SNP Profiles of CRU 156 (MIS_TTOICGT_GU175/P) View Data

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_Input profile	TT	TT	CG	GG	GG	TT	TT	GT	AC	GT	TT	TT	AA	CT
1._GC-01-131-7-08	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
2._GC-01-131-7-08	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
3._GC-01-131-7-08	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
4._GC-01-131-7-08	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
5._GC-01-131-7-08	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
6._CRU_156	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
7._CRU_156	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
8._CRU_156	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
9._CRU_156	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
10._CRU_156	__	__	CG	__	__	__	__	GT	__	__	CC	__	AG	__
11._RUQ_880	__	__	GG	__	__	__	__	TT	__	__	CC	__	GG	__
12._RUQ_880	__	__	GG	__	__	__	__	TT	__	__	__	__	__	__
13._CRU_156	__	__	CG	__	__	__	__	GT	__	__	__	__	GG	__
14._RUQ_880	__	__	CC	__	__	__	__	AA	__	__	__	__	GG	__

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_Input profile	AT	TT	TT	AG	CG	AG	GG	TT	AA	CC	CT	TT	GG	GT
1._GC-01-131-7-08	__	__	TT	AA	__	GG	CC	GG	__	AC	__	__	GG	GG
2._GC-01-131-7-08	__	__	TT	AA	__	GG	CC	GG	__	AC	__	__	GG	GG
3._GC-01-131-7-08	__	__	TT	AA	__	GG	CC	GG	__	AC	__	__	GG	GG
4._GC-01-131-7-08	__	__	TT	AA	__	GG	CC	GG	__	AC	__	__	GG	GG
5._GC-01-131-7-08	__	__	TT	AA	__	GG	CC	GG	__	AC	__	__	GG	GG
6._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
7._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
8._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
9._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
10._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
11._RUQ_880	__	__	__	AG	__	__	GG	__	__	__	__	__	__	GG
12._RUQ_880	__	__	CC	AA	__	__	GG	__	__	AA	__	__	AA	GG
13._CRU_156	__	__	__	AA	__	__	CC	__	__	__	__	__	__	GG
14._RUQ_880	__	__	__	AA	__	GG	CC	CC	__	AA	__	__	AA	CC

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_Input profile	CC	CC	AA	CG	AG	TT	CC	CC	AA	CC	AA	CC	CT	AC
1._GC-01-131-7-08	CC	__	AG	__	__	__	CC	AC	__	CC	__	CC	__	__
2._GC-01-131-7-08	CC	__	AG	__	__	__	CC	AC	__	CC	__	CC	__	__
3._GC-01-131-7-08	CC	__	AG	__	__	__	CC	AC	__	CC	__	CC	__	__
4._GC-01-131-7-08	CC	__	AG	__	__	__	CC	AC	__	CC	__	CC	__	__
5._GC-01-131-7-08	CC	__	AG	__	__	__	CC	AC	__	CC	__	CC	__	__
6._CRU_156	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
7._CRU_156	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
8._CRU_156	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
9._CRU_156	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
10._CRU_156	__	__	AG	__	__	__	__	AC	__	CC	__	CC	__	__
11._RUQ_880	__	__	AA	__	__	__	__	CC	__	CC	__	AA	__	__
12._RUQ_880	CC	__	__	__	__	__	CC	CC	__	CC	__	AA	__	__
13._CRU_156	__	__	AG	__	__	__	__	AC	__	GG	__	AC	__	__
14._RUQ_880	__	__	__	__	__	__	GG	CC	__	CC	__	AA	__	__

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_Input profile	CC	AC	AG	AA	TT	AG	TT	GG	TT	CC	TT	TT	GG	CC
1._GC-01-131-7-08	__	__	AG	__	__	AG	__	__	__	AA	__	__	__	__
2._GC-01-131-7-08	__	__	AG	__	__	AG	__	__	__	AA	__	__	__	__
3._GC-01-131-7-08	__	__	AG	__	__	AG	__	__	__	AA	__	__	__	__
4._GC-01-131-7-08	__	__	AG	__	__	AG	__	__	__	AA	__	__	__	__
5._GC-01-131-7-08	__	__	AG	__	__	AG	__	__	__	AA	__	__	__	__
6._CRU_156	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
7._CRU_156	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
8._CRU_156	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
9._CRU_156	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
10._CRU_156	__	__	__	__	__	AG	__	__	__	AA	__	__	__	__
11._RUQ_880	__	__	__	__	__	GG	__	__	__	AA	__	__	__	__
12._RUQ_880	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__
13._CRU_156	__	__	__	__	__	AA	__	__	__	AC	__	__	__	__
14._RUQ_880	__	__	GG	__	__	GG	__	__	__	AA	__	__	__	__

	57	58	59
_Input profile	CC	AC	TT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._GC-01-131-7-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._GC-01-131-7-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._GC-01-131-7-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._GC-01-131-7-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._GC-01-131-7-08	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._RUQ_880	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._RUQ_880	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CRU_156	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._RUQ_880	__	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CRU_156 RUQ_880

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.651 Cri
0.345

1._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 1

Notes: 1

2._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 2

Notes: 2

3._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 3

Notes: 3

4._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Tree: 5

Notes: 5

5._CRU_156 GC-01-131-7-08

64.3 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 6

Notes: 6

6._CRU_156

57.7 %
13 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 1708 6

Dapeng Zhang, 2016

7._CRU_156

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1708 5

Dapeng Zhang, 2016

8._CRU_156

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1708 3

Dapeng Zhang, 2016

9._CRU_156

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1708 2

Dapeng Zhang, 2016

10._CRU_156

57.7 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 1708 1

Dapeng Zhang, 2016

11._CRU_156 RUQ_880

53.8 %
13 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2016

12._CRU_156 RUQ_880

50 %
16 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Dapeng Zhang, 2014

13._CRU_156

45.8 %
12 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago

Location: CAMPUS 1 A X2 Y1

Dapeng Zhang, 2016

14._CRU_156 RUQ_880

26.5 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Notes: Reading_Collection

Key to SNP Markers

Key to SNP Markers

1	TcSNP1527	2	TcSNP1524	3	TcSNP1458	4	TcSNP1404	5	TcSNP1401
6	TcSNP1293	7	TcSNP1275	8	TcSNP1253	9	TcSNP1230	10	TcSNP1205
11	TcSNP1144	12	TcSNP1112	13	TcSNP1062	14	TcSNP1053	15	TcSNP1019
16	TcSNP1010	17	TcSNP999	18	TcSNP998	19	TcSNP945	20	TcSNP899
21	TcSNP872	22	TcSNP836	23	TcSNP835	24	TcSNP823	25	TcSNP800
26	TcSNP739	27	TcSNP731	28	TcSNP723	29	TcSNP702	30	TcSNP660
31	TcSNP645	32	TcSNP644	33	TcSNP642	34	TcSNP640	35	TcSNP602
36	TcSNP591	37	TcSNP589	38	TcSNP577	39	TcSNP546	40	TcSNP529
41	TcSNP522	42	TcSNP519	43	TcSNP421	44	TcSNP363	45	TcSNP329
46	TcSNP305	47	TcSNP290	48	TcSNP230	49	TcSNP194	50	TcSNP189
51	TcSNP176	52	TcSNP144	53	TcSNP143	54	TcSNP131	55	TcSNP52
56	TcSNP49	57	TcSNP33	58	TcSNP19	59	TcSNP13