SNP Profiles of UF 676   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CGCTATAGCTCCCTCCCGCGAGGTAGCC
1._UF_676
CG______CT__CTCC__CG________
2._UF_676
CG______CT__CTCC__CG________
3._UF_676
CG______CT__CTCC__CG________
4._UF_676
CG______CT__CTCC__CG________
5._UF_676
CG______CT__CTCC__CG________
6._RUQ_56
CG______CT__CTCC__CG________
7._UF_676
CG______CT__CTCC__CG________
8._RUQ_56
CG________________CG______CC
9._GC-08-080-2-03
CGCTATAGCTCCCTCCCGCGAAGTAGCC
10._GC-08-080-2-03
CGCTATAGCTCCCTCCCGCGAAGTAGCC
11._GC-08-080-2-03
CGCTATAGCTCCCTCCCGCGAAGTAGCC
12._GC-08-080-2-03
CGCTATAGCTCCCTCCCGCGAAGTAGCC
13._RUQ_56
CGCTATAGCT____CCCGCG______CC
14._UF_676
GG______CT__CTCC__CG________
15._RUQ_56
CGAG__AGAG__AGGG__CGAGAC__GG
16._MITC-000064
CGAG__AGAG__AGGG__CGAGAC__GG
17._UF_676_Fld#_180_Plt#_2
CGAG__AGAG__AGGG__CGAGAC__GG
 15 16 17 18 19 20 21 22 23 24 25 26   
_Input profile
ACCCCGCTATAGAGCGACAGCTACX_XX_X
1._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
2._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
3._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
4._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
5._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
6._RUQ_56
ACCC____AT__AGCGAC__CTACX_XX_X
7._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
8._RUQ_56
ACCC________AG________ACX_XX_X
9._GC-08-080-2-03
ACCCCGCTATAGAGCGACAGCTACX_XX_X
10._GC-08-080-2-03
ACCCCGCTATAGAGCGACAGCTACX_XX_X
11._GC-08-080-2-03
ACCCCGCTATAGAGCGACAGCTACX_XX_X
12._GC-08-080-2-03
ACCCCGCTATAGAGCGACAGCTACX_XX_X
13._RUQ_56
AACCCG__ATAGAGCGACAGCTACX_XX_X
14._UF_676
ACCC____AT__AGCGAC__CTACX_XX_X
15._RUQ_56
ACCCCGAGATAGAGCGACAGAGACX_XX_X
16._MITC-000064
ACCCCGAGATAGAGCGACAGAGACX_XX_X
17._UF_676_Fld#_180_Plt#_2
ACCCCGAGATAGAGCGACAGAGACX_XX_X

Input profile: UF_676 RUQ_56

 
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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._UF_676

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8203 7 > FP
 Dapeng Zhang, 2016

2._UF_676

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8203 5 > FP
 Dapeng Zhang, 2016

3._UF_676

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8203 4 > FP
 Dapeng Zhang, 2016

4._UF_676

identical
13 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 8203 3 > FP
 Dapeng Zhang, 2016

5._UF_676

identical
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

6._UF_676 RUQ_56

identical
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

7._UF_676

identical
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia
Location: C0245
 Dapeng Zhang, 2016

8._UF_676 RUQ_56

identical
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 
View Data
Ame
0.525 Cri
0.469

9._UF_676 GC-08-080-2-03

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6 > FP4
 Mars, 2018

10._UF_676 GC-08-080-2-03

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

11._UF_676 GC-08-080-2-03

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP2
 Mars, 2018

12._UF_676 GC-08-080-2-03

98.1 %
26 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2 > FP1
 Mars, 2018

13._UF_676 RUQ_56

97.5 %
20 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

14._UF_676

96.2 %
13 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 293 I-043
 Dapeng Zhang, 2016

15._UF_676 RUQ_56

63.6 %
22 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

16._UF_676 MITC-000064

63.6 %
22 shared markers

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USDA-SHRS, United States of America
 Mars, 2018

17._UF_676 UF_676_Fld#_180_Plt#_2

63.6 %
22 shared markers

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USDA-TARS, United States of America
Location: Field: 180, Tree: 2
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144