMC_67___
____GG____GG________TTAA__CC
9._IMC_67___
____GG____GG________TTAA__CC
10._IMC_67___
____GG____GG________TTAA__CC
11._IMC_67___
____GG____GG________TTAA__CC
12._IMC_67___
____GG____GG________TT____CC
13._IMC_67___
____GG____GG________TT____CC
14._IMC_67___
____GG____GG________TTAA__CC
15._IMC_67___
____GG____GG________TTAA__CC
16._IMC_67___
________CC________GG__AACCCC
17._IMC_67___
____GGTT__________________CC
18._IMC_67___
________GG__CT____GG__ATCCCG
19._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
20._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
21._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
22._IMC_67___
TTAAGGCG__GGAGAAAAGGTTAAGGGG
23._IMC_67___
AAACGGGG__CGGGAAAGGGAAAACCGG
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AATTGGGGGGCCAAGTGGTTAGCCGGCC
1._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGG__
2._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
3._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
4._IMC_67___
AATTGGGGGGCCAAGTGGTTAGCCGGCC
5._IMC_67___
AA______GG__AAGT____AG______
6._IMC_67___
AA______GG__AAGT____AG______
7._IMC_67___
AA______GG__AAGT____AG______
8._IMC_67___
AA______GG__AAGT____AG______
9._IMC_67___
AA______GG__AAGT____AG______
10._IMC_67___
AA______GG__AAGT____AG______
11._IMC_67___
AA______GG__AAGT____AG______
12._IMC_67___
AA______GG__AAGT____AG______
13._IMC_67___
AA______GG__AAGT____AG______
14._IMC_67___
AA______GG__AGGT____AG______
15._IMC_67___
AA______GG__AGGT____AG______
16._IMC_67___
______GGCGCCAAGT____AGCC____
17._IMC_67___
________GG__AA________CC____
18._IMC_67___
______GGGG________GT__CC____
19._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
20._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
21._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
22._IMC_67___
AAAACCGGCGCCAAACCCAAAGGGGGGG
23._IMC_67___
ATAAAAGGGGACAACCCCAAAAGGGGAG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCGGTTTTGGAAAACCCCGGAGGTTTCT
1._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
2._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
3._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
4._IMC_67___
CCGGTTTTGGAAAACCCCGGAGGTTTCT
5._IMC_67___
______TT__________________CT
6._IMC_67___
______TT__________________CT
7._IMC_67___
______TT__________________CT
8._IMC_67___
______TT__________________CT
9._IMC_67___
______TT__________________CT
10._IMC_67___
______TT__________________CT
11._IMC_67___
______TT__________________CT
12._IMC_67___
______TT__________________CT
13._IMC_67___
______TT__________________CT
14._IMC_67___
______TT__________________CT
15._IMC_67___
______TT__________________CT
16._IMC_67___
__GGTT____AA____________TTCT
17._IMC_67___
__________AA________________
18._IMC_67___
____TT__AA________________CT
19._IMC_67___
GGCC__AA__AAAAGG__GGAGACAAAG
20._IMC_67___
GGCC__AA__AAAAGG__GGAGACAAAG
21._IMC_67___
GGCC__AA__AAAAGG__GGAGACAAAG
22._IMC_67___
GGCC__AA__AAAAGG__GGAGACAAAG
23._IMC_67___
GGCC__AA__AGAGAG__GGAGACGGAA
 57 58 59 60 61 62 63 64 65 66 67 68 69 70
_Input profile
CCTTGGCGCCTTACGGGGCCAGGTGGGG
1._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
2._IMC_67___
CCTT__CGCCTTACGGGGCCAGGTGGGG
3._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
4._IMC_67___
CCTTGGCGCCTTACGGGGCCAGGTGGGG
5._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
6._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
7._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
8._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
9._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
10._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
11._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
12._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
13._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
14._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
15._IMC_67___
CC____CG__TTACGG__CCAGGTGG__
16._IMC_67___
__TT__CGCCTTAC__GGCCAGGTGGGG
17._IMC_67___
____GG____________CCAG__GGGG
18._IMC_67___
______GGCC__AC__GGAAAA______
19._IMC_67___
GGAAGGCGGGAAACGGGGCCAGACCCGG
20._IMC_67___
GGAAGGCGGGAAACGGGGCCAGACCCGG
21._IMC_67___
GGAAGGCGGGAAACGGGGCCAGACCCGG
22._IMC_67___
GGAAGGCGGGAAACGGGGCCAGACCCGG
23._IMC_67___
GGAAGGGGGGAGCCCGGGACGGCCCCAA
 71 72 73 74 75 76 77 78 79 80 81 82 83 84
_Input profile
TTCGCCAAACACAGACGGCCATCCCCTT
1._IMC_67___
TTCGCCAAACACAGACGGCCATCCCCTT
2._IMC_67___
TTCGCCAAACACAGACGGCCATCCCCTT
3._IMC_67___
TT__CCAAACACAGACGGCCATCCCCTT
4._IMC_67___
TTCGCCAAACACAGACGGCCATCCCCTT
5._IMC_67___
____CC________ACGG______CCTT
6._IMC_67___
____CC________ACGG______CCTT
7._IMC_67___
____CC________ACGG______CCTT
8._IMC_67___
____CC________ACGG______CCTT
9._IMC_67___
____CC________ACGG______CCTT
10._IMC_67___
____CC________ACGG______CCTT
11._IMC_67___
____CC________ACGG______CCTT
12._IMC_67___
____CC________ACGG______CCTT
13._IMC_67___
____CC________ACGG______CCTT
14._IMC_67___
____CC________ACGG______CCTT
15._IMC_67___
____CC________ACGG______CCTT
16._IMC_67___
______________ACGG____CCCC__
17._IMC_67___
______________ACGG____CC____
18._IMC_67___
__CG____________CG________CC
19._IMC_67___
____GGAAACAC__ACCCGGATCCGGAA
20._IMC_67___
____GGAAACAC__ACCCGGATCCGGAA
21._IMC_67___
____GGAAACAC__ACCCGGATCCGGAA
22._IMC_67___
____GGAAACAC__ACCCGGATCCGGAA
23._IMC_67___
____AACCAACC__CCGGGGATCCAAAG
 85 86 87 88 89 90 91        
_Input profile
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
1._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
2._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
3._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
4._IMC_67___
CCCTAACCCTGTCTX_XX_XX_XX_XX_XX_XX_X
5._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
6._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
7._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
8._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
9._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
10._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
11._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
12._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
13._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
14._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
15._IMC_67___
CC__AA__CTGTCTX_XX_XX_XX_XX_XX_XX_X
16._IMC_67___
____AACCCTGT__X_XX_XX_XX_XX_XX_XX_X
17._IMC_67___
CC____CC__GT__X_XX_XX_XX_XX_XX_XX_X
18._IMC_67___
______________X_XX_XX_XX_XX_XX_XX_X
19._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
20._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
21._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
22._IMC_67___
__AG____AGACAGX_XX_XX_XX_XX_XX_XX_X
23._IMC_67___
__AG____AGAAAGX_XX_XX_XX_XX_XX_XX_X

Input profile: IMC_67 GC-05-82-2-33

 
Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL4
Notes: PL4 FP3
 Mars, 2018

1._IMC_67 GC-05-082-2-33

identical
90 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

2._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL3
Notes: PL3 FP5
 Mars, 2018

3._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

4._IMC_67 GC-05-82-2-33

identical
89 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

5._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 2 > FP
 Dapeng Zhang, 2016

6._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 5 > FP
 Dapeng Zhang, 2016

7._IMC_67

identical
39 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 4 > FP
 Dapeng Zhang, 2016

8._IMC_67

identical
39 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

9._IMC_67

identical
39 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

10._IMC_67

identical
39 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P55
 Dapeng Zhang, 2016

11._IMC_67

identical
39 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1/Rep 19 C0176
 Dapeng Zhang, 2016

12._IMC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 1 > FP
 Dapeng Zhang, 2016

13._IMC_67

identical
38 shared markers

Mars Center for Cocoa Science, Brazil
Location: 5233 3 > FP
 Dapeng Zhang, 2016

14._IMC_67 RUQ_1056

98.7 %
39 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

15._IMC_67

98.7 %
39 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 647
 Dapeng Zhang, 2016

16._IMC_67 RUQ_1056

95.2 %
42 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

17._IMC_67 RUQ_1056

90 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

18._IMC_67 IMC67

70 %
25 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

19._IMC_67 GC-05-82-2-33

49.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

20._IMC_67 GC-05-82-2-33

49.4 %
78 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 5, Block: 2, Rep: 33, Tree: 1 > FP1
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

21._IMC_67 RUQ_1056

49.4 %
78 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

22._IMC_67 IMC_67_Fld#_152A_Plt#_1

49.4 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 152A, Tree: 1
 Mars, 2018

23._IMC_67 IMC_67_Fld#_152B_Plt#_4

39.7 %
78 shared markers

USDA-TARS, United States of America
Location: Field: 152B, Tree: 4
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1075 2TcSNP1350 3TcSNP534 4TcSNP591 5TcSNP42
6TcSNP418 7TcSNP702 8TcSNP1096 9TcSNP1060 10TcSNP1165
11TcSNP429 12TcSNP75 13TcSNP891 14TcSNP122 15TcSNP316
16TcSNP521 17TcSNP1062 18TcSNP836 19TcSNP878 20TcSNP929
21TcSNP413 22TcSNP653 23TcSNP1149 24TcSNP174 25TcSNP32
26TcSNP372 27TcSNP448 28TcSNP872 29TcSNP953 30TcSNP1034
31TcSNP1175 32TcSNP1111 33TcSNP577 34TcSNP90 35TcSNP998
36TcSNP150 37TcSNP28 38TcSNP751 39TcSNP1484 40TcSNP602
41TcSNP561 42TcSNP497 43TcSNP894 44TcSNP1063 45TcSNP1126
46TcSNP1270 47TcSNP606 48TcSNP329 49TcSNP689 50TcSNP944
51TcSNP1242 52TcSNP1383 53TcSNP547 54TcSNP776 55TcSNP1309
56TcSNP151 57TcSNP1520 58TcSNP799 59TcSNP899 60TcSNP226
61TcSNP1439 62TcSNP1442 63TcSNP193 64TcSNP25 65TcSNP364
66TcSNP144 67TcSNP230 68TcSNP560 69TcSNP723 70TcSNP731
71TcSNP701 72TcSNP1041 73TcSNP917 74Tcm003s01336581 75Tcm001s00947643
76Tcm006s26664133 77Tcm002s20575712 78TcSNP529 79TcSNP1458 80TcSNP60
81TcSNP430 82TcSNP823 83TcSNP619 84TcSNP994 85TcSNP1144
86TcSNP1156 87TcSNP469 88TcSNP999 89TcSNP242 90TcSNP1253
91TcSNP1414