SNP Profiles of CCN 51 View Data

Show/Hide Profiles

	1	2	3	4	5	6	7	8	9	10	11	12	13	14
_Input profile	CT	CC	CT	AC	GG	GT	AT	AC	CT	AG	GT	AA	TT	CC
1._RUQ_1737	CT	CC	CT	AC	GG	GT	AT	AC	CT	AG	GT	AA	TT	CC
2._RUQ_1737C	CT	CC	CT	AC	GG	GT	AT	AC	CT	AG	GT	AA	TT	CC
3._RUQ_1737B	CT	CC	CT	AC	GG	GT	AT	AC	CT	AG	GT	AA	TT	CC
4._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
5._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
6._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
7._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
8._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
9._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
10._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
11._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
12._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
13._CCN_51	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
14._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
15._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
16._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
17._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
18._GC-06-4-1-04	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
19._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
20._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
21._GC-07-019-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
22._GC-07-19-1-21	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
23._RUQ_1736	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
24._MITC-000000	__	__	__	__	__	__	__	AC	__	__	__	AA	__	__
25._CCN_51	__	__	__	__	__	__	__	AA	__	__	__	GG	__	__

	15	16	17	18	19	20	21	22	23	24	25	26	27	28
_Input profile	AG	CC	CT	AA	CC	AA	AA	CC	AA	CC	CC	TT	AA	CG
1._RUQ_1737	AG	CC	CT	AA	CC	AA	AA	CC	AA	CC	CC	TT	AA	CG
2._RUQ_1737C	AG	CC	CT	AA	CC	AA	AA	CC	AA	CC	CC	TT	AA	CG
3._RUQ_1737B	AG	CC	CT	AA	CC	__	AA	CC	AA	CC	CC	TT	AA	CG
4._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
5._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
6._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
7._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
8._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
9._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
10._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
11._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
12._CCN_51	__	__	__	__	__	AC	__	CC	__	CC	__	__	__	__
13._CCN_51	__	__	__	__	__	AC	__	CC	__	__	__	__	__	__
14._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	__	CC	__	__	__
15._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
16._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
17._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
18._GC-06-4-1-04	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
19._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
20._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
21._GC-07-019-1-21	AG	__	__	__	__	AC	__	CC	__	CC	CC	__	__	__
22._GC-07-19-1-21	AG	__	__	__	__	AC	__	CC	__	CC	GG	__	__	__
23._RUQ_1736	AG	__	__	__	__	AC	__	CC	__	CC	GG	__	__	__
24._MITC-000000	AG	__	__	__	__	AC	__	CC	__	CC	GG	__	__	__
25._CCN_51	__	__	__	__	__	CC	__	CC	__	CC	__	__	__	__

	29	30	31	32	33	34	35	36	37	38	39	40	41	42
_Input profile	AG	CC	TT	GG	GG	CT	CT	CC	AA	TT	CC	AG	GG	AA
1._RUQ_1737	AG	CC	TT	GG	GG	CT	CT	CC	AA	TT	CC	AG	GG	AA
2._RUQ_1737C	AG	CC	TT	GG	GG	CT	CT	CC	AA	TT	CC	AG	GG	AA
3._RUQ_1737B	AG	CC	TT	GG	GG	CT	CT	CC	AA	TT	CC	AG	GG	AA
4._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
5._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
6._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
7._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
8._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
9._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
10._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
11._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
12._CCN_51	AG	__	__	GG	__	__	__	__	__	__	CC	__	__	AA
13._CCN_51	AG	__	__	GG	__	__	__	__	__	__	__	__	__	AA
14._GC-07-019-1-21	AG	__	__	GG	GG	__	__	CC	__	CG	__	AG	__	AA
15._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
16._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
17._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
18._GC-06-4-1-04	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
19._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
20._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
21._GC-07-019-1-21	AG	__	CC	GG	GG	__	__	CC	__	CG	CC	AG	__	AA
22._GC-07-19-1-21	__	__	__	CC	GG	__	__	CC	__	CG	GG	AG	__	AA
23._RUQ_1736	__	__	__	CC	GG	__	__	CC	__	CG	GG	AG	__	AA
24._MITC-000000	__	__	__	CC	GG	__	__	CC	__	CG	GG	AG	__	AA
25._CCN_51	GG	__	__	TT	__	__	__	__	__	__	CC	__	__	AA

	43	44	45	46	47	48	49	50	51	52	53	54	55	56
_Input profile	CC	CC	AT	CT	AG	CT	CT	GT	AA	CT	TT	GT	AT	AG
1._RUQ_1737	CC	CC	AT	CT	AG	CT	CT	GT	AA	CT	TT	GT	AT	AG
2._RUQ_1737C	CC	CC	AT	CT	AG	CT	CT	GT	AA	CT	TT	GT	AT	AG
3._RUQ_1737B	CC	CC	AT	__	AG	CT	CT	GT	AA	__	TT	GT	__	AG
4._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
5._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
6._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
7._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
8._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
9._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
10._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
11._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
12._CCN_51	__	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
13._CCN_51	__	__	__	__	__	__	CT	__	__	__	TT	__	__	__
14._GC-07-019-1-21	CC	__	__	__	__	__	CT	__	__	__	TT	__	__	__
15._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
16._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
17._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
18._GC-06-4-1-04	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
19._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
20._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
21._GC-07-019-1-21	CC	__	__	__	AG	__	CT	__	__	__	TT	__	__	__
22._GC-07-19-1-21	__	__	__	__	AG	__	__	__	__	__	AA	__	__	__
23._RUQ_1736	__	__	__	__	AG	__	__	__	__	__	AA	__	__	__
24._MITC-000000	__	__	__	__	AG	__	__	__	__	__	AA	__	__	__
25._CCN_51	__	__	__	__	AA	__	CC	__	__	__	GG	__	__	__

	57	58	59	60
_Input profile	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
1._RUQ_1737	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
2._RUQ_1737C	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
3._RUQ_1737B	GG	GG	TT	AT	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
4._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
5._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
6._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
7._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
8._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
9._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
10._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
11._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
12._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
13._CCN_51	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
14._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
15._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
16._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
17._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
18._GC-06-4-1-04	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
19._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
20._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
21._GC-07-019-1-21	__	GG	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
22._GC-07-19-1-21	__	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
23._RUQ_1736	__	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
24._MITC-000000	__	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X
25._CCN_51	__	CC	__	__	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X	X_X

Input profile: CCN_51 RUQ_1736

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

Population Assignment:

Ame
0.275 Cri
0.293 IMC
0.424

1._CCN_51 RUQ_1737

identical
60 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

2._CCN_51 RUQ_1737C

identical
60 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

3._CCN_51 RUQ_1737B

identical
56 shared markers

View View all Clone Any

International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

Lambert Motilal, 2023

4._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 10

Dapeng Zhang, 2016

5._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 12

Dapeng Zhang, 2016

6._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 13

Dapeng Zhang, 2016

7._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 14

Dapeng Zhang, 2016

8._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 3 > FP

Dapeng Zhang, 2016

9._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: 7121 4 > FP

Dapeng Zhang, 2016

10._CCN_51

96.2 %
13 shared markers

View View all Clone Any

Estation Experimental Tropical Pichilingue, Ecuador

Dapeng Zhang, 2016

11._CCN_51

96.2 %
13 shared markers

View View all Clone Any

USAPEN

Dapeng Zhang, 2016

12._CCN_51

96.2 %
13 shared markers

View View all Clone Any

USASPC

Dapeng Zhang, 2016

13._CCN_51

95 %
10 shared markers

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Mars Center for Cocoa Science, Brazil

Location: 7121 6 > FP

Dapeng Zhang, 2016

14._CCN_51 GC-07-019-1-21

91.2 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL6

Notes: PL6 FP4

15._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL4

Notes: PL4 FP2

16._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

View View all Clone Any

Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: PL3

Notes: PL3 FP1

17._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 14

18._CCN_51 GC-06-4-1-04

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 6, Block: 1, Rep: 4, Tree: PL7

Notes: PL7 FP

19._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 10

20._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 12

21._CCN_51 GC-07-019-1-21

88.1 %
21 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Tree: 13

22._CCN_51 GC-07-19-1-21

61.8 %
17 shared markers

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Mars Center for Cocoa Science, Brazil

Location: Field: 7, Block: 1, Rep: 21, Tree: 3 > FP1

23._CCN_51 RUQ_1736

61.8 %
17 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom

24._CCN_51 MITC-000000

61.8 %
17 shared markers

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USDA-SHRS, United States of America

25._CCN_51

46.2 %
13 shared markers

View View all Clone Any

Centro Agronómico Tropical de Investigación y Enseñanza (CATIE), Costa Rica

Location: Cabiria

Dapeng Zhang, 2016

Key to SNP Markers

Key to SNP Markers

1	TcSNP13	2	TcSNP19	3	TcSNP33	4	TcSNP49	5	TcSNP52
6	TcSNP131	7	TcSNP143	8	TcSNP144	9	TcSNP176	10	TcSNP189
11	TcSNP194	12	TcSNP230	13	TcSNP290	14	TcSNP305	15	TcSNP329
16	TcSNP363	17	TcSNP421	18	TcSNP519	19	TcSNP522	20	TcSNP529
21	TcSNP546	22	TcSNP577	23	TcSNP589	24	TcSNP591	25	TcSNP602
26	TcSNP640	27	TcSNP642	28	TcSNP644	29	TcSNP645	30	TcSNP660
31	TcSNP702	32	TcSNP723	33	TcSNP731	34	TcSNP739	35	TcSNP800
36	TcSNP823	37	TcSNP835	38	TcSNP836	39	TcSNP872	40	TcSNP899
41	TcSNP945	42	TcSNP998	43	TcSNP999	44	TcSNP1010	45	TcSNP1019
46	TcSNP1053	47	TcSNP1062	48	TcSNP1112	49	TcSNP1144	50	TcSNP1205
51	TcSNP1230	52	TcSNP1237	53	TcSNP1253	54	TcSNP1275	55	TcSNP1293
56	TcSNP1401	57	TcSNP1404	58	TcSNP1458	59	TcSNP1524	60	TcSNP1527