SNP Profiles of PA 150 [PER]   View Data

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 Key

 1 2 3 4 5 6 7 8 9 10 11 12 13 14
_Input profile
TTCCCTCCGGTTATACCCGGGGGGTTAA
1._PA_150_[PER]
______________AC______GG____
2._PA_150_[PER]
______________AC______GG____
3._PA_150_[PER]
______________AC______GG____
4._PA_150_[PER]
______________AC______GG____
5._GC-01-034-2-11
______________CC______AG____
6._GC-01-034-2-11
______________CC______AG____
7._GC-01-034-2-11
______________CC______AG____
8._GC-01-034-2-11
______________CC______AG____
9._PA_150_[PER]
______________CC______AG____
10._PA_150_[PER]
______________CC______AG____
11._PA_150_[PER]
______________CC______AG____
12._PA_150_[PER]
______________CC______AG____
13._GC-01-034-2-11
______________AC______AG____
14._GC-01-034-2-11
______________AC______AG____
15._GC-01-034-2-11
______________AC______AG____
16._GC-01-034-2-11
______________AC______AG____
17._GC-01-034-2-11
______________AC______AG____
18._RUQ_1731
______________AC______GG____
19._PA_150_[PER]_Fld#_173_Plt#_1
______________AC______GG____
20._PA_150_[PER]
______________AC______AG____
21._PA_150_[PER]
______________AC______AG____
22._PA_150_[PER]
______________AC______AG____
23._PA_150_[PER]
______________AC______AG____
24._PA_150_[PER]
______________AC______AG____
25._PA_150_[PER]
______________AC______AA____
26._PA_150_[PER]
______________AA______AA____
27._GC-01-034-2-11
______________AA______AA____
28._PA_150_[PER]
______________CC______AA____
29._GC-01-34-2-11
______________CC______AG____
30._GC-01-34-2-11
______________AC______AG____
31._GC-01-34-2-11
______________AC______AG____
 15 16 17 18 19 20 21 22 23 24 25 26 27 28
_Input profile
GGAACCAACCAAGGCGAAACCTCCAGCC
1._PA_150_[PER]
__________AC__CG__AC________
2._PA_150_[PER]
__________AC__CG__AC________
3._PA_150_[PER]
__________AC__CG__AC________
4._PA_150_[PER]
__________AC__CG__AC________
5._GC-01-034-2-11
GG________AC__CG__CCCT______
6._GC-01-034-2-11
GG________AC__CG__CCCT______
7._GC-01-034-2-11
GG________AC__CG__CCCT______
8._GC-01-034-2-11
GG________AC__CG__CCCT______
9._PA_150_[PER]
__________AC__CG__CC________
10._PA_150_[PER]
__________AC__CG__CC________
11._PA_150_[PER]
__________AC__CG__CC________
12._PA_150_[PER]
__________AC__CG__CC________
13._GC-01-034-2-11
GG________AC__GG__AACT______
14._GC-01-034-2-11
GG________AC__GG__AACT______
15._GC-01-034-2-11
GG________AC__GG__AACT______
16._GC-01-034-2-11
GG________AC__GG__AACT______
17._GC-01-034-2-11
GG________AC__GG__AACT______
18._RUQ_1731
GG________AC__CG__ACAG______
19._PA_150_[PER]_Fld#_173_Plt#_1
GG________AC__CG__ACAG______
20._PA_150_[PER]
__________AC__GG__AA________
21._PA_150_[PER]
__________AC__GG__AA________
22._PA_150_[PER]
__________AC__GG__AA________
23._PA_150_[PER]
__________AC__GG__AA________
24._PA_150_[PER]
__________AC__GG__AA________
25._PA_150_[PER]
__________CC__GG__AA________
26._PA_150_[PER]
__________AC__CC__AC________
27._GC-01-034-2-11
AG________AC__CC__ACCT______
28._PA_150_[PER]
__________AC__GG__AC________
29._GC-01-34-2-11
GG________AC__CG__CCAG______
30._GC-01-34-2-11
GG________AC__GG__AAAG______
31._GC-01-34-2-11
GG________AC__GG__AAAG______
 29 30 31 32 33 34 35 36 37 38 39 40 41 42
_Input profile
AACCCCGGAGCTTTAAAATTGGGGCCAG
1._PA_150_[PER]
AA____GG____________GG____AG
2._PA_150_[PER]
AA____GG____________GG____AG
3._PA_150_[PER]
AA____GG____________GG____AG
4._PA_150_[PER]
AA____GG____________GG____AG
5._GC-01-034-2-11
AG__CTGGAG____AA__CGGGGG__AG
6._GC-01-034-2-11
AG__CTGGAG____AA__CGGGGG__AG
7._GC-01-034-2-11
AG__CTGGAG____AA__CGGGGG__AG
8._GC-01-034-2-11
AG__CTGGAG____AA__CGGGGG__AG
9._PA_150_[PER]
AG____GG____________GG____AG
10._PA_150_[PER]
AG____GG____________GG____AG
11._PA_150_[PER]
AG____GG____________GG____AG
12._PA_150_[PER]
AG____GG____________GG____AG
13._GC-01-034-2-11
GG__CTGTGG____AA__GGGGGG__GG
14._GC-01-034-2-11
GG__CTGTGG____AA__GGGGGG__GG
15._GC-01-034-2-11
GG__CTGTGG____AA__GGGGGG__GG
16._GC-01-034-2-11
GG__CTGTGG____AA__GGGGGG__GG
17._GC-01-034-2-11
GG__CTGTGG____AA__GGGGGG__GG
18._RUQ_1731
______CCAG____AA__GGCCGG__AG
19._PA_150_[PER]_Fld#_173_Plt#_1
______CCAG____AA__GGCCGG__AG
20._PA_150_[PER]
GG____GT____________GG____GG
21._PA_150_[PER]
GG____GT____________GG____GG
22._PA_150_[PER]
GG____GT____________GG____GG
23._PA_150_[PER]
GG____GT____________GG____GG
24._PA_150_[PER]
GG____GT____________GG____GG
25._PA_150_[PER]
AA____GG____________CC____AG
26._PA_150_[PER]
AG____GG____________CG____AG
27._GC-01-034-2-11
AG__CTGGAG____AC__CGCGAG__AG
28._PA_150_[PER]
GG____GG____________CC____AA
29._GC-01-34-2-11
______CCAG____AA__CGCCGG__AG
30._GC-01-34-2-11
______ACGG____AA__CCCCGG__GG
31._GC-01-34-2-11
______ACGG____AA__CCCCGG__GG
 43 44 45 46 47 48 49 50 51 52 53 54 55 56
_Input profile
CCTTAACCGGTTCCGGAACCTTGGTTGG
1._PA_150_[PER]
________GG__CC______TT______
2._PA_150_[PER]
________GG__CC______TT______
3._PA_150_[PER]
________GG__CC______TT______
4._PA_150_[PER]
________GG__________TT______
5._GC-01-034-2-11
CC______AG__CC______TT______
6._GC-01-034-2-11
CC______AG__CC______TT______
7._GC-01-034-2-11
CC______AG__CC______TT______
8._GC-01-034-2-11
CC______AG__CC______TT______
9._PA_150_[PER]
________AG__CC______TT______
10._PA_150_[PER]
________AG__CC______TT______
11._PA_150_[PER]
________AG__CC______TT______
12._PA_150_[PER]
________AG__CC______TT______
13._GC-01-034-2-11
TT______GG__CT______TT______
14._GC-01-034-2-11
TT______GG__CT______TT______
15._GC-01-034-2-11
TT______GG__CT______TT______
16._GC-01-034-2-11
TT______GG__CT______TT______
17._GC-01-034-2-11
TT______GG__CT______TT______
18._RUQ_1731
________GG__________AA______
19._PA_150_[PER]_Fld#_173_Plt#_1
________GG__________AA______
20._PA_150_[PER]
________GG__CT______TT______
21._PA_150_[PER]
________GG__CT______TT______
22._PA_150_[PER]
________GG__CT______TT______
23._PA_150_[PER]
________GG__CT______TT______
24._PA_150_[PER]
________GG__CT______TT______
25._PA_150_[PER]
________GG__CC______TT______
26._PA_150_[PER]
________AG__CT______GT______
27._GC-01-034-2-11
CT______AG__CT______GT______
28._PA_150_[PER]
________GG__________GT______
29._GC-01-34-2-11
________AG__________AA______
30._GC-01-34-2-11
________GG__________AA______
31._GC-01-34-2-11
________GG__________AA______
 57 58 59 60           
_Input profile
GGGGTTAAX_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
1._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
2._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
3._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
4._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
5._GC-01-034-2-11
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
6._GC-01-034-2-11
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
7._GC-01-034-2-11
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
8._GC-01-034-2-11
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
9._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
10._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
11._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
12._PA_150_[PER]
__GG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
13._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
14._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
15._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
16._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
17._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
18._RUQ_1731
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
19._PA_150_[PER]_Fld#_173_Plt#_1
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
20._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
21._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
22._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
23._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
24._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
25._PA_150_[PER]
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
26._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
27._GC-01-034-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
28._PA_150_[PER]
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
29._GC-01-34-2-11
__CC____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
30._GC-01-34-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X
31._GC-01-34-2-11
__CG____X_XX_XX_XX_XX_XX_XX_XX_XX_XX_X

Input profile: PA_150_[PER] RUQ_1731

 
International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023
Population Assignment: 

1._PA_150_[PER]

96.2 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P70 1019
 Dapeng Zhang, 2016

2._PA_150_[PER]

96.2 %
13 shared markers

Malaysian Cocoa Board (MCB), Malaysia
Location: Plot 1 - Row4 C0183 28
 Dapeng Zhang, 2016

3._PA_150_[PER]

96.2 %
13 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D 679
 Dapeng Zhang, 2016

4._PA_150_[PER]

95.8 %
12 shared markers

International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D679
 Dapeng Zhang, 2016

5._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

6._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

7._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

8._PA_150_[PER] GC-01-034-2-11

78.6 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 7
Notes: 7 > FP4
 Mars, 2018

9._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 2
 Dapeng Zhang, 2016

10._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 3
 Dapeng Zhang, 2016

11._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 10
 Dapeng Zhang, 2016

12._PA_150_[PER]

76.9 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 7 > FP
 Dapeng Zhang, 2016

13._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

14._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 14
Notes: 14 > FP3
 Mars, 2018

15._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9 > FP1
 Mars, 2018

16._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

17._PA_150_[PER] GC-01-034-2-11

61.9 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

18._PA_150_[PER] RUQ_1731

61.8 %
17 shared markers

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

19._PA_150_[PER] PA_150_[PER]_Fld#_173_Plt#_1

61.8 %
17 shared markers

USDA-TARS, United States of America
Location: Field: 173, Tree: 1
 Mars, 2018

20._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 4
 Dapeng Zhang, 2016

21._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 6
 Dapeng Zhang, 2016

22._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 16
 Dapeng Zhang, 2016

23._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 9 > FP
 Dapeng Zhang, 2016

24._PA_150_[PER]

61.5 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 14 > F
 Dapeng Zhang, 2016

25._PA_150_[PER]

61.5 %
13 shared markers

Cocoa Research Institute of Ghana (CRIG), Ghana
Location: P74 1009
 Dapeng Zhang, 2016

26._PA_150_[PER]

57.7 %
13 shared markers

Mars Center for Cocoa Science, Brazil
Location: 1209 5 > FP
 Dapeng Zhang, 2016

27._PA_150_[PER] GC-01-034-2-11

57.1 %
21 shared markers

Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5 > FP2
 Mars, 2018

28._PA_150_[PER]

50 %
12 shared markers

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica
Location: Cabiria PA 150
 Dapeng Zhang, 2016

29._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 7 > FP4
Notes: Brazil_Selections_Poss_grandparent/ (offtype, similar to offtype EET 272, parcel 3311)
 Mars, 2018

30._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 5 > FP2
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

31._PA_150_[PER] GC-01-34-2-11

50 %
17 shared markers

Mars Center for Cocoa Science, Brazil
Location: Field: 1, Block: 2, Rep: 9, Tree: 14 > FP3
Notes: Brazil_Selections_Poss_grandparent
 Mars, 2018

 


  Key to SNP Markers

1TcSNP13 2TcSNP19 3TcSNP33 4TcSNP49 5TcSNP52
6TcSNP131 7TcSNP143 8TcSNP144 9TcSNP176 10TcSNP189
11TcSNP194 12TcSNP230 13TcSNP290 14TcSNP305 15TcSNP329
16TcSNP363 17TcSNP421 18TcSNP519 19TcSNP522 20TcSNP529
21TcSNP546 22TcSNP577 23TcSNP589 24TcSNP591 25TcSNP602
26TcSNP640 27TcSNP642 28TcSNP644 29TcSNP645 30TcSNP660
31TcSNP702 32TcSNP723 33TcSNP731 34TcSNP739 35TcSNP800
36TcSNP823 37TcSNP835 38TcSNP836 39TcSNP872 40TcSNP899
41TcSNP945 42TcSNP998 43TcSNP999 44TcSNP1010 45TcSNP1019
46TcSNP1053 47TcSNP1062 48TcSNP1112 49TcSNP1144 50TcSNP1205
51TcSNP1230 52TcSNP1237 53TcSNP1253 54TcSNP1275 55TcSNP1293
56TcSNP1401 57TcSNP1404 58TcSNP1458 59TcSNP1524 60TcSNP1527