SNP Profiles of ICS 6 View Data

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_Input profile	TT	TT	CG	GG	GG	TT	TT	TT	AA	GT	TT	TT	AA	CT
1._RUQ_721	__	__	CG	__	__	__	__	TT	__	__	__	__	__	__
2._RUQ_721	__	__	CG	__	__	__	__	TT	__	__	CT	__	AA	__
3._ICS_6	__	__	GG	__	__	__	__	TT	__	__	__	__	AA	__
4._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
5._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
6._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
7._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
8._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
9._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
10._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
11._ICS_6	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
12._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
13._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
14._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
15._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
16._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
17._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
18._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
19._GC-08-049-1-60	__	__	CG	__	__	__	__	GT	__	__	CT	__	AA	__
20._RUQ_721	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__
21._GC-08-49-1-60	__	__	CC	__	__	__	__	AA	__	__	__	__	AA	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AT	CT	CT	AA	CG	AG	CC	TT	AA	CC	TT	CT	GG	GG
1._RUQ_721	__	__	__	AA	__	__	CC	__	__	CC	__	__	GG	GG
2._RUQ_721	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
3._ICS_6	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
4._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
5._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
6._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
7._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
8._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
9._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
10._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
11._ICS_6	__	__	__	AA	__	__	CG	__	__	__	__	__	__	GT
12._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
13._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
14._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
15._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
16._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
17._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
18._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
19._GC-08-049-1-60	__	__	CT	AA	__	GG	CG	GG	__	CC	__	__	AG	GT
20._RUQ_721	__	__	__	AA	__	AG	GG	CC	__	CC	__	__	GG	CC
21._GC-08-49-1-60	__	__	__	AA	__	GG	CG	CC	__	CC	__	__	AG	AC

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	TT	CG	AG	CG	AA	TT	CC	AC	AT	CC	AG	CC	CT	CC
1._RUQ_721	TT	__	__	__	__	__	CC	AA	__	CC	__	CC	__	__
2._RUQ_721	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
3._ICS_6	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
4._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
5._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
6._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
7._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
8._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
9._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
10._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
11._ICS_6	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__	__
12._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
13._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
14._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
15._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
16._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
17._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
18._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
19._GC-08-049-1-60	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__	__
20._RUQ_721	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__	__
21._GC-08-49-1-60	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CT	AC	GG	AA	TT	GG	TT	AG	CT	CC	AT	TT	TT	AC
1._RUQ_721	__	__	GG	__	__	GG	__	__	__	CC	__	__	__	__
2._RUQ_721	__	__	__	__	__	GG	__	__	__	CC	__	__	__	__
3._ICS_6	__	__	__	__	__	GG	__	__	__	CC	__	__	__	__
4._ICS_6	__	__	__	__	__	__	__	__	__	AC	__	__	__	__
5._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
6._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
7._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
8._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
9._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
10._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
11._ICS_6	__	__	__	__	__	AG	__	__	__	AC	__	__	__	__
12._GC-08-049-1-60	__	__	AG	__	__	__	__	__	__	AC	__	__	__	__
13._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
14._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
15._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
16._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
17._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
18._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
19._GC-08-049-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__
20._RUQ_721	__	__	GG	__	__	GG	__	__	__	CC	__	__	__	__
21._GC-08-49-1-60	__	__	AG	__	__	AG	__	__	__	AC	__	__	__	__

	57	58	59
_Input profile	CC	CC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_721	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_721	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._ICS_6	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-08-049-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._RUQ_721	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-08-49-1-60	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: ICS_6 RUQ_721

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.696 Cri
0.299

1._ICS_6 RUQ_721

96.7 %
15 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

2._ICS_6 RUQ_721

96.2 %
13 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

3._ICS_6

95.8 %
12 shared markers

View View all Clone Any

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: 6B E281 T2

Dapeng Zhang, 2016

4._ICS_6

75 %
12 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 6

Dapeng Zhang, 2016

5._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 1

Dapeng Zhang, 2016

6._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 4

Dapeng Zhang, 2016

7._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 5

Dapeng Zhang, 2016

8._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 8

Dapeng Zhang, 2016

9._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 9

Dapeng Zhang, 2016

10._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 11

Dapeng Zhang, 2016

11._ICS_6

73.1 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8160 2 > FP

Dapeng Zhang, 2016

12._ICS_6 GC-08-049-1-60

70 %
20 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

13._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 11

Notes: 11

14._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 9

Notes: 9

15._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 8

Notes: 8

16._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

17._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4

18._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP2

19._ICS_6 GC-08-049-1-60

69 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

20._ICS_6 RUQ_721

67.6 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

21._ICS_6 GC-08-49-1-60

55.9 %
17 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 8, Block: 1, Rep: 60, Tree: 2 > FP2

Notes: Brazil_Selections_Poss_grandparent

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13