SNP Profiles of GU 133/C   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCGGGAATTGGTTTTAAGGCCTTGG
1._RUQ_190
____CG________TT____________
2._RUQ_190
____CG________TT______CC__GG
3._GU_133_/C
____CG________TT______CC__GG
4._GU_133_/C
____CG________TT______CC__GG
5._GU_133_/C
____CG________TT______CC__GG
6._GU_133_/C
____CG________TT______CC__GG
7._GU_133_/C
____CG________TT______CC__GG
8._GU_133_/C
____CG________TT______CC__GG
9._GU_133_/C
____CG________TT______CC__GG
10._GU_133_/C
____CG________TT______CC__GG
11._GU_133_/C
____CG________TT______CC__GG
12._GU_133_/C
____CG________________CC__GG
13._GU_133_/C
____CG________________CC__GG
14._GC-08-164-4-07
____CG________TT______CC__GG
15._GC-08-164-4-07
____CG________TT______CC__GG
16._GC-08-164-4-07
____CG________TT______CC__GG
17._GC-08-164-4-07
____CG________TT______CC__GG
18._GC-01-116-6-13
____CG________TT______CC__GG
19._GC-01-116-6-13
____CG________TT______CC__GG
20._GC-01-116-6-13
____CG________TT______CC__GG
21._GC-08-164-4-07
____CG________________CC__GG
22._GC-08-164-4-07
____CG________TT______CC__GG
23._GC-01-116-6-13
____CG________TT______CC__GG
24._GC-01-116-6-13
____CG________________CC__GG
25._RUQ_190
____CG______________________
26._GC-01-116-6-13
____CG________AA__________GG
27._MITC-000670
____CG________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACCCCGGCCGGGGCCAAAATTTTAA
1._RUQ_190
______CCGG____GG____AA____AA
2._RUQ_190
________GG____GG____________
3._GU_133_/C
________GG____GG____________
4._GU_133_/C
________GG____GG____________
5._GU_133_/C
________GG____GG____________
6._GU_133_/C
________GG____GG____________
7._GU_133_/C
________GG____GG____________
8._GU_133_/C
________GG____GG____________
9._GU_133_/C
________GG____GG____________
10._GU_133_/C
________GG____GG____________
11._GU_133_/C
________GG____GG____________
12._GU_133_/C
________GG____GG____________
13._GU_133_/C
________GG____GG____________
14._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
15._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
16._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
17._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
18._GC-01-116-6-13
______CCGG__GGGGGG__AA____AA
19._GC-01-116-6-13
______CCGG__GGGGGG__AA____AA
20._GC-01-116-6-13
______CCGG__GGGGGG__AA____AA
21._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
22._GC-08-164-4-07
______CCGG__GGGGGG__AA____AA
23._GC-01-116-6-13
______CCGG__GGGGGG__AA____AA
24._GC-01-116-6-13
______CCGG__GGGGGG__AA____AA
25._RUQ_190
______________CC____________
26._GC-01-116-6-13
________GG__GGCCCC__AA____AA
27._MITC-000670
________GG__GGCCCC__AA____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCCCAACCAGCTCCACATCCAGAACC
1._RUQ_190
GGCC__________CCAC__CC__AA__
2._RUQ_190
GG____AA________AC__CC__AA__
3._GU_133_/C
GG____GG________AC__CC__AA__
4._GU_133_/C
GG____GG________AC__CC__AA__
5._GU_133_/C
GG____GG________AC__CC__AA__
6._GU_133_/C
GG____GG________AC__CC__AA__
7._GU_133_/C
GG____GG________AC__CC__AA__
8._GU_133_/C
GG____GG________AC__CC__AA__
9._GU_133_/C
GG____GG________AC__CC__AA__
10._GU_133_/C
GG____GG________AC__CC__AA__
11._GU_133_/C
GG____GG________AC__CC__AA__
12._GU_133_/C
GG____GG________AC__CC__AA__
13._GU_133_/C
GG____GG________AC__CC__AA__
14._GC-08-164-4-07
GGCC__GG______CCAC__CC__AA__
15._GC-08-164-4-07
GGCC__GG______CCAC__CC__AA__
16._GC-08-164-4-07
GGCC__GG______CCAC__CC__AA__
17._GC-08-164-4-07
GGCC__GG______CCAC__CC__AA__
18._GC-01-116-6-13
GGCC__GG______CCAC__CC__AA__
19._GC-01-116-6-13
GGCC__GG______CCAC__CC__AA__
20._GC-01-116-6-13
GGCC__GG______CCAC__CC__AA__
21._GC-08-164-4-07
GGCC__GG______CCAC__CC__AA__
22._GC-08-164-4-07
GG____GG______CCAC__CC__AA__
23._GC-01-116-6-13
GGCC__GG______CCAC__CC__AA__
24._GC-01-116-6-13
GGCC__GG______CCAC__CC__AA__
25._RUQ_190
______________CCAC__CC______
26._GC-01-116-6-13
CC____________GGAC__CC__AA__
27._MITC-000670
CC____________GGAC__CC__AA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACCCAAGGAACCGGGGGGCCAAAATTGG
1._RUQ_190
______GG____GG______AA______
2._RUQ_190
____________GG______AA______
3._GU_133_/C
____________GG______AA______
4._GU_133_/C
____________GG______AA______
5._GU_133_/C
____________GG______AA______
6._GU_133_/C
____________GG______AA______
7._GU_133_/C
____________GG______AA______
8._GU_133_/C
____________GG______AA______
9._GU_133_/C
____________GG______AA______
10._GU_133_/C
____________GG______AA______
11._GU_133_/C
____________________AA______
12._GU_133_/C
____________GG______AA______
13._GU_133_/C
____________________AA______
14._GC-08-164-4-07
______GG____GG______AA______
15._GC-08-164-4-07
______GG____GG______AA______
16._GC-08-164-4-07
______GG____GG______AA______
17._GC-08-164-4-07
______GG____GG______AA______
18._GC-01-116-6-13
______GG____GG______AA______
19._GC-01-116-6-13
______GG____GG______AA______
20._GC-01-116-6-13
______GG____GG______AA______
21._GC-08-164-4-07
______GG____GG______AA______
22._GC-08-164-4-07
______GG____GG______AA______
23._GC-01-116-6-13
______GG____________AA______
24._GC-01-116-6-13
______GG____________AA______
25._RUQ_190
____________GG______AA______
26._GC-01-116-6-13
______GG____GG______AA______
27._MITC-000670
______GG____GG______AA______
 57 58 59 60           
_Input profile
CCTTCCTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_190
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_190
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_133_/C
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-08-164-4-07
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._RUQ_190
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-01-116-6-13
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._MITC-000670
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_133_/C RUQ_190

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_133_/C RUQ_190

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_133_/C RUQ_190

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 2
 Dapeng Zhang, 2016

4._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 3 > FP
 Dapeng Zhang, 2016

5._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 9 > FP
 Dapeng Zhang, 2016

6._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 1
 Dapeng Zhang, 2016

7._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 2
 Dapeng Zhang, 2016

8._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 3
 Dapeng Zhang, 2016

9._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 8
 Dapeng Zhang, 2016

10._GU_133_/C

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 11
 Dapeng Zhang, 2016

11._GU_133_/C

91.7 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 1 > FP
 Dapeng Zhang, 2016

12._GU_133_/C

91.7 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 8407 10
 Dapeng Zhang, 2016

13._GU_133_/C

90.9 %
11 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1613 10 > F
 Dapeng Zhang, 2016

14._GU_133_/C GC-08-164-4-07

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

15._GU_133_/C GC-08-164-4-07

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

16._GU_133_/C GC-08-164-4-07

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

17._GU_133_/C GC-08-164-4-07

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

18._GU_133_/C GC-01-116-6-13

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP2
 Mars, 2018

19._GU_133_/C GC-01-116-6-13

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3 > FP4
 Mars, 2018

20._GU_133_/C GC-01-116-6-13

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

21._GU_133_/C GC-08-164-4-07

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._GU_133_/C GC-08-164-4-07

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

23._GU_133_/C GC-01-116-6-13

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

24._GU_133_/C GC-01-116-6-13

89.5 %
19 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP3
 Mars, 2018

25._GU_133_/C RUQ_190

85.7 %
7 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Location: GBR207
 Jocelyn De Wever et al., 2019

26._GU_133_/C GC-01-116-6-13

76.5 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 6, Rep: 13, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

27._GU_133_/C MITC-000670

76.5 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13