SNP Profiles of GU 125 /C   View Data

 Show/Hide Profiles

 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTGGGGAATTGGTTTTAAGTCCTTGG
1._GU_221_/C___
AATTGGGGAATTGGTT__AAGTCCTTGG
2._GU_221_/C___
____GG________TT____________
3._GU_221_/C___
____GG________TT______CC__GG
4._GU_221_/C___
____GG________TT______CC__GG
5._GU_221_/C___
____GG________TT______CC__GG
6._GU_221_/C___
____GG________TT______CC__GG
7._GU_221_/C___
____GG________TT______CC__GG
8._GU_221_/C___
____GG________TT______CC__GG
9._GU_221_/C___
____GG________TT______CC__GG
10._GU_221_/C___
____GG________TT______CC__GG
11._GU_221_/C___
____GG________TT______CC__GG
12._GU_221_/C___
____GG________TT______CC__GG
13._GU_221_/C___
____GG________TT______CC__GG
14._GU_221_/C___
____GG________TT______CC__GG
15._GU_221_/C___
____GG________TT______CC__GG
16._GU_221_/C___
____GG________TT______CC__GG
17._GU_221_/C___
____GG________TT______CC__GG
18._GU_221_/C___
____GG________TT______CC__GG
19._GU_221_/C___
____GG________TT______CC__GG
20._GU_221_/C___
____GG________TT______CC__GG
21._GU_221_/C___
____GG________TT______CC__GG
22._GU_221_/C___
____GG________TT______CC__GG
23._GU_221_/C___
____GG________TT______CC__GG
24._GU_221_/C___
____GG________TT______CC__GG
25._GU_221_/C___
____GG________TT______CC__GG
26._GU_221_/C___
____GG________TT______CC__GG
27._GU_221_/C___
____GG________TT______CC__GG
28._GU_221_/C___
____CC________TT______CC__GG
29._GU_221_/C___
____CC________TT______CC__GG
30._GU_221_/C___
____CC________TT______CC__GG
31._GU_221_/C___
____CC________TT______CC__GG
32._GU_221_/C___
____CC________AA__________GG
33._GU_221_/C___
____CC________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CTAACCCCAACCGGGGCCAAAATTTTAA
1._GU_221_/C___
CTAACCCCAACCGGGGCCAAAATTTTAA
2._GU_221_/C___
______CCAA____GG____AA____AA
3._GU_221_/C___
________AA____GG____________
4._GU_221_/C___
________AA____GG____________
5._GU_221_/C___
________AA____GG____________
6._GU_221_/C___
________AA____GG____________
7._GU_221_/C___
________AA____GG____________
8._GU_221_/C___
________AA____GG____________
9._GU_221_/C___
________AA____GG____________
10._GU_221_/C___
________AA____GG____________
11._GU_221_/C___
________AA____GG____________
12._GU_221_/C___
________AA____GG____________
13._GU_221_/C___
________AA____GG____________
14._GU_221_/C___
________AA____GG____________
15._GU_221_/C___
________AA____GG____________
16._GU_221_/C___
______CCAA__GGGGGG__AA____AA
17._GU_221_/C___
______CCAA__GGGGGG__AA____AA
18._GU_221_/C___
______CCAA__GGGGGG__AA____AA
19._GU_221_/C___
______CCAA__GGGGGG__AA____AA
20._GU_221_/C___
______CCAA__GGGGGG__AA____AA
21._GU_221_/C___
______CCAA__GGGGGG__AA____AA
22._GU_221_/C___
______CCAA__GGGGGG__AA____AA
23._GU_221_/C___
______CCAA__GGGGGG__AA____AA
24._GU_221_/C___
______CCAA__GGGGGG__AA____AA
25._GU_221_/C___
______CCAA__GGGGGG__AA____AA
26._GU_221_/C___
______CCAA__GGGGGG__AA____AA
27._GU_221_/C___
______CCAA__GGGGGG__AA______
28._GU_221_/C___
______CCGG__GGGGGG__AA____AA
29._GU_221_/C___
______CCGG__GGGGGG__AA____AA
30._GU_221_/C___
________GG____GG____________
31._GU_221_/C___
________GG____GG____________
32._GU_221_/C___
________AA__GGCCCC__AA____AA
33._GU_221_/C___
________AA__GGCCCC__AA____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCAACCAGCTCCACATCCAGAACTAC
1._GU_221_/C___
GGCCAACCAGCTCCACATCCAGAACTAC
2._GU_221_/C___
GGCC________CCAC__CC__AA____
3._GU_221_/C___
GG__AA________AC__CC__AA____
4._GU_221_/C___
GG__AG________AC__CC__AA____
5._GU_221_/C___
GG__AG________AC__CC__AA____
6._GU_221_/C___
GG__AG________AC__CC__AA____
7._GU_221_/C___
GG__AG________AC__CC__AA____
8._GU_221_/C___
GG__AG________AC__CC__AA____
9._GU_221_/C___
GG__AG________AC__CC__AA____
10._GU_221_/C___
GG__AG________AC__CC__AA____
11._GU_221_/C___
GG__AG________AC__CC__AA____
12._GU_221_/C___
GG__AG________AC__CC__AA____
13._GU_221_/C___
GG__AG________AC__CC__AA____
14._GU_221_/C___
GG__AG________AC__CC__AA____
15._GU_221_/C___
GG__AG________AC__CC__AA____
16._GU_221_/C___
GGCTAG______CCAC__CC__AA____
17._GU_221_/C___
GGCTAG______CCAC__CC__AA____
18._GU_221_/C___
GGCTAG______CCAC__CC__AA____
19._GU_221_/C___
GGCTAG______CCAC__CC__AA____
20._GU_221_/C___
GGCTAG______CCAC__CC__AA____
21._GU_221_/C___
GGCTAG______CCAC__CC__AA____
22._GU_221_/C___
GGCTAG______CCAC__CC__AA____
23._GU_221_/C___
GGCTAG______CCAC__CC__AA____
24._GU_221_/C___
GGCTAG______CCAC__CC__AA____
25._GU_221_/C___
GGCTAG______CCAC__CC__AA____
26._GU_221_/C___
GGCTAG______CCAC__CC__AA____
27._GU_221_/C___
GGCTAG______CCAC__CC__AA____
28._GU_221_/C___
GGCCAA______CCCC__CC__AA____
29._GU_221_/C___
GGCCAA______CCCC__CC__AA____
30._GU_221_/C___
GG__AA________CC__CC__AA____
31._GU_221_/C___
GG__AA________CC__CC__AA____
32._GU_221_/C___
CC__________GGAC__CC__AA____
33._GU_221_/C___
CC__________GGAC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTAAGGAACCGGGGGGCCAAAATTGGCC
1._GU_221_/C___
CTAAGGAACCGGGGGGCCAAAATTGGCC
2._GU_221_/C___
____GG____GG______AA________
3._GU_221_/C___
__________GG______AA________
4._GU_221_/C___
__________GG______AA________
5._GU_221_/C___
__________GG______AA________
6._GU_221_/C___
__________GG______AA________
7._GU_221_/C___
__________GG______AA________
8._GU_221_/C___
__________GG______AA________
9._GU_221_/C___
__________GG______AA________
10._GU_221_/C___
__________GG______AA________
11._GU_221_/C___
__________GG______AA________
12._GU_221_/C___
__________GG______AA________
13._GU_221_/C___
__________GG______AA________
14._GU_221_/C___
__________GG______AA________
15._GU_221_/C___
__________GG______AA________
16._GU_221_/C___
____GG____GG______AA________
17._GU_221_/C___
____GG____GG______AA________
18._GU_221_/C___
____GG____GG______AA________
19._GU_221_/C___
____GG____GG______AA________
20._GU_221_/C___
____GG____GG______AA________
21._GU_221_/C___
____GG____GG______AA________
22._GU_221_/C___
____GG____GG______AA________
23._GU_221_/C___
____GG____GG______AA________
24._GU_221_/C___
____GG____GG______AA________
25._GU_221_/C___
____GG____GG______AA________
26._GU_221_/C___
____GG____GG______AA________
27._GU_221_/C___
____GG____GG______AA________
28._GU_221_/C___
____GG____GG______AA________
29._GU_221_/C___
____GG____GG______AA________
30._GU_221_/C___
__________GG______AA________
31._GU_221_/C___
__________GG______AA________
32._GU_221_/C___
____GG____GG______AA________
33._GU_221_/C___
____GG____GG______AA________
 57 58 59            
_Input profile
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_221_/C___
TTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GU_221_/C___
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_221_/C RUQ_200B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_221_/C RUQ_200

identical
58 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

2._GU_221_/C RUQ_200

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

3._GU_221_/C RUQ_200

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

4._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 2
 Dapeng Zhang, 2016

5._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 6
 Dapeng Zhang, 2016

6._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 8
 Dapeng Zhang, 2016

7._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 9
 Dapeng Zhang, 2016

8._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 10
 Dapeng Zhang, 2016

9._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 12
 Dapeng Zhang, 2016

10._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 14
 Dapeng Zhang, 2016

11._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 16
 Dapeng Zhang, 2016

12._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 13 > F
 Dapeng Zhang, 2016

13._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

14._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 15 > F
 Dapeng Zhang, 2016

15._GU_221_/C

96.2 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 4 > FP
 Dapeng Zhang, 2016

16._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

17._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

18._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

19._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13 > FP3
 Mars, 2018

20._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

21._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

22._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

23._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

24._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

25._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

26._GU_221_/C GC-01-075-4-11

90.5 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15 > FP4
 Mars, 2018

27._GU_221_/C GC-01-075-4-11

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

28._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_221_/C GC-01-075-4-11

83.3 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

30._GU_221_/C

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 11
 Dapeng Zhang, 2016

31._GU_221_/C

80.8 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1411 1 > FP
 Dapeng Zhang, 2016

32._GU_221_/C GC-01-75-4-11

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 11, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

33._GU_221_/C RUQ_200

70.6 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13