SNP Profiles of GU 144 /C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCGGGAATTGGTTTTAAGGCCCTGG
1._GU_125_/C___
____CG________TT____________
2._GU_125_/C___
____CG________TT______CC__GG
3._GU_125_/C___
____CG________TT______CC__GG
4._GU_125_/C___
____CC________TT______CC__GG
5._GU_125_/C___
____CC________TT______CC__GG
6._GU_125_/C___
____CC________TT______CC__GG
7._GU_125_/C___
____CC________TT______CC__GG
8._GU_125_/C___
____CC________TT______CC__GG
9._GU_125_/C___
____CC________TT______CC__GG
10._GU_125_/C___
____CC________TT______CC__GG
11._GU_125_/C___
____CC________TT______CC__GG
12._GU_125_/C___
____CC________TT______CC__GG
13._GU_125_/C___
____CC________TT______CC__GG
14._GU_125_/C___
____CC________TT______CC__GG
15._GU_125_/C___
____CC________TT______CC__GG
16._GU_125_/C___
____CC________TT______CC__GG
17._GU_125_/C___
____CG________AA__________GG
18._GU_125_/C___
____GG________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACCCCAGCCGGGGCTAAAATTTTAA
1._GU_125_/C___
______CCAG____GG____AA____AA
2._GU_125_/C___
________AG____GG____________
3._GU_125_/C___
________AG____GG____________
4._GU_125_/C___
______CCGG__GGGGGG__AA____AA
5._GU_125_/C___
______CCGG__GGGGGG__AA____AA
6._GU_125_/C___
______CCGG__GGGGGG__AA____AA
7._GU_125_/C___
______CCGG__GGGGGG__AA____AA
8._GU_125_/C___
______CCGG__GGGGGG__AA____AA
9._GU_125_/C___
______CCGG__GGGGGG__AA____AA
10._GU_125_/C___
________GG____GG____________
11._GU_125_/C___
________GG____GG____________
12._GU_125_/C___
________GG____GG____________
13._GU_125_/C___
________GG____GG____________
14._GU_125_/C___
________GG____GG____________
15._GU_125_/C___
________GG____GG____________
16._GU_125_/C___
________GG____GG____________
17._GU_125_/C___
________AG__GGCCCC__AA____AA
18._GU_125_/C___
________GG__GGCCCC__AA____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCCCAGCCGGCTCCACATCCAGAACC
1._GU_125_/C___
GGCC__________CCAC__CC__AA__
2._GU_125_/C___
GG____AG________AC__CC__AA__
3._GU_125_/C___
GG____AG________AC__CC__AA__
4._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
5._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
6._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
7._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
8._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
9._GU_125_/C___
GGCC__AA______CCCC__CC__AA__
10._GU_125_/C___
GG____AA________CC__CC__AA__
11._GU_125_/C___
GG____AA________CC__CC__AA__
12._GU_125_/C___
GG____AA________CC__CC__AA__
13._GU_125_/C___
GG____AA________CC__CC__AA__
14._GU_125_/C___
GG____AA________CC__CC__AA__
15._GU_125_/C___
GG____AA________CC__CC__AA__
16._GU_125_/C___
GG____AA________CC__CC__AA__
17._GU_125_/C___
CC____________GGAC__CC__AA__
18._GU_125_/C___
CC____________GGCC__CC__AA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
AACTAAGGAACCGGGGGGCCAAAATTGG
1._GU_125_/C___
______GG____GG______AA______
2._GU_125_/C___
____________GG______AA______
3._GU_125_/C___
____________GG______AA______
4._GU_125_/C___
______GG____GG______AA______
5._GU_125_/C___
______GG____GG______AA______
6._GU_125_/C___
______GG____GG______AA______
7._GU_125_/C___
______GG____GG______AA______
8._GU_125_/C___
______GG____GG______AA______
9._GU_125_/C___
______GG____GG______AA______
10._GU_125_/C___
____________GG______AA______
11._GU_125_/C___
____________GG______AA______
12._GU_125_/C___
____________GG______AA______
13._GU_125_/C___
____________GG______AA______
14._GU_125_/C___
____________GG______AA______
15._GU_125_/C___
____________GG______AA______
16._GU_125_/C___
____________GG______AA______
17._GU_125_/C___
______GG____GG______AA______
18._GU_125_/C___
______GG____GG______AA______
 57 58 59 60           
_Input profile
CCTTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_125_/C___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_125_/C RUQ_188

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_125_/C RUQ_188

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_125_/C RUQ_188

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_125_/C RUQ_188

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

5._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

6._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP3
 Mars, 2018

8._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

9._GU_125_/C GC-01-138-7-17

85.7 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

10._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 4 > FP
 Dapeng Zhang, 2016

11._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 3
 Dapeng Zhang, 2016

12._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 9
 Dapeng Zhang, 2016

13._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 11
 Dapeng Zhang, 2016

14._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 1 > FP
 Dapeng Zhang, 2016

15._GU_125_/C

84.6 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1717 10 > F
 Dapeng Zhang, 2016

16._GU_125_/C

84.6 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: Q6_EXT_2 20
 Dapeng Zhang, 2016

17._GU_125_/C RUQ_188

73.5 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

18._GU_125_/C GC-01-138-7-17

64.7 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 7, Rep: 17, Tree: 3
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13