SNP Profiles of GU-296H   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
AATTCGGGAATTGGTTTTAATTCCTTGG
1._GU_296_/H___
____CG________TT______CC__GG
2._GU_296_/H___
____CG________TT______CC__GG
3._GU_296_/H___
____CG________TT______CC__GG
4._GU_296_/H___
____CG________TT______CC__GG
5._GU_296_/H___
____CG________TT______CC__GG
6._GU_296_/H___
____CG________TT______CC__GG
7._GU_296_/H___
____CG________TT______CC__GG
8._GU_296_/H___
____CG________TT______CC__GG
9._GU_296_/H___
____CG________TT______CC__GG
10._GU_296_/H___
____CG________TT______CC__GG
11._GU_296_/H___
____CG________TT______CC__GG
12._GU_296_/H___
____CG________TT______CC__GG
13._GU_296_/H___
____CG________TT______CC__GG
14._GU_296_/H___
____CG________TT______CC__GG
15._GU_296_/H___
____CG________TT______CC__GG
16._GU_296_/H___
____CG________TT______CC__GG
17._GU_296_/H___
____CG________AA__________GG
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
CCAACTCCGGCCGGGGCCAAAATTCTAA
1._GU_296_/H___
______CCGG__GGGG____AA____AA
2._GU_296_/H___
______CCGG__GGGGGG__AA____AA
3._GU_296_/H___
______CCGG__GGGGGG__AA____AA
4._GU_296_/H___
______CCGG__GGGGGG__AA____AA
5._GU_296_/H___
______CCGG__GGGGGG__AA____AA
6._GU_296_/H___
______CCGG__GGGGGG__AA____AA
7._GU_296_/H___
______CCGG__GGGGGG__AA____AA
8._GU_296_/H___
______CCGG__GGGGGG__AA____AA
9._GU_296_/H___
______CCGG__GGGGGG__AA____AA
10._GU_296_/H___
______CCGG__GGGGGG__AA____AA
11._GU_296_/H___
______CCGG__GGGGGG__AA____AA
12._GU_296_/H___
______CCGG__GGGGGG__AA____AA
13._GU_296_/H___
______CCGG__GGGGGG__AA____AA
14._GU_296_/H___
______CCGG__GGGGGG__AA____AA
15._GU_296_/H___
______CCGG__GGGGGG__AA____AA
16._GU_296_/H___
______CCGG__GGGGGG__AA____AA
17._GU_296_/H___
________GG__GGCCCC__AA____AA
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
GGCCCCAACCGGCTCCACATCCAAAACT
1._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
2._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
3._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
4._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
5._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
6._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
7._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
8._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
9._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
10._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
11._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
12._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
13._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
14._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
15._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
16._GU_296_/H___
GGCT__GG______CCAC__CC__AA__
17._GU_296_/H___
CC____________GGAC__CC__AA__
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
ACCTAAGGAACCGGGGGGCCAAAATTGG
1._GU_296_/H___
______GG____GG______AA______
2._GU_296_/H___
______GG____GG______AA______
3._GU_296_/H___
______GG____GG______AA______
4._GU_296_/H___
______GG____GG______AA______
5._GU_296_/H___
______GG____GG______AA______
6._GU_296_/H___
______GG____GG______AA______
7._GU_296_/H___
______GG____GG______AA______
8._GU_296_/H___
______GG____GG______AA______
9._GU_296_/H___
______GG____GG______AA______
10._GU_296_/H___
______GG____GG______AA______
11._GU_296_/H___
______GG____GG______AA______
12._GU_296_/H___
______GG____GG______AA______
13._GU_296_/H___
______GG____GG______AA______
14._GU_296_/H___
______GG____GG______AA______
15._GU_296_/H___
______GG____GG______AA______
16._GU_296_/H___
______GG____GG______AA______
17._GU_296_/H___
______GG____GG______AA______
 57 58 59 60           
_Input profile
CCTTACTTX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GU_296_/H___
________X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: GU_296_/H RUQ_230

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._GU_296_/H GC-01-076-4-12

92.5 %
20 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12 > FP2
 Mars, 2018

2._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7
 Mars, 2018

3._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

4._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 15
Notes: 15
 Mars, 2018

5._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14
 Mars, 2018

6._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

7._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

9._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

10._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 8
Notes: 8
 Mars, 2018

11._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

12._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

13._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

14._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

15._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

16._GU_296_/H GC-01-076-4-12

88.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1 > FP1
 Mars, 2018

17._GU_296_/H GC-01-76-4-12

76.5 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 4, Rep: 12, Tree: 2
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

 


  Key to SNP Markers

1TcSNP1527 2TcSNP1524 3TcSNP1458 4TcSNP1404 5TcSNP1401
6TcSNP1293 7TcSNP1275 8TcSNP1253 9TcSNP1237 10TcSNP1230
11TcSNP1205 12TcSNP1144 13TcSNP1112 14TcSNP1062 15TcSNP1053
16TcSNP1019 17TcSNP1010 18TcSNP999 19TcSNP998 20TcSNP945
21TcSNP899 22TcSNP872 23TcSNP836 24TcSNP835 25TcSNP823
26TcSNP800 27TcSNP739 28TcSNP731 29TcSNP723 30TcSNP702
31TcSNP660 32TcSNP645 33TcSNP644 34TcSNP642 35TcSNP640
36TcSNP602 37TcSNP591 38TcSNP589 39TcSNP577 40TcSNP546
41TcSNP529 42TcSNP522 43TcSNP519 44TcSNP421 45TcSNP363
46TcSNP329 47TcSNP305 48TcSNP290 49TcSNP230 50TcSNP194
51TcSNP189 52TcSNP176 53TcSNP144 54TcSNP143 55TcSNP131
56TcSNP52 57TcSNP49 58TcSNP33 59TcSNP19 60TcSNP13