SNP Profiles of ICS95   View Data

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 Key

 1234567891011121314
_Input profile
CCCTATGGCTCCCTCCCGCGAGGTAGCT
1._RUQ_1144
________CT__CTCC__CG________
2._RUQ_1144
CGCTATGGCT____CCCGCG______CT
3._ICS_95
CG______CT__CTCC__CG________
4._ICS_95
CG______CT__CTCC__CG________
5._ICS_95
CG______CT__CTCC__CG________
6._ICS_95
CG______CT__CTCC__CG________
7._ICS_95
CG______CT__CTCC__CG________
8._ICS_95
CG______CT__CTCC__CG________
9._ICS_95
CG______CT__CTCC__CG________
10._ICS_95
CG______CT__CTCC__CG________
11._ICS_95
CG______CT__CTCC__CG________
12._ICS_95
CG______CT__CTCC__CG________
13._ICS_95
CG______CT__CTCC__CG________
14._ICS_95
CG______CT__CTCC__CG________
15._ICS_95
CG______CT__CTCC__CG________
16._ICS_95
CG______CT__CTCC__CG________
17._ICS_95
CG______CT__CTCC__CG________
18._ICS_95
CG______CT__CTCC__CG________
19._ICS_95
CG______CT__CTCC__CG________
20._ICS_95
CG______CT__CTCC__CG________
21._ICS_95
CG______CT__CTCC__CG________
22._ICS_95
CG______CT__CTCC__CG________
23._ICS_95
CG______CT__CTCC__CG________
24._ICS_95
CG______CT__CTCC__CG________
25._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
26._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
27._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
28._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
29._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
30._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
31._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
32._GC-02-2-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
33._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
34._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
35._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
36._GC-01-128-7-05
CGCTATGGCTCCCTCCCGCGAAGTAGCT
37._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
38._GC-02-002-1-02
CGCTATGGCTCCCTCCCGCGAAGTAGCT
39._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
40._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
41._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
42._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
43._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
44._GC-03-039-4-03
CGCTATGGCTCCCTCCCGCGAAGTAGCT
45._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
46._GC-03-040-4-04
CGCTATGGCTCCCTCCCGCGAAGTAGCT
47._GC-02-2-1-02
CGCTATGGCTCC__CCCGCGAAGTAGCT
48._GC-01-128-7-05
CGCTATGGCTCCCT__CGCGAAGTAGCT
49._ICS_95
CG______CT__CT____CG________
50._ICS_95
CG______CT__CTCC__CG________
51._ICS_95
CG______CT____CC__CG________
52._GC-02-2-1-02
CGCTATGG__CC__CCCGCGAAGTAGCT
53._GC-03-039-4-03
CGCTATGGCT__CTCCCGCGAAGTAGCT
54._ICS_95
CG____________CC__CG________
55._RUQ_1144B
CG________________CG______CT
56._ICS_95
GG______CT__CTCC__CG________
57._ICS_95
GG______CT__CTCC__CG________
58._ICS_95
GG______CT__CTCC__CG________
59._RUQ_1144
CG________________CG________
60._ICS_95
GG______CT__CTCC__CG________
61._GC-02-002-1-2
CCAG__GGAG__AGGG__CGAGAC__AG
62._RUQ_1144
CCAG__GGAG__AGGG__CGAGAC__AG
63._MITC-000342
CCAG__GGAG__AGGG__CGAGAC__AG
64._ICS_95_Fld#_13_Plt#_1
CCAG__GGAG__AGGG__CGAGAC__AG
 151617181920212223242526  
_Input profile
CCCCCGCTATAAGGCGACAGCTACX_XX_X
1._RUQ_1144
CCCC____AT__GGCGAC__CTACX_XX_X
2._RUQ_1144
CCCCCG__ATAAGGCGACAGCTACX_XX_X
3._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
4._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
5._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
6._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
7._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
8._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
9._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
10._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
11._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
12._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
13._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
14._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
15._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
16._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
17._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
18._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
19._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
20._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
21._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
22._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
23._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
24._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
25._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
26._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
27._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
28._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
29._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
30._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
31._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
32._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
33._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
34._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
35._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
36._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
37._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
38._GC-02-002-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
39._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
40._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
41._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
42._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
43._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
44._GC-03-039-4-03
CCCCCGCTATAAGGCGACAGCTACX_XX_X
45._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
46._GC-03-040-4-04
CCCCCGCTATAAGGCGACAGCTACX_XX_X
47._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
48._GC-01-128-7-05
CCCCCGCTATAAGGCGACAGCTACX_XX_X
49._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
50._ICS_95
CCCC____AT____CGAC__CTACX_XX_X
51._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
52._GC-02-2-1-02
CCCCCGCTATAAGGCGACAGCTACX_XX_X
53._GC-03-039-4-03
CCCCCGCTATAA__CGACAGCTACX_XX_X
54._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
55._RUQ_1144B
CCCC________GG________ACX_XX_X
56._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
57._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
58._ICS_95
CCCC____AT__GGCGAC__CTACX_XX_X
59._RUQ_1144
CCCC________GG________ACX_XX_X
60._ICS_95
CCCC____AT__GGGGAC__CTACX_XX_X
61._GC-02-002-1-2
CCCCCGAGATAAGGCGACAGAGACX_XX_X
62._RUQ_1144
CCCCCGAGATAAGGCGACAGAGACX_XX_X
63._MITC-000342
CCCCCGAGATAAGGCGACAGAGACX_XX_X
64._ICS_95_Fld#_13_Plt#_1
CCCCCGAGATAAGGCGACAGAGACX_XX_X

Input profile: ICS_95 RUQ_1144

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

1._ICS_95 RUQ_1144

identical
12 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

2._ICS_95 RUQ_1144

97.5 %
20 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 1
 Dapeng Zhang, 2016

4._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 13
 Dapeng Zhang, 2016

5._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 11
 Dapeng Zhang, 2016

6._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 9
 Dapeng Zhang, 2016

7._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 5
 Dapeng Zhang, 2016

8._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 3
 Dapeng Zhang, 2016

9._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 1
 Dapeng Zhang, 2016

10._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 14
 Dapeng Zhang, 2016

11._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 10
 Dapeng Zhang, 2016

12._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 7
 Dapeng Zhang, 2016

13._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 5
 Dapeng Zhang, 2016

14._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 3
 Dapeng Zhang, 2016

15._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 3 > FP
 Dapeng Zhang, 2016

16._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 2 > FP
 Dapeng Zhang, 2016

17._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 16
 Dapeng Zhang, 2016

18._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 9
 Dapeng Zhang, 2016

19._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 6
 Dapeng Zhang, 2016

20._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 5
 Dapeng Zhang, 2016

21._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 4
 Dapeng Zhang, 2016

22._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 3
 Dapeng Zhang, 2016

23._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 2
 Dapeng Zhang, 2016

24._ICS_95

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3404 15
 Dapeng Zhang, 2016

25._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

26._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

27._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

28._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

30._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

31._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL2
Notes: PL2 FP2
 Mars, 2018

32._ICS_95 GC-02-2-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL3
Notes: PL3 FP1
 Mars, 2018

33._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

34._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

35._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

36._ICS_95 GC-01-128-7-05

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

37._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

38._ICS_95 GC-02-002-1-02

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

39._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

40._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

41._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

42._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

43._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

44._ICS_95 GC-03-039-4-03

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

45._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

46._ICS_95 GC-03-040-4-04

96.2 %
26 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

47._ICS_95 GC-02-2-1-02

96 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL13
Notes: PL13 FP13
 Mars, 2018

48._ICS_95 GC-01-128-7-05

96 %
25 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

49._ICS_95

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1705 1
 Dapeng Zhang, 2016
Population Assignment: 
 Dapeng Zhang, 2016

50._ICS_95

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3403 12
 Dapeng Zhang, 2016

51._ICS_95

95.8 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 13 > F
 Dapeng Zhang, 2016

52._ICS_95 GC-02-2-1-02

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: PL1
Notes: PL1 FP4
 Mars, 2018

53._ICS_95 GC-03-039-4-03

95.8 %
24 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

54._ICS_95

95.5 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 2102 1 > FP
 Dapeng Zhang, 2016

55._ICS_95 RUQ_1144B

92.9 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

56._ICS_95

92.3 %
13 shared markers

Estation Experimental Tropical Pichilingue, Ecuador
 Dapeng Zhang, 2016

57._ICS_95

92.3 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P26 56
 Dapeng Zhang, 2016

58._ICS_95

92.3 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Row 10 C0204 2A
 Dapeng Zhang, 2016

59._ICS_95 RUQ_1144

91.7 %
6 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

60._ICS_95

88.5 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: San Juan Block1
 Dapeng Zhang, 2016

61._ICS_95 GC-02-002-1-2

63.6 %
22 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 2, Block: 1, Rep: 2, Tree: 13 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

62._ICS_95 RUQ_1144

63.6 %
22 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

63._ICS_95 MITC-000342

63.6 %
22 shared markers

USDA-SHRS, United States of America
 Mars, 2018

64._ICS_95 ICS_95_Fld#_13_Plt#_1

63.6 %
22 shared markers

USDA-TARS, United States of America
Location: Field: 13, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1458 2TcSNP1439 3TcSNP1126 4TcSNP1111 5TcSNP1060
6TcSNP1041 7TcSNP994 8TcSNP891 9TcSNP878 10TcSNP872
11TcSNP860 12TcSNP751 13TcSNP606 14TcSNP602 15TcSNP591
16TcSNP577 17TcSNP448 18TcSNP413 19TcSNP372 20TcSNP364
21TcSNP230 22TcSNP226 23TcSNP193 24TcSNP174 25TcSNP151
26TcSNP144