SNP Profiles of GU 136/H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTGGGGAATTGGTTAAGGCCTTGGCC
1._RUQ_221
____GG________TT____________
2._RUQ_221
____GG________TT____CC__GG__
3._GU_136_/H
____GG________TT____CC__GG__
4._GU_136_/H
____GG________TT____CC__GG__
5._GU_136_/H
____GG________TT____CC__GG__
6._GU_136_/H
____GG________TT____CC__GG__
7._GU_136_/H
____GG________TT____CC__GG__
8._GU_136_/H
____GG________TT____CC__GG__
9._GU_136_/H
____GG________TT____CC__GG__
10._GU_136_/H
____GG________TT____CC__GG__
11._GU_136_/H
____GG________TT____CC__GG__
12._GU_136_/H
____GG________TT____CC__GG__
13._GU_136_/H
____GG________TT____CC__GG__
14._GU_136_/H
____GG________TT____CC__GG__
15._GU_136_/H
____GG________TT____CC__GG__
16._GU_136_/H
____GG________TT____CC__GG__
17._GU_136_/H
____GG______________CC__GG__
18._GC-03-019-2-08
____GG________TT____CC__GG__
19._GC-03-019-2-08
____GG________TT____CC__GG__
20._GC-03-019-2-08
____GG________TT____CC__GG__
21._GC-03-019-2-08
____GG________TT____CC__GG__
22._GC-03-019-2-08
____GG________TT____CC__GG__
23._GC-03-019-2-08
____GG________TT____CC__GG__
24._GC-03-019-2-08
____GG________TT____CC__GG__
25._GC-03-019-2-08
____GG________TT____CC__GG__
26._GC-03-019-2-08
____GG________TT____CC__GG__
27._GC-03-019-2-08
____GG________TT____CC__GG__
28._GC-03-019-2-08
____GG________TT____CC__GG__
29._GC-03-019-2-08
____GG________TT____CC__GG__
30._GC-03-019-2-08
____GG________TT____CC__GG__
31._GC-03-019-2-08
____GG________TT____CC__GG__
32._GC-03-019-2-08
____GG______________CC__GG__
33._GC-03-19-2-8
____CC________AA________GG__
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
AATTCCAACCGGGGCCAAAATTTTAAGG
1._RUQ_221
____CCAA____GG____AA____AAGG
2._RUQ_221
______AA____GG____________GG
3._GU_136_/H
______AA____GG____________GG
4._GU_136_/H
______AA____GG____________GG
5._GU_136_/H
______AA____GG____________GG
6._GU_136_/H
______AA____GG____________GG
7._GU_136_/H
______AA____GG____________GG
8._GU_136_/H
______AA____GG____________GG
9._GU_136_/H
______AA____GG____________GG
10._GU_136_/H
______AA____GG____________GG
11._GU_136_/H
______AA____GG____________GG
12._GU_136_/H
______AA____GG____________GG
13._GU_136_/H
______AA____GG____________GG
14._GU_136_/H
______AA____GG____________GG
15._GU_136_/H
______AA____GG____________GG
16._GU_136_/H
______AA____GG____________GG
17._GU_136_/H
______AA____GG____________GG
18._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
19._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
20._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
21._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
22._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
23._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
24._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
25._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
26._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
27._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
28._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
29._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
30._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
31._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
32._GC-03-019-2-08
____CCAA__GGGGGG__AA____AAGG
33._GC-03-19-2-8
______AA__GGCCCC__AA____AACC
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
CCCCAACCGGTTCCCCTTCCGGAACCAA
1._RUQ_221
CC__________CCCC__CC__AA____
2._RUQ_221
____AA________CC__CC__AA____
3._GU_136_/H
____GG________CC__CC__AA____
4._GU_136_/H
____GG________CC__CC__AA____
5._GU_136_/H
____GG________CC__CC__AA____
6._GU_136_/H
____GG________CC__CC__AA____
7._GU_136_/H
____GG________CC__CC__AA____
8._GU_136_/H
____GG________CC__CC__AA____
9._GU_136_/H
____GG________CC__CC__AA____
10._GU_136_/H
____GG________CC__CC__AA____
11._GU_136_/H
____GG________CC__CC__AA____
12._GU_136_/H
____GG________CC__CC__AA____
13._GU_136_/H
____GG________CC__CC__AA____
14._GU_136_/H
____GG________CC__CC__AA____
15._GU_136_/H
____GG________CC__CC__AA____
16._GU_136_/H
____GG________CC__CC__AA____
17._GU_136_/H
____GG________CC__CC__AA____
18._GC-03-019-2-08
____GG______CCCC__CC__AA____
19._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
20._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
21._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
22._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
23._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
24._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
25._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
26._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
27._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
28._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
29._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
30._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
31._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
32._GC-03-019-2-08
CT__GG______CCCC__CC__AA____
33._GC-03-19-2-8
____________GGCC__CC__AA____
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
TTAAGGAACCGGGGGGCCAAAATTGGCC
1._RUQ_221
____GG____GG______AA________
2._RUQ_221
__________GG______AA________
3._GU_136_/H
__________GG______AA________
4._GU_136_/H
__________GG______AA________
5._GU_136_/H
__________GG______AA________
6._GU_136_/H
__________GG______AA________
7._GU_136_/H
__________GG______AA________
8._GU_136_/H
__________GG______AA________
9._GU_136_/H
__________GG______AA________
10._GU_136_/H
__________GG______AA________
11._GU_136_/H
__________GG______AA________
12._GU_136_/H
__________GG______AA________
13._GU_136_/H
__________GG______AA________
14._GU_136_/H
__________GG______AA________
15._GU_136_/H
__________GG______AA________
16._GU_136_/H
__________GG______AA________
17._GU_136_/H
__________GG______AA________
18._GC-03-019-2-08
____GG____GG______AA________
19._GC-03-019-2-08
____GG____GG______AA________
20._GC-03-019-2-08
____GG____GG______AA________
21._GC-03-019-2-08
____GG____GG______AA________
22._GC-03-019-2-08
____GG____GG______AA________
23._GC-03-019-2-08
____GG____GG______AA________
24._GC-03-019-2-08
____GG____GG______AA________
25._GC-03-019-2-08
____GG____GG______AA________
26._GC-03-019-2-08
____GG____GG______AA________
27._GC-03-019-2-08
____GG____GG______AA________
28._GC-03-019-2-08
____GG____GG______AA________
29._GC-03-019-2-08
____GG____GG______AA________
30._GC-03-019-2-08
____GG____GG______AA________
31._GC-03-019-2-08
____GG____GG______AA________
32._GC-03-019-2-08
____GG____GG______AA________
33._GC-03-19-2-8
____GG____GG______AA________
 57 58 59            
_Input profile
TTAATTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_221
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._RUQ_221
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_136_/H
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
32._GC-03-019-2-08
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
33._GC-03-19-2-8
______X_XX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_136_/H RUQ_221

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_136_/H RUQ_221

identical
16 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

2._GU_136_/H RUQ_221

identical
13 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

3._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 1
 Dapeng Zhang, 2016

4._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 2
 Dapeng Zhang, 2016

5._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 3
 Dapeng Zhang, 2016

6._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 4
 Dapeng Zhang, 2016

7._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 5
 Dapeng Zhang, 2016

8._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 6
 Dapeng Zhang, 2016

9._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 8
 Dapeng Zhang, 2016

10._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 11
 Dapeng Zhang, 2016

11._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 12
 Dapeng Zhang, 2016

12._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 13
 Dapeng Zhang, 2016

13._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 16
 Dapeng Zhang, 2016

14._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 10 > F
 Dapeng Zhang, 2016

15._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 14 > F
 Dapeng Zhang, 2016

16._GU_136_/H

92.3 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 7 > FP
 Dapeng Zhang, 2016

17._GU_136_/H

91.7 %
12 shared markers

Mars Center for Cocoa Science, Brazil
Location: 3208 9 > FP
 Dapeng Zhang, 2016

18._GU_136_/H GC-03-019-2-08

90 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

19._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

20._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

21._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

22._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

23._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

24._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

25._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

26._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

27._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10 > FP2
 Mars, 2018

28._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

29._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

30._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

31._GU_136_/H GC-03-019-2-08

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

32._GU_136_/H GC-03-019-2-08

87.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

33._GU_136_/H GC-03-19-2-8

70.6 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 2, Rep: 8, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1230 10TcSNP1205
11TcSNP1144 12TcSNP1112 13TcSNP1062 14TcSNP1053 15TcSNP1019
16TcSNP1010 17TcSNP999 18TcSNP998 19TcSNP945 20TcSNP899
21TcSNP872 22TcSNP836 23TcSNP835 24TcSNP823 25TcSNP800
26TcSNP739 27TcSNP731 28TcSNP723 29TcSNP702 30TcSNP660
31TcSNP645 32TcSNP644 33TcSNP642 34TcSNP640 35TcSNP602
36TcSNP591 37TcSNP589 38TcSNP577 39TcSNP546 40TcSNP529
41TcSNP522 42TcSNP519 43TcSNP421 44TcSNP363 45TcSNP329
46TcSNP305 47TcSNP290 48TcSNP230 49TcSNP194 50TcSNP189
51TcSNP176 52TcSNP144 53TcSNP143 54TcSNP131 55TcSNP52
56TcSNP49 57TcSNP33 58TcSNP19 59TcSNP13