SNP Profiles of UF 676 View Data

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	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	AT	CT	CG	GG	GG	TT	GG	GT	CC	AC	GT	CT	TT	AA
1._RUQ_56	__	__	CG	__	__	__	__	__	__	__	__	__	__	__
2._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
3._RUQ_56	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
4._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
5._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
6._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
7._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
8._UF_676	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
9._UF_676	__	__	GG	__	__	__	__	GT	__	__	__	CT	__	AA
10._RUQ_56	__	__	CG	__	__	__	__	GT	__	__	__	__	__	__
11._GC-08-080-2-03	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
12._GC-08-080-2-03	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
13._GC-08-080-2-03	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
14._GC-08-080-2-03	__	__	CG	__	__	__	__	GT	__	__	__	CT	__	AA
15._RUQ_56	__	__	CG	__	__	__	__	AA	__	__	__	__	__	AA
16._MITC-000064	__	__	CG	__	__	__	__	AA	__	__	__	__	__	AA
17._UF_676_Fld#_180_Plt#_2	__	__	CG	__	__	__	__	AA	__	__	__	__	__	AA

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	CC	AA	TT	CT	AG	CG	AG	CG	TT	AA	AC	CT	CT	AG
1._RUQ_56	__	__	__	__	__	__	__	CG	__	__	__	__	__	__
2._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
3._RUQ_56	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
4._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
5._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
6._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
7._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
8._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
9._UF_676	__	__	__	__	AG	__	__	CG	__	__	__	__	__	__
10._RUQ_56	__	__	__	CC	AG	__	__	CG	__	__	AC	__	__	AG
11._GC-08-080-2-03	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
12._GC-08-080-2-03	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
13._GC-08-080-2-03	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
14._GC-08-080-2-03	__	__	__	CT	AG	__	AG	CG	GG	__	AC	__	__	AG
15._RUQ_56	__	__	__	__	AG	__	AG	CG	CC	__	AC	__	__	AG
16._MITC-000064	__	__	__	__	AG	__	AG	CG	CC	__	AC	__	__	AG
17._UF_676_Fld#_180_Plt#_2	__	__	__	__	AG	__	AG	CG	CC	__	AC	__	__	AG

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	GT	CT	CG	AG	CG	AG	TT	CC	AC	AT	CC	AG	AC	CT
1._RUQ_56	__	__	__	__	__	__	__	CC	AC	__	CC	__	__	__
2._UF_676	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
3._RUQ_56	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
4._UF_676	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
5._UF_676	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
6._UF_676	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
7._UF_676	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
8._UF_676	GT	__	__	GG	__	__	__	__	AC	__	CC	__	CC	__
9._UF_676	GT	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__
10._RUQ_56	GT	CT	__	__	__	__	__	CC	AA	__	CC	__	CC	__
11._GC-08-080-2-03	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
12._GC-08-080-2-03	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
13._GC-08-080-2-03	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
14._GC-08-080-2-03	GT	CT	__	GG	__	__	__	CC	AC	__	CC	__	CC	__
15._RUQ_56	AC	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__
16._MITC-000064	AC	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__
17._UF_676_Fld#_180_Plt#_2	AC	__	__	__	__	__	__	GG	AC	__	CC	__	CC	__

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	AC	CC	AC	AG	AC	TT	AG	GG	AG	CT	AC	AT	GT	TT
1._RUQ_56	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
2._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
3._RUQ_56	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
4._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
5._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
6._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
7._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
8._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
9._UF_676	__	__	__	__	__	__	AG	__	__	__	AC	__	__	__
10._RUQ_56	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
11._GC-08-080-2-03	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
12._GC-08-080-2-03	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
13._GC-08-080-2-03	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
14._GC-08-080-2-03	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
15._RUQ_56	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
16._MITC-000064	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__
17._UF_676_Fld#_180_Plt#_2	__	__	__	AG	__	__	AG	__	__	__	AC	__	__	__

	57	58	59	60
_Input profile	AC	CT	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_56	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_56	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._UF_676	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._RUQ_56	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._GC-08-080-2-03	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._GC-08-080-2-03	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._GC-08-080-2-03	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-08-080-2-03	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._RUQ_56	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._MITC-000064	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._UF_676_Fld#_180_Plt#_2	__	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: UF_676 RUQ_56

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.525 Cri
0.469

1._UF_676 RUQ_56

identical
7 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Location: GBR207

Jocelyn De Wever et al., 2019

2._UF_676

96.2 %
13 shared markers

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Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

3._UF_676 RUQ_56

96.2 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

4._UF_676

96.2 %
13 shared markers

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Malaysian Cocoa Board (MCB), Malaysia

Location: C0245

Dapeng Zhang, 2016

5._UF_676

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 3 > FP

Dapeng Zhang, 2016

6._UF_676

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 4 > FP

Dapeng Zhang, 2016

7._UF_676

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 5 > FP

Dapeng Zhang, 2016

8._UF_676

92.3 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 8203 7 > FP

Dapeng Zhang, 2016

9._UF_676

92.3 %
13 shared markers

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Indonesian Coffee and Cocoa Research Institute (ICCRI), Indonesia

Location: KW 293 I-043

Dapeng Zhang, 2016

10._UF_676 RUQ_56

90.6 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

11._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6 > FP4

12._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 4

Notes: 4 > FP3

13._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3 > FP2

14._UF_676 GC-08-080-2-03

90.5 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2 > FP1

15._UF_676 RUQ_56

73.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

16._UF_676 MITC-000064

73.5 %
17 shared markers

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USDA-SHRS, United States of America

17._UF_676 UF_676_Fld#_180_Plt#_2

73.5 %
17 shared markers

View View all Clone Any

USDA-TARS, United States of America

Location: Field: 180, Tree: 2

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1237	10	TcSNP1230
11	TcSNP1205	12	TcSNP1144	13	TcSNP1112	14	TcSNP1062	15	TcSNP1053
16	TcSNP1019	17	TcSNP1010	18	TcSNP999	19	TcSNP998	20	TcSNP945
21	TcSNP899	22	TcSNP872	23	TcSNP836	24	TcSNP835	25	TcSNP823
26	TcSNP800	27	TcSNP739	28	TcSNP731	29	TcSNP723	30	TcSNP702
31	TcSNP660	32	TcSNP645	33	TcSNP644	34	TcSNP642	35	TcSNP640
36	TcSNP602	37	TcSNP591	38	TcSNP589	39	TcSNP577	40	TcSNP546
41	TcSNP529	42	TcSNP522	43	TcSNP519	44	TcSNP421	45	TcSNP363
46	TcSNP329	47	TcSNP305	48	TcSNP290	49	TcSNP230	50	TcSNP194
51	TcSNP189	52	TcSNP176	53	TcSNP144	54	TcSNP143	55	TcSNP131
56	TcSNP52	57	TcSNP49	58	TcSNP33	59	TcSNP19	60	TcSNP13