SNP Profiles of AMAZ 11 [CHA]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCCAAGGTTGGGGCCAAGGCCTTGG
1._LCT_EEN_163_/D___
____CC________GG____________
2._LCT_EEN_163_/D___
____CC________GG__________GG
3._LCT_EEN_163_/D___
____GG____________________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAATTCCAAGGGGCCCCTTCCTTCCAA
1._LCT_EEN_163_/D___
______CCAA____CC____CC____AA
2._LCT_EEN_163_/D___
________AA____CCCC__________
3._LCT_EEN_163_/D___
________AA__GGGGGG__CC____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
TTCCCCAACCAGTTCCCCAAGGAAAACC
1._LCT_EEN_163_/D___
TTCC__________CCCC__GG__AA__
2._LCT_EEN_163_/D___
TT____AA________CC__GG__AA__
3._LCT_EEN_163_/D___
AA____________GGCC__GG__AA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACCCACAAAATTAGGGAATTACAAGTGG
1._LCT_EEN_163_/D___
______AA____AG______AC______
2._LCT_EEN_163_/D___
____________AG______AC______
3._LCT_EEN_163_/D___
______AA____AG______AC______
 57 58 59 60           
_Input profile
CCTTAACTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._LCT_EEN_163_/D___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._LCT_EEN_163_/D___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._LCT_EEN_163_/D___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: LCT_EEN_163_/D RUQ_180

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._LCT_EEN_163_/D RUQ_180

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._LCT_EEN_163_/D

identical
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: 4A A 104 T1
 Dapeng Zhang, 2014

3._LCT_EEN_163_/D RUQ_180

68.8 %
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13