SNP Profiles of MAN 15 /2 [BRA]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGCTTTAGCTCGCTCTGGCCAGGTAACT
1._RUQ_86
CG______CT__CTCT__GG________
2._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
3._MAN_15_/2_[BRA]
CG______CT____CT__GG________
4._RUQ_86
CGCTTTAGCT____TTCCGG______CT
5._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
6._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
7._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
8._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
9._GC-05-072-2-23
CGCTTTAGCTCGCTCTCCGGAAGTAACT
10._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
11._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
12._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
13._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
14._MAN_15_/2_[BRA]
CG______CT__CTCT__GG________
15._RUQ_86
CG________________GG______CT
16._MAN_15_/2_[BRA]
GG______CC__TTCC__GG________
17._RUQ_86
CGAG__AGAG__AGAG__CCAGAC__AG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
ACCGCCCTAAGGAGCGACGGCTCCX_XX_X
1._RUQ_86
ACGG____AA__AGCGAC__CTCCX_XX_X
2._MAN_15_/2_[BRA]
ACGG____AA__AGCGAC__CTCCX_XX_X
3._MAN_15_/2_[BRA]
ACGG____AA__AGCGAC__CTCCX_XX_X
4._RUQ_86
ACCG____AAGGAGCGACGGCTCCX_XX_X
5._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
6._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
7._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
8._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
9._GC-05-072-2-23
ACCGCGCTAAGGAACGAAGGCCCCX_XX_X
10._MAN_15_/2_[BRA]
ACCG____AA__AACGAA__CCCCX_XX_X
11._MAN_15_/2_[BRA]
ACCG____AA__AACGAA__CCCCX_XX_X
12._MAN_15_/2_[BRA]
ACCG____AA__AACGAA__CCCCX_XX_X
13._MAN_15_/2_[BRA]
ACCG____AA__AACGAA__CCCCX_XX_X
14._MAN_15_/2_[BRA]
ACCG____AA__AACGAA__CCCCX_XX_X
15._RUQ_86
ACGG________AG________CCX_XX_X
16._MAN_15_/2_[BRA]
AACG____AA__GGCGAC__CTCCX_XX_X
17._RUQ_86
ACCGCGAGAAGGAGCGACGGAGCCX_XX_X

Input profile: MAN_15_/2_[BRA] MAN15/2[BRA]

 
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Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

1._MAN_15_/2_[BRA] RUQ_86

88.5 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
 Dapeng Zhang, 2016

2._MAN_15_/2_[BRA]

88.5 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0297
 Dapeng Zhang, 2016

3._MAN_15_/2_[BRA]

87.5 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 5A N3/476 T2
 Dapeng Zhang, 2016

4._MAN_15_/2_[BRA] RUQ_86

86.8 %
19 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

5._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP4
 Mars, 2018

6._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

7._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP3
 Mars, 2018

8._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP2
 Mars, 2018

9._MAN_15_/2_[BRA] GC-05-072-2-23

82.7 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 5 > FP
 Dapeng Zhang, 2016

11._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 3 > FP
 Dapeng Zhang, 2016

12._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 2 > FP
 Dapeng Zhang, 2016

13._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 1 > FP
 Dapeng Zhang, 2016

14._MAN_15_/2_[BRA]

80.8 %
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 5223 4
 Dapeng Zhang, 2016

15._MAN_15_/2_[BRA] RUQ_86

78.6 %
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Pur
0.590

16._MAN_15_/2_[BRA]

69.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: La Montaña Lot 6 Row 53 46-48
 Dapeng Zhang, 2016

17._MAN_15_/2_[BRA] RUQ_86

61.4 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144