SNP Profiles of SCA 6   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AACTCCAAAAGGGGAAGGCCCTGGCCAA
1._RUQ_234B
AACTCCAAAAGGGGAAGGCCCTGGCCAA
2._SCA_6
____CC______GG____CC__GG____
3._RUQ_234
____CC______GG____CC__GG____
4._SCA_6
____CC______GG____CC__GG____
5._SCA_6
____CC______GG____CC__GG____
6._SCA_6
____CC______GG____CC__GG____
7._SCA_6
____CC______GG____CC__GG____
8._SCA_6
____CC______GG____CC__GG____
9._GC-01-026-2-03
____CC______GG____CC__GG____
10._RUQ_234
____CC______GG______________
11._SCA_6
____CC______GG____CC__GG____
12._SCA_6
____CC______GG____CC__GG____
13._SCA_6
____CC______GG____CC__GG____
14._SCA_6
____CC______GG____CC__GG____
15._SCA_6
____CC______GG____CC__GG____
16._SCA_6
____CC______GG____CC__GG____
17._SCA_6
____CC______GG____CC__GG____
18._SCA_6
____CC______GG____CC__GG____
19._SCA_6
____CC______GG____CC__GG____
20._SCA_6
____CC______GG____CC__GG____
21._SCA_6
____CC______GG____CC__GG____
22._SCA_6
____CC______GG____CC__GG____
23._SCA_6
____CC______GG____CC__GG____
24._SCA_6
____CC______GG____CC__GG____
25._SCA_6
____CC______GG____CC__GG____
26._SCA_6
____CC______GG____CC__GG____
27._SCA_6
____CC______GG____CC__GG____
28._GC-01-26-2-03
____CC______GG____CC__GG____
29._GC-01-026-2-03
____CC______GG____CC__GG____
30._GC-01-026-2-03
____CC______GG____CC__GG____
31._GC-01-026-2-03
____CC______GG____CC__GG____
32._GC-01-026-2-03
____CC______GG____CC__GG____
33._GC-01-026-2-03
____CC______GG____CC__GG____
34._GC-01-026-2-03
____CC______GG____CC__GG____
35._GC-01-026-2-03
____CC______GG____CC__GG____
36._GC-01-026-2-03
____CC______GG____CC__GG____
37._GC-01-026-2-03
____CC______GG____CC__GG____
38._GC-01-026-2-03
____CC______GG____CC__GG____
39._GC-01-026-2-03
____CC______GG____CC__GG____
40._GC-01-26-2-03
____CC______GG____CC__GG____
41._GC-01-26-2-03
____CC______GG____CC__GG____
42._GC-01-26-2-03
____CC______GG____CC__GG____
43._GC-01-026-2-03
____CC______GG____CC__GG____
44._RUQ_234
____GG______CC________GG____
45._MITC-000343
____GG______CC________GG____
46._MITC-000344
____GG______CC________GG____
47._MITC-000345
____GG______CC________GG____
48._MITC-000347
____GG______CC________GG____
49._MITC-000348
____GG______CC________GG____
50._MITC-000349
____GG______CC________GG____
51._MITC-000376
____GG______CC________GG____
52._MITC-000452
____GG______CC________GG____
53._SCA6
____GG______________________
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
____CG______AC________AG____
55._SCA_6_Fld#_16_Plt#_1
____CG______AC________AG____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
TTCCAAGGGGCCCCTTCCTTCCAAGGCT
1._RUQ_234B
TTCCAAGGGGCCCCTTCCTTCCAAGGCT
2._SCA_6
____AA____CC____________GG__
3._RUQ_234
____AA____CC____________GG__
4._SCA_6
____AA____CC____________GG__
5._SCA_6
____AA____CC____________GG__
6._SCA_6
____AA____CC____________GG__
7._SCA_6
____AA____CC____________GG__
8._SCA_6
____AA____CC____________GG__
9._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGG__
10._RUQ_234
__CCAA____CC____CC____AAGGCT
11._SCA_6
____AA____CC____________GG__
12._SCA_6
____AA____CC____________GG__
13._SCA_6
____AA____CC____________GG__
14._SCA_6
____AA____CC____________GG__
15._SCA_6
____AA____CC____________GG__
16._SCA_6
____AA____CC____________GG__
17._SCA_6
____AA____CC____________GG__
18._SCA_6
____AA____CC____________GG__
19._SCA_6
____AA____CC____________GG__
20._SCA_6
____AA____CC____________GG__
21._SCA_6
____AA____CC____________GG__
22._SCA_6
____AA____CC____________GG__
23._SCA_6
____AA____CC____________GG__
24._SCA_6
____AA____CC____________GG__
25._SCA_6
____AA____CC____________GG__
26._SCA_6
____AA____CC____________GG__
27._SCA_6
____AA____CC____________GG__
28._GC-01-26-2-03
__CCAA__GGCCCC__CC____AAGGTT
29._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
30._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
31._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
32._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
33._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
34._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
35._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
36._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
37._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
38._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
39._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
40._GC-01-26-2-03
__CCAA__GGCCCC__CC____AAGGTT
41._GC-01-26-2-03
__CCAA__GGCCCC__CC____AAGGTT
42._GC-01-26-2-03
__CCAA__GGCCCC__CC____AAGGTT
43._GC-01-026-2-03
__CCAA__GGCCCC__CC____AAGGTT
44._RUQ_234
____AA__GGGGGG__CC____AACC__
45._MITC-000343
____AA__GGGGGG__CC____AACC__
46._MITC-000344
____AA__GGGGGG__CC____AACC__
47._MITC-000345
____AA__GGGGGG__CC____AACC__
48._MITC-000347
____AA__GGGGGG__CC____AACC__
49._MITC-000348
____AA__GGGGGG__CC____AACC__
50._MITC-000349
____AA__GGGGGG__CC____AACC__
51._MITC-000376
____AA__GGGGGG__CC____AACC__
52._MITC-000452
____AA__GGGGGG__CC____AACC__
53._SCA6
__________GG________________
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
____AG__AGCGCG__AC____AGCC__
55._SCA_6_Fld#_16_Plt#_1
____AG__AGCGCG__AC____AGCC__
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCAGCCGGTTCCCCAACGAGAACCAACT
1._RUQ_234B
CCAGCCGGTTCCCCAACGAGAACCAACT
2._SCA_6
__AG________CC__CG__AA______
3._RUQ_234
__AG________CC__CG__AA______
4._SCA_6
__AG________CC__CG__AA______
5._SCA_6
__AG________CC__CG__AA______
6._SCA_6
__AG________CC__CG__AA______
7._SCA_6
__AG________CC__CG__AA______
8._SCA_6
__AG________CC__CG__AA______
9._GC-01-026-2-03
__AA______CCCC__CG__AA______
10._RUQ_234
__________CCCC__CG__AA______
11._SCA_6
__AA________CC__CG__AA______
12._SCA_6
__AA________CC__CG__AA______
13._SCA_6
__AA________CC__CG__AA______
14._SCA_6
__AA________CC__CG__AA______
15._SCA_6
__AA________CC__CG__AA______
16._SCA_6
__AA________CC__CG__AA______
17._SCA_6
__AA________CC__CG__AA______
18._SCA_6
__AA________CC__CG__AA______
19._SCA_6
__AA________CC__CG__AA______
20._SCA_6
__AA________CC__CG__AA______
21._SCA_6
__AA________CC__CG__AA______
22._SCA_6
__AA________CC__CG__AA______
23._SCA_6
__AA________CC__CG__AA______
24._SCA_6
__AA________CC__CG__AA______
25._SCA_6
__AA________CC__CG__AA______
26._SCA_6
__AA________CC__CG__AA______
27._SCA_6
__AA________CC__CG__AA______
28._GC-01-26-2-03
__AA______CCCC__CG__AA______
29._GC-01-026-2-03
__AA______CCCC__CG__AA______
30._GC-01-026-2-03
__AA______CCCC__CG__AA______
31._GC-01-026-2-03
__AA______CCCC__CG__AA______
32._GC-01-026-2-03
__AA______CCCC__CG__AA______
33._GC-01-026-2-03
__AA______CCCC__CG__AA______
34._GC-01-026-2-03
__AA______CCCC__CG__AA______
35._GC-01-026-2-03
__AA______CCCC__CG__AA______
36._GC-01-026-2-03
__AA______CCCC__CG__AA______
37._GC-01-026-2-03
__AA______CCCC__CG__AA______
38._GC-01-026-2-03
__AA______CCCC__CG__AA______
39._GC-01-026-2-03
__AA______CCCC__CG__AA______
40._GC-01-26-2-03
__AA______CCCC__CG__AA______
41._GC-01-26-2-03
__AA______CCCC__CG__AA______
42._GC-01-26-2-03
__AA______CCCC__CG__AA______
43._GC-01-026-2-03
__AA______CCCC__CG__AA______
44._RUQ_234
__________GGCC__CG__AA______
45._MITC-000343
__________GGCC__CG__AA______
46._MITC-000344
__________GGCC__CG__AA______
47._MITC-000345
__________GGCC__CG__AA______
48._MITC-000347
__________GGCC__CG__AA______
49._MITC-000348
__________GGCC__CG__AA______
50._MITC-000349
__________GGCC__CG__AA______
51._MITC-000376
__________GGCC__CG__AA______
52._MITC-000452
__________GGCC__CG__AA______
53._SCA6
__________CCCC__CG__________
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__________AGAC__CG__AC______
55._SCA_6_Fld#_16_Plt#_1
__________AGAC__CG__AC______
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AAAAAATTAAGGAATTACAATTTTCCTT
1._RUQ_234B
AAAAAATTAAGGAATTACAATTTTCCTT
2._SCA_6
________AA______AC__________
3._RUQ_234
________AA______AC__________
4._SCA_6
________AA______AC__________
5._SCA_6
________AA______AC__________
6._SCA_6
________AA______AC__________
7._SCA_6
________AA______AC__________
8._SCA_6
________AA______AC__________
9._GC-01-026-2-03
__AA____AA______AC__________
10._RUQ_234
__AA____AA______CC__________
11._SCA_6
________AA______AC__________
12._SCA_6
________AA______AC__________
13._SCA_6
________AA______AC__________
14._SCA_6
________AA______AC__________
15._SCA_6
________AA______AC__________
16._SCA_6
________AA______AC__________
17._SCA_6
________AA______AC__________
18._SCA_6
________AA______AC__________
19._SCA_6
________AA______AC__________
20._SCA_6
________AA______AC__________
21._SCA_6
________AA______AC__________
22._SCA_6
________AA______AC__________
23._SCA_6
________AA______AC__________
24._SCA_6
________AA______AC__________
25._SCA_6
________AA______AC__________
26._SCA_6
________AA______AC__________
27._SCA_6
________AA______AC__________
28._GC-01-26-2-03
__AA____AA______AC__________
29._GC-01-026-2-03
__AA____AA______AC__________
30._GC-01-026-2-03
__AA____AA______AC__________
31._GC-01-026-2-03
__AA____AA______AC__________
32._GC-01-026-2-03
__AA____AA______AC__________
33._GC-01-026-2-03
__AA____AA______AC__________
34._GC-01-026-2-03
__AA____AA______AC__________
35._GC-01-026-2-03
__AA____AA______AC__________
36._GC-01-026-2-03
__AA____AA______AC__________
37._GC-01-026-2-03
__AA____AA______AC__________
38._GC-01-026-2-03
__AA____AA______AC__________
39._GC-01-026-2-03
__AA____AA______AC__________
40._GC-01-26-2-03
__AA____AA______AC__________
41._GC-01-26-2-03
__AA____AA______AC__________
42._GC-01-26-2-03
________AA______AC__________
43._GC-01-026-2-03
__GG____AA______AC__________
44._RUQ_234
__AA____AA______AC__________
45._MITC-000343
__AA____AA______AC__________
46._MITC-000344
__AA____AA______AC__________
47._MITC-000345
__AA____AA______AC__________
48._MITC-000347
__AA____AA______AC__________
49._MITC-000348
__AA____AA______AC__________
50._MITC-000349
__AA____AA______AC__________
51._MITC-000376
__AA____AA______AC__________
52._MITC-000452
__AA____AA______AC__________
53._SCA6
________AA______CC__________
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
__AG____AA______AA__________
55._SCA_6_Fld#_16_Plt#_1
__AG____AA______AA__________
 57 58             
_Input profile
AACCX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_234B
AACCX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._RUQ_234
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._RUQ_234
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._SCA_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-01-26-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
34._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
35._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
36._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
37._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
38._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
39._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
40._GC-01-26-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
41._GC-01-26-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
42._GC-01-26-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
43._GC-01-026-2-03
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
44._RUQ_234
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
45._MITC-000343
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
46._MITC-000344
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
47._MITC-000345
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
48._MITC-000347
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
49._MITC-000348
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
50._MITC-000349
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
51._MITC-000376
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
52._MITC-000452
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
53._SCA6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
54._SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
55._SCA_6_Fld#_16_Plt#_1
____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: SCA_6 RUQ_234

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._SCA_6 RUQ_234B

identical
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._SCA_6

identical
13 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria
 Dapeng Zhang, 2016

3._SCA_6 RUQ_234

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._SCA_6

identical
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P76 278
 Dapeng Zhang, 2016

5._SCA_6

identical
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P75 279
 Dapeng Zhang, 2016

6._SCA_6

identical
13 shared markers

Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia
Location: KW 268 I-022
 Dapeng Zhang, 2016

7._SCA_6

identical
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: C0267
 Dapeng Zhang, 2016

8._SCA_6

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 644
 Dapeng Zhang, 2016

9._SCA_6 GC-01-026-2-03

97.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

10._SCA_6 RUQ_234

96.9 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

11._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 9
 Dapeng Zhang, 2016

12._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 16 > F
 Dapeng Zhang, 2016

13._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 11 > F
 Dapeng Zhang, 2016

14._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 1 > FP
 Dapeng Zhang, 2016

15._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 15
 Dapeng Zhang, 2016

16._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 14
 Dapeng Zhang, 2016

17._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 13
 Dapeng Zhang, 2016

18._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 10
 Dapeng Zhang, 2016

19._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 7 > FP
 Dapeng Zhang, 2016

20._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 8
 Dapeng Zhang, 2016

21._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 6
 Dapeng Zhang, 2016

22._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 5
 Dapeng Zhang, 2016

23._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 1
 Dapeng Zhang, 2016

24._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

25._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 2
 Dapeng Zhang, 2016

26._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 3
 Dapeng Zhang, 2016

27._SCA_6

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1203 4
 Dapeng Zhang, 2016

28._SCA_6 GC-01-26-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL1
Notes: PL1 FP1
 Mars, 2018

29._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

30._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

31._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

32._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

33._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

34._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

35._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

36._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

37._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

38._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

39._SCA_6 GC-01-026-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: Dead
 Mars, 2018

40._SCA_6 GC-01-26-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL16
Notes: PL16 FP4
 Mars, 2018

41._SCA_6 GC-01-26-2-03

95.2 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL7
Notes: PL7 FP3
 Mars, 2018

42._SCA_6 GC-01-26-2-03

95 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 3, Tree: PL11
Notes: PL11 FP2
 Mars, 2018

43._SCA_6 GC-01-026-2-03

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

44._SCA_6 RUQ_234

64.7 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

45._SCA_6 MITC-000343

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

46._SCA_6 MITC-000344

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

47._SCA_6 MITC-000345

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

48._SCA_6 MITC-000347

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

49._SCA_6 MITC-000348

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

50._SCA_6 MITC-000349

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

51._SCA_6 MITC-000376

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

52._SCA_6 MITC-000452

64.7 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

53._SCA_6 SCA6

64.3 %
7 shared markers

Center for Forestry Research and Technology Transfer, Vietnam
Location: CEFORTT
 Jocelyn De Wever et al., 2019

54._SCA_6 SCA_6_TC_(Penn_State)_Fld#_197_Plt#_6

47.1 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 197, Tree: 6
Notes: TARS_Cacao_collection
 Mars, 2018

55._SCA_6 SCA_6_Fld#_16_Plt#_1

47.1 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 16, Tree: 1
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1275 7TcSNP1253 8TcSNP1230 9TcSNP1205 10TcSNP1144
11TcSNP1112 12TcSNP1062 13TcSNP1053 14TcSNP1019 15TcSNP1010
16TcSNP999 17TcSNP998 18TcSNP945 19TcSNP899 20TcSNP872
21TcSNP836 22TcSNP835 23TcSNP823 24TcSNP800 25TcSNP739
26TcSNP731 27TcSNP723 28TcSNP702 29TcSNP660 30TcSNP645
31TcSNP644 32TcSNP642 33TcSNP640 34TcSNP602 35TcSNP591
36TcSNP589 37TcSNP577 38TcSNP546 39TcSNP529 40TcSNP522
41TcSNP519 42TcSNP421 43TcSNP363 44TcSNP329 45TcSNP305
46TcSNP290 47TcSNP230 48TcSNP194 49TcSNP189 50TcSNP176
51TcSNP144 52TcSNP143 53TcSNP131 54TcSNP52 55TcSNP49
56TcSNP33 57TcSNP19 58TcSNP13