SNP Profiles of UF 273   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
CTAACTCCGGGTAACCTTAAGTAACCAA
1._RUQ_1707
CTAACTCCGGGTAACCTTAAGTAACCAA
2._UF_273
______________CC______AA____
3._UF_273
______________CC______AA____
4._RUQ_1707
______________CC______AA____
5._MITC-000717
______________CC______AA____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGACCCACCCAAAACGAACCCCTTAACC
1._RUQ_1707
GGACCCACCCAAAACGAACCCCTTAACC
2._UF_273
GG________AC__CG__CCGG______
3._UF_273
GG________AC__CG__CCGG______
4._RUQ_1707
GG________AC__CG__CCGG______
5._MITC-000717
GG________CC__CC__AAAA______
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACCTTGGAGCCTTCCAACCGGAGCCAA
1._RUQ_1707
AACC__GGAGCCTTCCAACCGGAGCCAA
2._UF_273
______CCAG____CC__GGCCAG__AA
3._UF_273
______CCAG____CC__GGCCAG__AA
4._RUQ_1707
______CCAG____CC__GGCCAG__AA
5._MITC-000717
______CCGG____AA__CCCCAA__GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CTCTAACTGGTTCTGGAACTGGGGTTAG
1._RUQ_1707
CTCTAACTGGTTCTGGAACTGGGGTTAG
2._UF_273
________GG__________CC______
3._UF_273
________GG__________CC______
4._RUQ_1707
________GG__________CC______
5._MITC-000717
________AA__________AA______
 57 58 59 60           
_Input profile
GGCCTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._RUQ_1707
GGCCTTATX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._UF_273
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._UF_273
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._RUQ_1707
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._MITC-000717
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: UF_273 RUQ_1707B

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

1._UF_273 RUQ_1707

identical
59 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

2._UF_273

61.8 %
17 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Tree: Tree-2
 Mars, 2018

3._UF_273

61.8 %
17 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Field: La Montana, Tree: 1
 Mars, 2018

4._UF_273 RUQ_1707

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

5._UF_273 MITC-000717

38.2 %
17 shared markers

USDA-SHRS, United States of America
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527